IslandPath Analysis: Clostridium novyi NT



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.96   STD DEV: 3.46
Clostridium novyi NT, complete genome - 1..2547720
2315 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.89	0	335..469	+	44	118444385	rpmH	NT01CX_0868	-	50S ribosomal protein L34
2	 25.73	0	527..868	+	113	118443844	rnpA	NT01CX_0869	-	ribonuclease P
3	 27.23	0	868..1080	+	70	118443513	-	NT01CX_0870	-	hypothetical protein
4	 28.21	0	1099..1839	+	246	118442981	-	NT01CX_0871	-	putative inner membrane protein translocase component YidC
5	 30.48	0	1903..2532	+	209	118444639	-	NT01CX_0872	-	R3H domain-containing protein
6	 31.30	0	2594..3973	+	459	118444248	trmE	NT01CX_0873	-	tRNA modification GTPase TrmE
7	 31.91	0	3986..5884	+	632	118443722	gidA	NT01CX_0874	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
8	 28.14	0	5885..6616	+	243	118444066	gidB	NT01CX_0875	-	glucose-inhibited division protein B
9	 28.21	0	6709..7488	+	259	118443812	-	NT01CX_0876	-	spoOJ protein, putative
10	 29.13	0	7694..8479	+	261	118443230	-	NT01CX_0877	-	sporulation initiation inhibitor protein soj
11	 27.19	0	8472..9317	+	281	118443024	-	NT01CX_0878	-	stage 0 sporulation protein J
12	 29.19	0	9363..9869	+	168	118443471	-	NT01CX_0879	-	hypothetical protein
13	 28.16	0	9911..10528	-	205	118444149	-	NT01CX_0880	-	hypothetical protein
14	 28.59	0	10616..11248	-	210	118444555	-	NT01CX_0881	-	LysE type translocator
15	 30.09	0	11436..11651	+	71	118444134	-	NT01CX_0882	-	hypothetical protein
16	 32.64	+1	11787..12074	+	95	118444568	rpsF	NT01CX_0883	-	30S ribosomal protein S6
17	 37.81	+2	12086..12532	+	148	118443896	-	NT01CX_0884	-	single-stranded DNA binding protein
18	 30.38	0	12573..12809	+	78	118444188	rpsR	NT01CX_0885	-	30S ribosomal protein S18
19	 23.40	-1	12963..13274	+	103	118443030	-	NT01CX_0886	-	hypothetical protein
20	 26.65	0	13290..14291	+	333	118443356	-	NT01CX_0887	-	membrane protein, putative
21	 29.00	0	14293..16278	+	661	118444184	-	NT01CX_0888	-	DHH subfamily 1 protein
22	 27.48	0	16280..16723	+	147	118444702	rplI	NT01CX_0889	-	50S ribosomal protein L9
23	 30.88	0	16899..18695	+	598	118443553	-	NT01CX_0890	-	ATP-dependent protease LA
24	 33.11	+1	18723..20057	+	444	118443592	dnaB	NT01CX_0891	-	replicative DNA helicase
25	 25.80	0	20094..20531	-	145	118443885	-	NT01CX_0892	-	small heat shock protein, putative
26	 31.24	0	21127..21984	+	285	118444302	-	NT01CX_0894	-	degV family protein
27	 29.99	0	22003..22839	+	278	118444706	-	NT01CX_0895	-	DegV family protein, putative
28	 31.24	0	23081..24370	+	429	118443218	-	NT01CX_0896	-	homoserine dehydrogenase
29	 28.84	0	24391..25881	+	496	118443625	-	NT01CX_0897	-	threonine synthase
30	 31.00	0	25981..26967	+	328	118444008	-	NT01CX_0898	-	birA bifunctional protein, putative
31	 26.76	0	26980..27192	+	70	118444249	-	NT01CX_0899	-	hypothetical protein
32	 23.63	-1	27384..27620	+	78	118443835	-	NT01CX_0900	-	hypothetical protein
33	 35.25	+1	27764..29017	-	417	118443392	proA	NT01CX_0901	-	gamma-glutamyl phosphate reductase
34	 32.89	+1	29030..30169	-	379	118442930	proB	NT01CX_0902	-	gamma-glutamyl kinase
35	 31.60	0	30320..31126	+	268	118444610	proC	NT01CX_0903	-	pyrroline-5-carboxylate reductase
36	 31.42	0	31463..32875	+	470	118444065	-	NT01CX_0904	-	NAD(FAD)-utilizing dehydrogenase
37	 33.80	+1	32963..34246	+	427	118444000	purA	NT01CX_0905	-	adenylosuccinate synthetase
38	 34.38	+1	34314..34505	+	63	118443561	-	NT01CX_0906	-	hypothetical protein
39	 26.83	0	34609..35361	+	250	118442902	-	NT01CX_0907	-	acyl-acyl carrier protein thioesterase
40	 31.33	0	35456..36700	-	414	118443206	-	NT01CX_0908	-	hypothetical protein
41	 26.18	0	37946..38938	-	330	118444581	-	NT01CX_0917	-	DNA replication protein DnaC
42	 29.31	0	38931..39923	-	330	118444142	-	NT01CX_0918	-	DNA replication protein DnaD
43	 29.92	0	40078..41808	+	576	118443542	-	NT01CX_0919	-	hypothetical protein
44	 31.00	0	42030..42500	+	156	118443025	-	NT01CX_0920	-	MarR family transcriptional regulator
45	 33.54	+1	42506..43480	+	324	118443447	-	NT01CX_0921	-	3-oxoacyl-(acyl carrier protein) synthase III
46	 25.11	-1	43514..43744	+	76	118442905	acpP	NT01CX_0922	-	acyl carrier protein
47	 37.75	+2	43804..44754	+	316	118443289	-	NT01CX_0923	-	enoyl-(acyl-carrier-protein) reductase II
48	 32.28	0	44747..45691	+	314	118444515	fabD	NT01CX_0924	-	malonyl CoA-acyl carrier protein transacylase
49	 31.61	0	45691..46443	+	250	118444212	fabG	NT01CX_0925	-	3-ketoacyl-(acyl-carrier-protein) reductase
50	 36.80	+2	46457..47698	+	413	118443407	-	NT01CX_0926	-	3-oxoacyl-(acyl carrier protein) synthase II
51	 31.29	0	47702..48190	+	162	118443464	accB	NT01CX_0927	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
52	 35.90	+2	48203..48631	+	142	118443054	fabZ	NT01CX_0928	-	(3R)-hydroxymyristoyl-ACP dehydratase
53	 33.04	+1	48640..49983	+	447	118444296	accC	NT01CX_0929	-	biotin carboxylase
54	 30.67	0	50029..50892	+	287	118443895	accD	NT01CX_0930	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
55	 32.15	0	50916..51761	+	281	118444723	accA	NT01CX_0931	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
56	 30.72	0	51944..52786	+	280	118444146	-	NT01CX_0932	-	amino acid ABC transporter, substrate-binding protein
57	 31.33	0	52818..53516	+	232	118444342	-	NT01CX_0933	-	amino acid ABC transporter, permease protein
58	 33.33	+1	53509..54231	+	240	118443320	-	NT01CX_0934	-	ABC transporter
59	 29.81	0	54455..55078	+	207	118443506	-	NT01CX_0935	-	hypothetical protein
60	 30.49	0	55356..57710	+	784	118443798	-	NT01CX_0936	-	DNA repair helicase, truncation, putative
61	 31.17	0	57986..59140	-	384	118443604	-	NT01CX_0937	-	transposase mutator family protein
62	 28.47	0	59367..60806	-	479	118443931	-	NT01CX_0938	-	ISBma2, transposase
63	 27.41	0	60987..61307	-	106	118444655	-	NT01CX_0939	-	resolvase, putative
64	 30.26	0	61794..62249	+	151	118443193	-	NT01CX_0940	-	hypothetical protein
65	 28.15	0	63044..63796	-	250	118443302	-	NT01CX_0941	-	hypothetical protein
66	 34.06	+1	64054..65298	+	414	118443747	cinA	NT01CX_0942	-	competence damage-inducible protein A
67	 32.13	0	65481..66644	+	387	118444438	-	NT01CX_0943	-	Sodium:dicarboxylate symporter family protein
68	 30.67	0	66669..67871	-	400	118444018	-	NT01CX_0944	-	subtilase family protein
69	 31.54	0	67969..68415	-	148	118443595	-	NT01CX_0945	-	hypothetical protein
70	 28.60	0	68484..68969	-	161	118443176	-	NT01CX_0946	-	hypothetical protein
71	 26.05	0	69119..69667	-	182	118443337	-	NT01CX_0947	-	hypothetical protein
72	 33.89	+1	70069..71325	+	418	118443882	murA	NT01CX_0948	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
73	 29.40	0	71345..72133	+	262	118443215	-	NT01CX_0949	-	metallo-beta-lactamase superfamily protein
74	 25.40	-1	72148..72714	+	188	118443765	-	NT01CX_0950	-	lipoprotein
75	 29.17	0	72748..73251	+	167	118443016	-	NT01CX_0951	-	hypothetical protein
76	 23.96	-1	73400..74263	+	287	118444357	-	NT01CX_0952	-	chemotaxis response regulator, putative
77	 28.75	0	74263..74742	+	159	118444405	-	NT01CX_0953	-	SPOUT methyltransferase superfamily protein
78	 32.95	+1	75009..76055	+	348	118443992	-	NT01CX_0954	-	regulatory protein
79	 30.54	0	76088..77017	+	309	118444120	panE	NT01CX_0955	-	2-dehydropantoate 2-reductase
80	 27.66	0	77161..78324	+	387	118443720	-	NT01CX_0956	-	HTH-type transcriptional activator tipA, putative
81	 27.52	0	78443..79405	+	320	118444677	-	NT01CX_0957	-	hypothetical protein
82	 28.07	0	79608..80348	+	246	118444270	-	NT01CX_0958	-	maltose transacetylase
83	 33.22	+1	80500..81420	+	306	118443339	-	NT01CX_0959	-	integral membrane protein
84	 31.72	0	81487..82107	-	206	118443004	-	NT01CX_0960	-	hypothetical protein
85	 25.04	-1	82283..82957	+	224	118443560	-	NT01CX_0961	-	transcriptional regulator
86	 29.82	0	83083..83424	+	113	118443149	phnA	NT01CX_0962	-	alkylphosphonate utilization operon protein PhnA
87	 28.81	0	83701..84717	+	338	118443686	-	NT01CX_0963	-	catabolite control protein A
88	 29.97	0	84729..85829	+	366	118443270	-	NT01CX_0964	-	ABC transporter ATPase
89	 32.59	+1	85860..87203	+	447	118444556	-	NT01CX_0965	-	ABC transporter extracellular-binding protein
90	 30.57	0	87257..88123	+	288	118444102	-	NT01CX_0966	-	sugar ABC transporter, permease protein, putative
91	 28.26	0	88123..88950	+	275	118443400	-	NT01CX_0967	-	sugar ABC transporter, permease protein
92	 28.28	0	89062..91119	+	685	118443002	-	NT01CX_0968	-	alpha-glucosidase
93	 31.44	0	91138..92616	+	492	118444261	malQ	NT01CX_0969	-	4-alpha-glucanotransferase
94	 28.07	0	92624..94999	+	791	118443848	-	NT01CX_0970	-	glycogen phosphorylase
95	 28.49	0	95085..96116	-	343	118443187	-	NT01CX_0971	-	ISBma2, transposase
96	 28.66	0	96203..96523	-	106	118444661	-	NT01CX_0972	-	ISBma2, transposase
97	 28.55	0	96696..97280	-	194	118444097	-	NT01CX_0973	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
98	 33.33	+1	97625..98281	+	218	118444509	-	NT01CX_0974	-	nitrite reductase [NAD(P)H], large subunit, putative
99	 23.00	-1	98457..98930	+	157	118443234	-	NT01CX_0975	-	hypothetical protein
100	 28.33	0	98930..99628	+	232	118443679	-	NT01CX_0976	-	transcriptional regulatory protein
28.96	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.