IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.97   STD DEV: 6.10
Burkholderia pseudomallei 1106a chromosome II, complete sequence - 1..3100794
3164 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.79	0	1..1188	+	395	126455556	-	BURPS1106A_A0001	-	hypothetical protein
2	 64.46	0	1282..2325	-	347	126458031	-	BURPS1106A_A0002	-	phage integrase family site specific recombinase
3	 67.72	0	2488..2868	-	126	126457336	-	BURPS1106A_A0003	-	hypothetical protein
4	 68.64	0	2948..3556	-	202	126456620	-	BURPS1106A_A0004	-	DNA-binding cupin domain-containing protein
5	 67.08	0	3734..4933	+	399	161986647	kbl	BURPS1106A_A0005	-	2-amino-3-ketobutyrate coenzyme A ligase
6	 64.44	0	4946..5977	+	343	126458436	tdh	BURPS1106A_A0006	-	L-threonine 3-dehydrogenase
7	 63.79	0	5986..6159	+	57	126457544	-	BURPS1106A_A0007	-	hypothetical protein
8	 67.58	0	6319..6972	-	217	126457736	-	BURPS1106A_A0008	-	putative lipoprotein
9	 61.24	-1	6902..7030	+	42	126456835	-	BURPS1106A_A0009	-	hypothetical protein
10	 70.55	0	7062..7679	+	205	126455905	-	BURPS1106A_A0010	-	TetR family transcriptional regulator
11	 63.55	0	7651..8259	+	202	126456533	-	BURPS1106A_A0012	-	hypothetical protein
12	 66.27	0	8229..8480	-	83	126458201	-	BURPS1106A_A0011	-	ttbk1 protein
13	 67.41	0	8481..9686	-	401	126455860	-	BURPS1106A_A0013	-	succinylglutamate desuccinylase / aspartoacylase family protein
14	 67.67	0	9800..10990	-	396	126457861	-	BURPS1106A_A0014	-	tartrate dehydrogenase
15	 67.32	0	11054..11971	+	305	126457194	-	BURPS1106A_A0015	-	LysR family transcriptional regulator
16	 67.11	0	12520..13197	+	225	126457318	-	BURPS1106A_A0016	-	isoprenylcysteine carboxyl methyltransferase family protein
17	 65.71	0	13422..14045	+	207	126457314	-	BURPS1106A_A0017	-	glutathione S-transferase family protein
18	 64.71	0	14280..14483	-	67	126457661	-	BURPS1106A_A0018	-	hypothetical protein
19	 70.79	0	14480..15013	-	177	126455812	-	BURPS1106A_A0019	-	hypothetical protein
20	 66.18	0	15024..16262	-	412	126456283	-	BURPS1106A_A0020	-	patatin family phospholipase
21	 65.65	0	16259..17044	-	261	126456972	bdhA	BURPS1106A_A0021	-	3-hydroxybutyrate dehydrogenase
22	 62.00	0	17091..18032	-	313	126458128	-	BURPS1106A_A0022	-	acetoacetate decarboxylase
23	 70.91	0	18251..18886	+	211	126458606	-	BURPS1106A_A0023	-	PAP2 family protein
24	 66.24	0	18909..19145	-	78	126455939	-	BURPS1106A_A0024	-	hypothetical protein
25	 65.04	0	19117..19239	+	40	126456798	-	BURPS1106A_A0025	-	hypothetical protein
26	 71.08	0	19339..19587	+	82	126457300	-	BURPS1106A_A0026	-	hypothetical protein
27	 68.36	0	19905..20732	-	275	126455745	-	BURPS1106A_A0027	-	siderophore-interacting protein
28	 68.65	0	20772..21476	-	234	126455522	-	BURPS1106A_A0028	-	PadR family transcriptional regulator
29	 65.25	0	21879..23285	+	468	126458038	-	BURPS1106A_A0029	-	cytochrome P450 family protein
30	 55.22	-2	23435..23635	+	66	126457570	-	BURPS1106A_A0030	-	hypothetical protein
31	 64.44	0	23809..24660	+	283	126456886	-	BURPS1106A_A0031	-	hypothetical protein
32	 66.79	0	24657..25490	+	277	126456742	-	BURPS1106A_A0032	-	hypothetical protein
33	 66.82	0	25487..27430	+	647	126456032	-	BURPS1106A_A0033	-	B12-binding/radical SAM domain-containing protein
34	 68.79	0	27444..28433	+	329	126457311	-	BURPS1106A_A0034	-	hypothetical protein
35	 68.12	0	28605..29225	-	206	126456380	-	BURPS1106A_A0035	-	LysE family translocator protein
36	 69.35	0	29333..30226	+	297	126457404	-	BURPS1106A_A0036	-	chromosome replication initiation inhibitor protein
37	 67.46	0	30293..31048	-	251	126457634	-	BURPS1106A_A0037	-	Crp/FNR family transcriptional regulator
38	 67.52	0	31198..31665	-	155	126458343	-	BURPS1106A_A0038	-	universal stress family protein
39	 63.04	0	31731..31868	-	45	126455787	-	BURPS1106A_A0039	-	hypothetical protein
40	 63.64	0	32089..32319	+	76	126455838	-	BURPS1106A_A0040	-	hypothetical protein
41	 70.31	0	32412..32768	-	118	126456394	-	BURPS1106A_A0041	-	hypothetical protein
42	 69.28	0	32755..33060	-	101	126457094	-	BURPS1106A_A0042	-	hypothetical protein
43	 71.66	0	33094..34674	+	526	126456147	-	BURPS1106A_A0043	-	aldehyde dehydrogenase
44	 66.14	0	34680..35621	+	313	126456167	-	BURPS1106A_A0044	-	gluconolactonase
45	 71.54	0	35670..35936	-	88	126456342	-	BURPS1106A_A0045	-	hypothetical protein
46	 68.38	0	35888..36004	+	38	126457162	-	BURPS1106A_A0046	-	hypothetical protein
47	 69.78	0	36390..36806	-	138	126457738	-	BURPS1106A_A0047	-	hypothetical protein
48	 59.92	-1	37073..37309	+	78	126458547	-	BURPS1106A_A0048	-	hypothetical protein
49	 66.77	0	37433..38356	+	307	126455875	-	BURPS1106A_A0049	-	putative serine O-acetyltransferase
50	 66.79	0	38588..39391	-	267	126457358	-	BURPS1106A_A0050	-	short chain dehydrogenase/reductase family oxidoreductase
51	 67.01	0	39392..40270	-	292	126458073	folE	BURPS1106A_A0051	-	GTP cyclohydrolase I
52	 68.40	0	40258..41181	-	307	126455553	-	BURPS1106A_A0052	-	LysR family transcriptional regulator
53	 68.68	0	41280..42521	+	413	126456279	pobA	BURPS1106A_A0053	-	4-hydroxybenzoate 3-monooxygenase
54	 66.43	0	42594..43442	+	282	126457793	pcaI	BURPS1106A_A0054	-	3-oxoadipate CoA-transferase, A subunit
55	 65.75	0	43461..44117	+	218	126458521	pcaJ	BURPS1106A_A0055	-	3-oxoadipate CoA-transferase, B subunit
56	 72.04	0	44253..45611	+	452	126456258	pcaB	BURPS1106A_A0056	-	3-carboxy-cis,cis-muconate cycloisomerase
57	 67.56	0	45624..46409	+	261	126458130	pcaD	BURPS1106A_A0057	-	3-oxoadipate enol-lactonase
58	 63.82	0	46425..46811	+	128	126457409	pcaC	BURPS1106A_A0058	-	4-carboxymuconolactone decarboxylase
59	 69.10	0	46990..48345	+	451	126457780	pcaK	BURPS1106A_A0059	-	4-hydroxybenzoate transporter
60	 66.67	0	48413..48661	-	82	126456664	-	BURPS1106A_A0060	-	hypothetical protein
61	 63.43	0	48762..49379	-	205	126455627	-	BURPS1106A_A0061	-	LysE family translocator protein
62	 64.35	0	49631..50668	-	345	126458611	-	BURPS1106A_A0062	-	hypothetical protein
63	 63.10	0	50726..51649	-	307	126457435	-	BURPS1106A_A0063	-	hypothetical protein
64	 70.25	0	51765..53021	-	418	126456439	-	BURPS1106A_A0064	-	major facilitator transporter
65	 64.56	0	53008..53625	-	205	126457239	-	BURPS1106A_A0065	-	ChrB protein
66	 73.54	0	53665..53853	-	62	126456522	-	BURPS1106A_A0066	-	hypothetical protein
67	 67.25	0	53838..55028	-	396	126458298	chrA	BURPS1106A_A0067	-	chromate ion transporter protein ChrA
68	 69.41	0	55025..55936	-	303	126458120	chrB	BURPS1106A_A0068	-	chrB protein
69	 69.95	0	56224..56649	-	141	126455609	-	BURPS1106A_A0069	-	hypothetical protein
70	 62.78	0	56947..57486	+	179	126456266	-	BURPS1106A_A0070	-	hypothetical protein
71	 66.67	0	57539..57838	+	99	126457832	-	BURPS1106A_A0071	-	plastocyanin/azurin family copper binding protein
72	 67.10	0	57847..58542	+	231	126458510	-	BURPS1106A_A0072	-	RNA polymerase sigma factor
73	 70.15	0	59019..65012	+	1997	126457810	uvrA	BURPS1106A_A0073	-	excinuclease ABC, A subunit
74	 57.19	-1	65434..65739	+	101	126458381	-	BURPS1106A_A0074	-	hypothetical protein
75	 60.54	-1	65894..66187	-	97	126455970	-	BURPS1106A_A0075	-	KluA
76	 62.85	0	66296..66793	-	165	126456734	-	BURPS1106A_A0076	-	hypothetical protein
77	 58.61	-1	66805..67077	+	90	126455856	-	BURPS1106A_A0077	-	hypothetical protein
78	 53.03	-2	67084..67215	-	43	126458204	-	BURPS1106A_A0078	-	hypothetical protein
79	 59.63	-1	67360..67686	-	108	126457332	-	BURPS1106A_A0079	-	H-NS histone family protein
80	 55.95	-1	67692..67859	-	55	126457643	-	BURPS1106A_A0080	-	hypothetical protein
81	 63.27	0	68210..69562	+	450	126456720	-	BURPS1106A_A0081	-	alpha-ketoglutarate permease
82	 67.03	0	69615..71546	+	643	126456247	-	BURPS1106A_A0082	-	C4-dicarboxylate transport sensor kinase
83	 66.74	0	71530..72876	+	448	126457972	-	BURPS1106A_A0083	-	C4-dicarboxylate transport transcriptional regulatory protein
84	 43.33	-2	74006..74155	+	49	126457236	-	BURPS1106A_A0084	-	hypothetical protein
85	 70.07	0	74338..74895	-	185	126457977	-	BURPS1106A_A0085	-	hypothetical protein
86	 64.53	0	74954..75187	-	77	126457400	-	BURPS1106A_A0086	-	hypothetical protein
87	 68.06	0	75164..77107	+	647	126458415	-	BURPS1106A_A0087	-	hypothetical protein
88	 69.20	0	77359..77871	+	170	126458150	-	BURPS1106A_A0088	-	AraC family transcription regulator
89	 75.44	+1	77905..78018	-	37	126456190	-	BURPS1106A_A0089	-	hypothetical protein
90	 66.67	0	78093..78209	-	38	126456875	-	BURPS1106A_A0090	-	hypothetical protein
91	 67.49	0	78243..80438	+	731	126457597	-	BURPS1106A_A0091	-	non-hemolytic phospholipase C
92	 63.09	0	80843..81205	-	120	126458296	-	BURPS1106A_A0092	-	transposase
93	 62.30	0	81301..81666	-	121	126457653	-	BURPS1106A_A0093	-	putative transposase for insertion sequence
94	 50.47	-2	82340..82975	-	211	126458337	-	BURPS1106A_A0094	-	regulatory protein
95	 51.59	-2	83684..83809	+	41	126458157	-	BURPS1106A_A0095	-	hypothetical protein
96	 57.06	-1	84481..85209	+	242	126455675	-	BURPS1106A_A0096	-	putrescine transport system permease protein PotH
97	 54.67	-2	85469..85618	-	49	126457873	-	BURPS1106A_A0097	-	hypothetical protein
98	 53.68	-2	86047..87078	+	343	126456143	-	BURPS1106A_A0098	-	ABC transport system, exported substrate-binding protein
99	 61.44	-1	87721..88026	+	101	126457035	-	BURPS1106A_A0099	-	H-NS histone family protein
100	 68.68	0	88347..91127	+	926	126457812	-	BURPS1106A_A0100	-	Rhs element Vgr protein
67.97	MEAN

6.10	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.