IslandPath Analysis: Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.77   STD DEV: 6.10
Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633, complete genome - 1..4709075
4500 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 55.58	0	337..2799	+	820	194737774	thrA	SeSA_A0002	-	aspartokinase/homoserine dehydrogenase I
2	 57.96	+1	2801..3730	+	309	194734054	thrB	SeSA_A0003	-	homoserine kinase
3	 56.25	0	3734..5020	+	428	194736906	thrC	SeSA_A0004	-	threonine synthase
4	 50.52	0	5114..5887	-	257	194738139	-	SeSA_A0005	-	protein YaaA
5	 55.76	0	5966..7423	-	485	194735924	-	SeSA_A0006	-	amino-acid carrier protein AlsT
6	 53.77	0	7665..8618	+	317	194736669	tal2	SeSA_A0007	-	transaldolase
7	 55.50	0	8729..9319	+	196	194734929	mog	SeSA_A0008	-	molybdopterin biosynthesis protein Mog
8	 53.62	0	9376..9942	-	188	194735180	-	SeSA_A0009	-	membrane protein, GPR1/FUN34/yaaH family
9	 54.06	0	10092..10805	-	237	194737389	-	SeSA_A0010	-	positive regulator for sigma H
10	 50.00	0	10841..11236	-	131	194737872	-	SeSA_A0011	-	protein YaaI
11	 31.75	-2	11300..11425	+	41	194737078	-	SeSA_A0012	-	hypothetical protein
12	 52.58	0	11594..13510	+	638	194735871	dnaK	SeSA_A0013	-	chaperone protein DnaK
13	 53.77	0	13596..14735	+	379	194733969	dnaJ	SeSA_A0014	-	chaperone protein DnaJ
14	 28.07	-2	14847..14960	+	37	194734577	-	SeSA_A0015	-	hypothetical protein
15	 41.03	-1	15016..15963	+	315	194735063	-	SeSA_A0016	-	putative transcriptional regulator
16	 39.27	-2	16132..16434	+	100	194735831	-	SeSA_A0017	-	putative bacteriophage protein
17	 51.31	0	16495..17028	-	177	194734342	-	SeSA_A0018	-	hypothetical protein
18	 38.96	-2	17045..17488	-	147	194734496	-	SeSA_A0019	-	hypothetical protein
19	 51.00	0	17869..19968	+	699	194737593	-	SeSA_A0020	-	exochitinase
20	 54.79	0	20061..23057	+	998	194738313	-	SeSA_A0021	-	putative hydroxymethyltransferase
21	 46.90	0	23349..24041	+	230	194738006	-	SeSA_A0022	-	putative cytoplasmic protein
22	 51.57	0	24472..25014	+	180	194737212	-	SeSA_A0023	-	fimbrial subunit
23	 51.09	0	25116..25802	+	228	194735713	-	SeSA_A0024	-	chaperone protein FimC
24	 54.14	0	25762..28428	+	888	194733954	-	SeSA_A0025	-	outer membrane usher protein FimD
25	 50.40	0	28429..29436	+	335	194735351	-	SeSA_A0026	-	mannose binding protein FimH
26	 49.22	0	29467..29982	+	171	194737224	-	SeSA_A0027	-	fimbrial subunit
27	 55.49	0	29998..30516	+	172	194736987	-	SeSA_A0028	-	fimbrial subunit
28	 54.20	0	30476..31213	+	245	194736384	-	SeSA_A0029	-	fimbrial chaperone
29	 41.67	-1	32162..32449	+	95	194734689	-	SeSA_A0031	-	hypothetical protein
30	 37.11	-2	32549..32998	-	149	194734441	-	SeSA_A0032	-	hypothetical protein
31	 38.91	-2	33368..34372	+	334	194734337	-	SeSA_A0033	-	putative transcriptional regulator
32	 35.84	-2	34380..34817	-	145	194735987	-	SeSA_A0034	-	putative transcription regulator
33	 33.33	-2	34829..34975	+	48	194735377	-	SeSA_A0035	-	hypothetical protein
34	 46.19	0	35340..37058	+	572	194736972	-	SeSA_A0036	-	arylsulfotransferase
35	 46.88	0	37104..38675	-	523	194736342	-	SeSA_A0037	-	5'-Nucleotidase domain protein
36	 43.96	-1	38774..39535	-	253	194737923	-	SeSA_A0038	-	putative outer membrane/exported protein
37	 32.80	-2	39843..40028	-	61	194734974	-	SeSA_A0039	-	hypothetical protein
38	 52.48	0	40130..41623	+	497	194734352	-	SeSA_A0040	-	sulfatase
39	 49.62	0	41722..42912	+	396	194735938	-	SeSA_A0041	-	chondroitin sulfate/heparin utilization regulation protein
40	 49.76	0	42937..44184	+	415	194735317	-	SeSA_A0042	-	putative cytoplasmic protein
41	 49.83	0	44311..46026	+	571	194735149	-	SeSA_A0043	-	arylsulfotransferase
42	 56.47	0	46189..47355	+	388	194736826	nhaA	SeSA_A0044	-	Na+/H+ antiporter NhaA
43	 50.56	0	47417..48316	+	299	194736409	-	SeSA_A0045	-	transcriptional activator protein NhaR
44	 54.46	0	48371..50410	-	679	194737987	-	SeSA_A0046	-	glycoside hydrolase, family 31
45	 49.20	0	50450..51823	-	457	194738222	-	SeSA_A0047	-	xylose-proton symporter
46	 46.59	0	52284..52547	-	87	194737585	rpsT	SeSA_A0048	-	ribosomal protein S20
47	 56.76	0	52876..53814	+	312	194734968	ribF	SeSA_A0049	-	riboflavin biosynthesis protein RibF
48	 54.68	0	53823..56693	+	956	194734368	ileS	SeSA_A0050	-	isoleucyl-tRNA synthetase
49	 52.10	0	56693..57193	+	166	194735705	lspA	SeSA_A0051	-	signal peptidase II
50	 56.06	0	57207..57338	+	43	194735100	-	SeSA_A0052	-	hypothetical protein
51	 54.67	0	57348..57797	+	149	194737896	fkpB	SeSA_A0053	-	FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase
52	 57.62	0	57800..58750	+	316	194735346	ispH	SeSA_A0054	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
53	 41.86	-1	58862..58990	-	42	194734702	-	SeSA_A0055	-	hypothetical protein
54	 48.26	0	59001..60152	+	383	194734594	-	SeSA_A0056	-	hypothetical protein
55	 58.09	+1	60168..61088	+	306	194734027	-	SeSA_A0057	-	Non-specific ribonucleoside hydrolase RihC
56	 48.33	0	61110..61796	-	228	194735861	-	SeSA_A0058	-	transcriptional regulatory protein CitB
57	 47.38	0	61798..63456	-	552	194735213	-	SeSA_A0059	-	sensor kinase DpiB
58	 63.67	+1	63552..64853	-	433	194737067	-	SeSA_A0060	-	oxaloacetate decarboxylase beta chain
59	 63.39	+1	64866..66635	-	589	194736505	oadA	SeSA_A0061	-	oxaloacetate decarboxylase alpha subunit
60	 56.25	0	66651..66890	-	79	194738402	-	SeSA_A0062	-	hypothetical protein
61	 49.22	0	67049..68389	-	446	194737947	-	SeSA_A0063	-	citrate-sodium symporter
62	 53.59	0	68646..69677	+	343	194734877	citC	SeSA_A0064	-	[citrate (pro-3S)-lyase] ligase
63	 56.80	0	69707..70000	+	97	194734690	citD	SeSA_A0065	-	citrate lyase acyl carrier protein
64	 55.29	0	69997..70866	+	289	194734726	citE	SeSA_A0066	-	citrate (pro-3S)-lyase, beta subunit
65	 55.36	0	70877..72397	+	506	194737324	citF	SeSA_A0067	-	citrate lyase, alpha subunit
66	 55.98	0	72397..72948	+	183	194734188	citX	SeSA_A0068	-	holo-ACP synthase CitX
67	 55.01	0	72926..73834	+	302	194734090	citG	SeSA_A0069	-	triphosphoribosyl-dephospho-CoA synthase CitG
68	 55.96	0	74014..74835	+	273	194735525	dapB	SeSA_A0070	-	dihydrodipicolinate reductase
69	 46.67	0	74962..75126	-	54	194736161	-	SeSA_A0071	-	hypothetical protein
70	 48.48	0	75104..75235	-	43	194736240	-	SeSA_A0072	-	hypothetical protein
71	 33.33	-2	75520..75663	+	47	194736367	-	SeSA_A0073	-	hypothetical protein
72	 55.61	0	75873..77021	+	382	194738235	carA	SeSA_A0074	-	carbamoyl-phosphate synthase, small subunit
73	 58.67	+1	77040..80267	+	1075	194735374	carB	SeSA_A0075	-	carbamoyl-phosphate synthase, large subunit
74	 55.95	0	81013..81609	-	198	194734318	-	SeSA_A0077	-	carnitine operon protein CaiE
75	 56.74	0	81719..82504	-	261	194735120	-	SeSA_A0078	-	carnitinyl-CoA dehydratase
76	 50.77	0	82558..84111	-	517	194734469	-	SeSA_A0079	-	probable crotonobetaine/carnitine-CoA ligase
77	 53.54	0	84174..85445	-	423	194734131	caiB	SeSA_A0080	-	crotonobetainyl-CoA:carnitine CoA-transferase
78	 52.41	0	85503..86645	-	380	194738236	caiA	SeSA_A0081	-	crotonobetainyl-CoA dehydrogenase
79	 53.62	0	86680..88197	-	505	194737616	caiT	SeSA_A0082	-	L-carnitine/gamma-butyrobetaine antiporter
80	 26.50	-2	88339..88455	+	38	194737405	-	SeSA_A0083	-	hypothetical protein
81	 28.49	-2	88425..88610	+	61	194736996	-	SeSA_A0084	-	hypothetical protein
82	 51.88	0	88678..89448	+	256	194737337	fixA	SeSA_A0085	-	protein FixA
83	 59.13	+1	89464..90405	+	313	194738218	fixB	SeSA_A0086	-	electron transfer flavoprotein, alpha subunit
84	 55.94	0	90455..91741	+	428	194734230	fixC	SeSA_A0087	-	protein FixC
85	 54.86	0	91738..92025	+	95	194734964	-	SeSA_A0088	-	4Fe-4S ferredoxin, iron-sulfur binding domain protein
86	 54.16	0	92106..93512	+	468	194735488	-	SeSA_A0089	-	putative metabolite transport protein YaaU
87	 48.48	0	93601..93831	+	76	194736265	-	SeSA_A0090	-	hypothetical protein
88	 46.57	0	94125..94547	+	140	194736735	-	SeSA_A0091	-	probable secreted protein
89	 52.99	0	94551..94667	-	38	194736269	-	SeSA_A0092	-	hypothetical protein
90	 47.77	0	94771..95061	-	96	194734678	-	SeSA_A0093	-	probable secreted protein
91	 46.88	0	95959..97848	+	629	194735205	-	SeSA_A0094	-	sulfatase
92	 53.11	0	98402..98932	+	176	194735745	kefF	SeSA_A0095	-	glutathione-regulated potassium-efflux system ancillary protein kefF
93	 58.24	+1	98925..100787	+	620	194737490	-	SeSA_A0096	-	glutathione-regulated potassium-efflux system protein KefC
94	 40.48	-1	100784..100909	-	41	194736837	-	SeSA_A0097	-	hypothetical protein
95	 53.75	0	100986..101465	+	159	194738108	folA	SeSA_A0098	-	dihydrofolate reductase
96	 56.42	0	101573..102421	-	282	194734768	-	SeSA_A0099	-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
97	 55.03	0	102432..102809	-	125	194734186	apaG	SeSA_A0100	-	protein ApaG
98	 52.68	0	102812..103633	-	273	194734867	ksgA	SeSA_A0101	-	dimethyladenosine transferase
99	 58.59	+1	103630..104619	-	329	194735540	pdxA	SeSA_A0102	-	4-hydroxythreonine-4-phosphate dehydrogenase
100	 54.55	0	104619..105905	-	428	194736155	surA	SeSA_A0103	-	chaperone/peptidyl-prolyl cis-trans isomerase SurA
51.77	MEAN

6.10	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.