IslandPath Analysis: Actinobacillus succinogenes 130Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.47   STD DEV: 4.33
Actinobacillus succinogenes 130Z, complete genome - 1..2319663
2079 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 43.71	0	252..1619	+	455	152977689	-	Asuc_0001	-	chromosomal replication initiation protein
2	 45.69	0	1638..2738	+	366	152977690	-	Asuc_0002	-	DNA polymerase III subunit beta
3	 44.38	0	2768..3844	+	358	152977691	-	Asuc_0003	-	recombination protein F
4	 39.30	-1	3875..4477	+	200	152977692	-	Asuc_0004	-	hypothetical protein
5	 44.19	0	4586..6280	-	564	152977693	-	Asuc_0005	-	D-lactate dehydrogenase
6	 45.14	0	6429..8249	-	606	152977694	-	Asuc_0006	-	potassium efflux system protein
7	 43.48	0	8381..9139	-	252	152977695	-	Asuc_0007	-	methyltransferase type 11
8	 46.19	0	9268..9936	-	222	152977696	-	Asuc_0008	-	cAMP-regulatory protein
9	 39.64	-1	9964..10185	-	73	152977697	-	Asuc_0009	-	hypothetical protein
10	 44.70	0	10207..10857	-	216	152977698	-	Asuc_0010	-	nucleoid occlusion protein
11	 45.83	0	10860..11315	-	151	152977699	-	Asuc_0011	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
12	 50.00	+1	11366..12565	-	399	152977700	-	Asuc_0012	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
13	 45.55	0	12731..13393	+	220	152977701	-	Asuc_0013	-	DNA repair protein RadC
14	 46.41	0	13616..13852	+	78	152977702	-	Asuc_0014	-	50S ribosomal protein L28
15	 36.84	-1	13864..14034	+	56	152977703	-	Asuc_0015	-	50S ribosomal protein L33
16	 45.26	0	14157..14969	+	270	152977704	-	Asuc_0016	-	formamidopyrimidine-DNA glycosylase
17	 46.60	0	15105..16001	+	298	152977705	-	Asuc_0017	-	dihydrodipicolinate synthase
18	 47.31	0	16119..17120	+	333	152977706	-	Asuc_0018	-	NlpB/DapX family lipoprotein
19	 47.26	0	17174..17884	+	236	152977707	-	Asuc_0019	-	methyltransferase type 12
20	 45.50	0	18048..19436	+	462	152977708	-	Asuc_0020	-	anion transporter
21	 48.00	0	19519..22389	-	956	152977709	-	Asuc_0021	-	DNA polymerase I
22	 43.08	0	22496..24280	-	594	152977710	-	Asuc_0022	-	ABC transporter
23	 46.35	0	24449..26107	+	552	152977711	-	Asuc_0023	-	hypothetical protein
24	 46.26	0	26199..27521	+	440	152977712	-	Asuc_0024	-	ATP-dependent RNA helicase SrmB
25	 32.53	-2	27582..27830	-	82	152977713	-	Asuc_0025	-	XRE family transcriptional regulator
26	 37.58	-1	27913..28218	+	101	152977714	-	Asuc_0026	-	putative lipoprotein
27	 42.11	0	28289..29656	-	455	152977715	-	Asuc_0027	-	adenylosuccinate lyase
28	 41.79	0	29670..30284	-	204	152977716	-	Asuc_0028	-	hypothetical protein
29	 43.06	0	32145..33491	+	448	152977717	-	Asuc_0030	-	phage integrase family protein
30	 39.82	-1	39519..40073	-	184	152977718	-	Asuc_0031	-	D,D-heptose 1,7-bisphosphate phosphatase
31	 42.39	0	40240..41277	+	345	152977719	-	Asuc_0032	-	DL-methionine transporter ATP-binding subunit
32	 44.06	0	41267..41956	+	229	152977720	-	Asuc_0033	-	binding-protein-dependent transport systems inner membrane component
33	 41.67	0	41979..42770	+	263	152977721	-	Asuc_0034	-	YaeC family lipoprotein
34	 49.12	0	42875..43609	-	244	152977722	-	Asuc_0035	-	hypothetical protein
35	 48.41	0	43624..44598	-	324	152977723	-	Asuc_0036	-	23S rRNA pseudouridine synthase D
36	 45.39	0	44694..45506	+	270	152977724	-	Asuc_0037	-	TPR repeat-containing protein
37	 45.61	0	45631..46893	-	420	152977725	-	Asuc_0038	-	transcription termination factor Rho
38	 47.18	0	47081..48322	+	413	152977726	-	Asuc_0039	-	ATP-dependent RNA helicase RhlB
39	 45.68	0	48471..52730	-	1419	152977727	-	Asuc_0040	-	DNA-directed RNA polymerase subunit beta'
40	 44.60	0	52868..56896	-	1342	152977728	-	Asuc_0041	-	DNA-directed RNA polymerase subunit beta
41	 44.17	0	57206..57574	-	122	152977729	-	Asuc_0042	-	50S ribosomal protein L7/L12
42	 43.90	0	57632..58123	-	163	152977730	-	Asuc_0043	-	50S ribosomal protein L10
43	 43.48	0	58416..59105	-	229	152977731	-	Asuc_0044	-	ribosomal protein L1
44	 43.82	0	59110..59538	-	142	152977732	-	Asuc_0045	-	50S ribosomal protein L11
45	 32.02	-2	59773..60534	-	253	152977733	-	Asuc_0046	-	hypothetical protein
46	 46.24	0	60767..61324	-	185	152977734	-	Asuc_0047	-	transcription antitermination protein NusG
47	 40.88	-1	61326..61736	-	136	152977735	-	Asuc_0048	-	preprotein translocase subunit SecE
48	 44.37	0	61897..62784	-	295	152977736	-	Asuc_0049	-	UTP-glucose-1-phosphate uridylyltransferase
49	 44.40	0	62868..64232	-	454	152977737	-	Asuc_0050	-	phosphomannomutase
50	 41.40	0	64245..64430	-	61	152977738	-	Asuc_0051	-	carbon storage regulator
51	 46.48	0	64507..67131	-	874	152977739	-	Asuc_0052	-	alanyl-tRNA synthetase
52	 42.02	0	67295..67720	-	141	152977740	-	Asuc_0053	-	UspA domain-containing protein
53	 47.07	0	67958..68743	+	261	152977741	-	Asuc_0054	-	nucleoside triphosphate pyrophosphohydrolase
54	 44.19	0	68865..70034	-	389	152977742	-	Asuc_0055	-	UDP-glucose/GDP-mannose dehydrogenase
55	 44.46	0	70053..72371	-	772	152977743	-	Asuc_0056	-	hypothetical protein
56	 45.46	0	72391..74253	-	620	152977744	-	Asuc_0057	-	ABC transporter related
57	 47.12	0	74265..75446	-	393	152977745	-	Asuc_0058	-	glycosyl transferase group 1
58	 45.61	0	75462..76691	-	409	152977746	-	Asuc_0059	-	glycosyl transferase group 1
59	 44.70	0	76728..77915	-	395	152977747	-	Asuc_0060	-	hypothetical protein
60	 47.07	0	78106..79248	+	380	152977748	-	Asuc_0061	-	porin
61	 47.77	0	79311..80183	-	290	152977749	-	Asuc_0062	-	2,5-didehydrogluconate reductase
62	 52.14	+1	80339..81274	-	311	152977750	-	Asuc_0063	-	AraC family transcriptional regulator
63	 46.76	0	81435..82283	+	282	152977751	-	Asuc_0064	-	hypothetical protein
64	 45.45	0	82331..82957	-	208	152977752	-	Asuc_0065	-	HhH-GPD family protein
65	 50.12	+1	83452..84291	-	279	152977753	-	Asuc_0066	-	S-formylglutathione hydrolase
66	 51.39	+1	84293..85411	-	372	152977754	-	Asuc_0067	-	S-(hydroxymethyl)glutathione dehydrogenase
67	 41.83	0	85589..86047	-	152	152977755	-	Asuc_0068	-	hypothetical protein
68	 47.20	0	86366..87079	-	237	152977756	-	Asuc_0069	-	hypothetical protein
69	 41.72	0	87270..87698	-	142	152977757	-	Asuc_0070	-	hypothetical protein
70	 48.39	0	87695..88252	-	185	152977758	-	Asuc_0071	-	isoleucine patch superfamily acetyltransferase
71	 47.93	0	88495..89631	-	378	152977759	-	Asuc_0072	-	alpha/beta fold family hydrolase
72	 51.89	+1	89887..91206	+	439	152977760	-	Asuc_0073	-	recombination factor protein RarA
73	 50.90	+1	91356..92300	+	314	152977761	-	Asuc_0074	-	potassium-tellurite ethidium and proflavin transporter
74	 46.75	0	92335..92841	-	168	152977762	-	Asuc_0075	-	TetR family transcriptional regulator
75	 55.39	+2	92974..93177	+	67	152977763	-	Asuc_0076	-	17 kDa surface antigen
76	 53.52	+1	93402..93728	+	108	152977764	-	Asuc_0077	-	17 kDa surface antigen
77	 48.23	0	93914..94819	+	301	152977765	-	Asuc_0078	-	LysR family transcriptional regulator
78	 48.33	0	94844..96010	-	388	152977766	-	Asuc_0079	-	Bcr/CflA subfamily drug resistance transporter
79	 51.74	+1	96380..97270	+	296	152977767	-	Asuc_0080	-	LysR family transcriptional regulator
80	 46.07	0	97353..98294	-	313	152977768	-	Asuc_0081	-	monosaccharide-transporting ATPase
81	 45.70	0	98454..99941	+	495	152977769	-	Asuc_0082	-	ABC transporter related
82	 48.69	0	99958..100986	+	342	152977770	-	Asuc_0083	-	monosaccharide-transporting ATPase
83	 51.48	+1	100990..102444	+	484	152977771	-	Asuc_0084	-	carbohydrate kinase FGGY
84	 51.70	+1	102598..104274	-	558	152977772	-	Asuc_0085	-	PTS system, fructose subfamily, IIC subunit
85	 48.94	0	104279..105220	-	313	152977773	-	Asuc_0086	-	1-phosphofructokinase
86	 50.43	+1	105223..106725	-	500	152977774	-	Asuc_0087	-	bifunctional fructose-specific PTS IIA/HPr protein
87	 46.39	0	106802..107314	-	170	152977775	-	Asuc_0088	-	hypothetical protein
88	 49.11	0	107448..107783	+	111	152977776	-	Asuc_0089	-	rhodanese domain-containing protein
89	 44.25	0	107762..108100	-	112	152977777	-	Asuc_0090	-	hypothetical protein
90	 45.55	0	108121..108996	+	291	152977778	-	Asuc_0091	-	rhomboid family protein
91	 44.93	0	109027..109785	+	252	152977779	-	Asuc_0092	-	DeoR family transcriptional regulator
92	 48.95	0	110602..111786	-	394	152977780	-	Asuc_0094	-	elongation factor Tu
93	 42.35	0	112470..113423	+	317	152977781	-	Asuc_0095	-	pantothenate kinase
94	 44.89	0	113571..115682	-	703	152977782	-	Asuc_0096	-	non-specific protein-tyrosine kinase
95	 45.50	0	115865..117031	-	388	152977783	-	Asuc_0097	-	polysaccharide export protein
96	 43.35	0	117052..118977	-	641	152977784	-	Asuc_0098	-	polysaccharide biosynthesis protein CapD
97	 45.94	0	118992..120173	-	393	152977785	-	Asuc_0099	-	DegT/DnrJ/EryC1/StrS aminotransferase
98	 41.55	0	120207..120851	-	214	152977786	-	Asuc_0100	-	HAD family hydrolase
99	 44.51	0	120841..121806	-	321	152977787	-	Asuc_0101	-	putative carbamoyl phosphate synthase large subunit
100	 44.50	0	121803..122402	-	199	152977788	-	Asuc_0102	-	undecaprenyl-phosphate galactose phosphotransferase
45.47	MEAN

4.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.