version 1.0
Metallosphaera sedula DSM 5348, complete genome - 1..2191517 2256 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 48.87 0 331..1521 + 396 146302786 - Msed_0001 - ORC complex protein Cdc6/Orc1 2 48.17 0 1499..2017 + 172 146302787 - Msed_0002 - hypothetical protein 3 48.08 0 2038..2973 - 311 146302788 - Msed_0003 - thioesterase superfamily protein 4 46.02 0 2970..3434 - 154 146302789 - Msed_0004 - nicotinamide-nucleotide adenylyltransferase 5 44.15 0 3446..4249 - 267 146302790 - Msed_0005 - hypothetical protein 6 46.45 0 4230..4778 - 182 146302791 - Msed_0006 - adenylate cyclase 7 45.40 0 4779..5789 + 336 146302792 - Msed_0007 - ribosomal RNA methyltransferase NOP2 8 46.07 0 5768..6238 + 156 146302793 - Msed_0008 - hypothetical protein 9 47.90 0 6305..7279 + 324 146302794 radA Msed_0009 - DNA repair and recombination protein RadA 10 43.14 0 7314..7823 + 169 146302795 - Msed_0010 - histidine triad (HIT) protein 11 44.33 0 7850..9058 + 402 146302796 - Msed_0011 - threonine dehydratase 12 42.35 0 9305..9925 + 206 146302797 - Msed_0012 - prephenate dehydratase 13 42.86 0 9918..10883 - 321 146302798 - Msed_0013 - AsnC family transcriptional regulator 14 46.13 0 10929..12335 - 468 146302799 - Msed_0014 - FAD dependent oxidoreductase 15 44.48 0 12337..13350 - 337 146302800 - Msed_0015 - adenylosuccinate synthetase 16 44.06 0 13486..14529 - 347 146302801 purP Msed_0016 - 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein 17 44.34 0 14526..15524 - 332 146302802 purP Msed_0017 - 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase 18 45.90 0 15575..16951 + 458 146302803 - Msed_0018 - adenylosuccinate lyase 19 40.98 -1 17075..18016 + 313 146302804 - Msed_0019 - AIR synthase-like protein 20 44.44 0 18084..19829 + 581 146302805 - Msed_0020 - radical SAM domain-containing protein 21 42.03 -1 19852..20472 - 206 146302806 - Msed_0021 - hypothetical protein 22 40.19 -1 20640..21164 - 174 146302807 - Msed_0022 - hypothetical protein 23 42.09 -1 21161..21868 - 235 146302808 - Msed_0023 - phosphoribosyltransferase 24 43.28 0 21947..23374 - 475 146302809 gatB Msed_0024 - aspartyl/glutamyl-tRNA amidotransferase subunit B 25 46.17 0 23377..23781 - 134 146302810 - Msed_0025 - cytidine deaminase 26 42.59 0 23756..24403 - 215 146302811 upp Msed_0026 - uracil phosphoribosyltransferase 27 43.21 0 24408..24650 - 80 146302812 rps28e Msed_0027 - 30S ribosomal protein S28e 28 42.47 0 24724..24909 + 61 146302813 - Msed_0028 - 50S ribosomal protein L24E 29 45.15 0 24911..25333 + 140 146302814 - Msed_0029 - nucleoside diphosphate kinase 30 43.26 0 25323..27116 - 597 146302815 - Msed_0030 - translation initiation factor IF-2 31 46.15 0 27200..28486 + 428 146302816 - Msed_0031 - malate dehydrogenase 32 43.65 0 28542..28793 + 83 146302817 rpoH Msed_0032 - DNA-directed RNA polymerase subunit H 33 43.64 0 28796..32170 + 1124 146302818 - Msed_0033 - DNA-directed RNA polymerase subunit beta 34 45.43 0 32163..34823 + 886 146302819 - Msed_0034 - DNA-directed RNA polymerase subunit alpha 35 42.58 0 34829..36007 + 392 146302820 - Msed_0035 - DNA-directed RNA polymerase subunit A'' 36 41.35 -1 36015..36326 + 103 146302821 - Msed_0036 - 50S ribosomal protein L30e 37 37.96 -2 36339..36770 + 143 146302822 - Msed_0037 - transcription elongation factor NusA-like protein 38 44.67 0 36782..37222 + 146 146302823 rps12P Msed_0038 - 30S ribosomal protein S12P 39 38.71 -1 37242..37706 - 154 146302824 - Msed_0039 - hypothetical protein 40 44.96 0 37794..38378 + 194 146302825 - Msed_0040 - 30S ribosomal protein S7P 41 45.34 0 38432..39739 + 435 146302826 - Msed_0041 - elongation factor 1-alpha 42 43.69 0 39760..40068 + 102 146302827 rps10p Msed_0042 - 30S ribosomal protein S10P 43 41.63 -1 40201..41490 + 429 146302828 - Msed_0043 - hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase 44 35.85 -2 41464..42219 - 251 146302829 - Msed_0044 - hypothetical protein 45 40.60 -1 42263..42730 + 155 146302830 - Msed_0045 - hypothetical protein 46 47.06 0 42768..43430 + 220 146302831 - Msed_0046 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 47 49.89 0 43427..43897 + 156 146302832 - Msed_0047 - riboflavin synthase 48 50.22 0 43878..44333 + 151 146302833 ribH Msed_0048 - riboflavin synthase subunit beta 49 46.61 0 44339..45031 + 230 146302834 - Msed_0049 - GTP cyclohydrolase IIA 50 45.59 0 45010..46110 + 366 146302835 - Msed_0050 - amidohydrolase 51 45.03 0 46082..46825 - 247 146302836 - Msed_0051 - DNA polymerase sliding clamp subunit B 52 42.39 0 46825..47133 - 102 146302837 - Msed_0052 - hypothetical protein 53 44.28 0 47130..48773 - 547 146302838 - Msed_0053 - hypothetical protein 54 47.83 0 48813..51530 + 905 146302839 - Msed_0054 - DEAD/DEAH box helicase domain-containing protein 55 44.33 0 51572..51862 + 96 146302840 - Msed_0055 - 50S ribosomal protein L14e 56 47.84 0 51863..52117 + 84 146302841 - Msed_0056 - DKCLD domain-containing protein 57 49.00 0 52182..52883 + 233 146302842 - Msed_0057 - PUA domain-containing protein 58 48.48 0 52871..53431 + 186 146302843 - Msed_0058 - methyltransferase small 59 43.21 0 54355..55953 - 532 146302844 - Msed_0059 - hypothetical protein 60 51.09 +1 57034..58632 + 532 146302845 - Msed_0060 - hypothetical protein 61 46.33 0 58947..59246 + 99 146302846 - Msed_0061 - 50S ribosomal protein L21e 62 45.43 0 59260..59598 + 112 146302847 - Msed_0062 - DNA-directed RNA polymerase, subunit F 63 47.33 0 59643..60278 + 211 146302848 - Msed_0063 - hypothetical protein 64 44.50 0 60275..60928 + 217 146302849 ksgA Msed_0064 - dimethyladenosine transferase 65 48.00 0 60880..61479 + 199 146302850 - Msed_0065 - putative methylase 66 46.70 0 61451..62146 + 231 146302851 - Msed_0066 - tRNA/rRNA methyltransferase (SpoU) 67 44.55 0 62180..62830 + 216 146302852 - Msed_0067 - 30S ribosomal protein S3Ae 68 46.09 0 62802..64016 + 404 146302853 - Msed_0068 - nucleotidyl transferase 69 45.55 0 64095..65297 - 400 146302854 - Msed_0069 - translation-associated GTPase 70 46.70 0 65368..66018 + 216 146302855 - Msed_0070 - 50S ribosomal protein L15e 71 38.74 -1 66024..66467 + 147 146302856 - Msed_0071 - hypothetical protein 72 41.11 -1 66442..66981 + 179 146302857 - Msed_0072 - hypothetical protein 73 39.91 -1 66962..67387 + 141 146302858 - Msed_0073 - ribonuclease P-related protein 74 46.20 0 67481..68203 + 240 146302859 - Msed_0074 - proteasome subunit alpha 75 42.35 0 68218..68916 + 232 146302860 - Msed_0075 - putative RNA-associated protein 76 43.55 0 68918..69661 + 247 146302861 - Msed_0076 - exosome complex RNA-binding protein Rrp4 77 45.93 0 69627..70364 + 245 146302862 - Msed_0077 - exosome complex exonuclease Rrp41 78 45.20 0 70366..71208 + 280 146302863 - Msed_0078 - exosome complex RNA-binding protein Rrp42 79 48.40 0 71208..71426 + 72 146302864 rpl37ae Msed_0079 - 50S ribosomal protein L37Ae 80 39.58 -1 71431..71910 + 159 146302865 - Msed_0080 - ribosomal biogenesis protein, containing Brix domain 81 32.92 -2 71907..72149 + 80 146302866 - Msed_0081 - hypothetical protein 82 41.60 -1 72127..72513 + 128 146302867 - Msed_0082 - prefoldin subunit beta 83 41.41 -1 72547..73239 + 230 146302868 - Msed_0083 - ERCC4 domain-containing protein 84 45.32 0 73404..75614 + 736 146302869 - Msed_0084 - elongation factor EF-2 85 41.32 -1 75621..76346 + 241 146302870 - Msed_0085 - HAD family hydrolase 86 43.22 0 76329..77633 - 434 146302871 - Msed_0086 - aminopeptidase 87 43.80 0 77668..78240 + 190 146302872 - Msed_0087 - hypothetical protein 88 45.60 0 78253..79263 + 336 146302873 - Msed_0088 - 3-isopropylmalate dehydrogenase 89 43.58 0 79263..82463 + 1066 146302874 ileS Msed_0089 - isoleucyl-tRNA synthetase 90 43.90 0 82464..83192 + 242 146302875 - Msed_0090 - hypothetical protein 91 44.64 0 83347..84372 + 341 146302876 rpl3p Msed_0091 - 50S ribosomal protein L3P 92 44.19 0 84378..85169 + 263 146302877 rpl4lp Msed_0092 - 50S ribosomal protein L4P 93 42.28 -1 85166..85411 + 81 146302878 - Msed_0093 - 50S ribosomal protein L23P 94 44.91 0 85421..86137 + 238 146302879 rpl2p Msed_0094 - 50S ribosomal protein L2P 95 42.32 -1 86170..86592 + 140 146302880 rps19p Msed_0095 - 30S ribosomal protein S19P 96 41.83 -1 86598..87068 + 156 146302881 rpl22p Msed_0096 - 50S ribosomal protein L22P 97 43.98 0 87072..87794 + 240 146302882 rps3p Msed_0097 - 30S ribosomal protein S3P 98 40.10 -1 87775..87981 + 68 146302883 - Msed_0098 - 50S ribosomal protein L29 99 37.65 -2 87968..88222 + 84 146302884 - Msed_0099 - ribonuclease P, Rpp29 100 44.35 0 88227..88562 + 111 146302885 rps17p Msed_0100 - 30S ribosomal protein S17P 46.47 MEAN 4.15 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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