IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.00	-2	5531..6823	-	430	77461966	-	RSP_1426	-	RNA-binding region RNP-1
2	 46.72	-2	6925..7335	+	136	77461967	-	RSP_1427	-	hypothetical protein
3	 73.63	+1	8012..9433	+	473	77461968	-	RSP_1428	-	Pre (Mob) type recombination enzyme
4	 63.61	-1	9690..11195	+	501	77461969	-	RSP_1430	-	hypothetical protein
5	 69.49	0	11361..11714	-	117	77461970	-	RSP_1432	-	hypothetical protein
6	 63.38	-1	12125..12823	-	232	77461971	-	RSP_1433	-	hypothetical protein
7	 67.38	0	12843..13823	-	326	77461972	-	RSP_1434	-	putative Zn-dependent oxidoreductase
8	 64.24	-1	13839..14498	-	219	77461973	-	RSP_1435	-	TetR family regulatory protein
9	 66.86	0	15031..16614	+	527	77461974	-	RSP_1436	-	ABC transporter ATPase
10	 69.79	0	16988..17755	-	255	77461975	-	RSP_1437	-	ABC Fe+3 hydroxamate (ferrichrome) transporter, ATPase subunit
11	 74.76	+1	17752..19728	-	658	77461976	-	RSP_1438	-	iron-hydroxamate transporter permease subunit
12	 74.33	+1	19725..20624	-	299	77461977	-	RSP_1439	-	ABC Fe+3 hydroxamate (ferrichrome) transporter, periplasmic siderophore binding protein
13	 66.57	0	20618..22717	-	699	77461978	-	RSP_1440	-	TonB dependent, hydroxamate-type ferrisiderophore, outer membrane receptor
14	 69.89	0	23029..24177	+	382	77461979	-	RSP_1441	-	GntR family regulatory protein
15	 64.92	0	24295..25551	+	418	77461980	-	RSP_1442	-	ABC sugar transporter, periplasmic sugar-binding protein
16	 62.83	-1	25619..26530	+	303	77461981	-	RSP_1443	-	ABC sugar transporter, inner membrane subunit
17	 63.49	-1	26527..27375	+	282	77461982	-	RSP_1444	-	ABC sugar transporter, inner membrane subunit
18	 67.75	0	27395..28498	+	367	77461983	-	RSP_1445	-	ABC sugar transporter, ATPase subunit
19	 73.89	+1	28495..29436	+	313	77461984	-	RSP_1446	-	putative sugar kinase
20	 70.45	0	29463..30467	+	334	77461985	-	RSP_1447	-	glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
21	 70.88	0	30522..31541	+	339	77461986	-	RSP_1448	-	L-threonine aldolase
22	 68.74	0	31726..32496	-	256	77461987	-	RSP_1449	-	DeoR family transcriptional regulator
23	 68.68	0	32769..33563	+	264	77461988	-	RSP_1450	-	inositol monophosphatase family protein
24	 65.21	0	33636..35210	+	524	77461989	-	RSP_1451	-	ABC peptide/nickel/opine transporter, periplasmic substrate-binding protein
25	 65.85	0	35289..36269	+	326	77461990	-	RSP_1452	-	ABC peptide/nickel/opine transporter, inner membrane subunit
26	 66.78	0	36269..37180	+	303	77461991	-	RSP_1453	-	ABC peptide/nickel/opine transporter, inner membrane subunit
27	 69.74	0	37182..39035	+	617	77461992	-	RSP_1454	-	ABC peptide/nickel/opine transporter, fused ATPase subunits
28	 70.04	0	39028..40302	+	424	77461993	-	RSP_1455	-	allantoate amidohydrolase
29	 71.85	0	40299..41243	+	314	77461994	-	RSP_1456	-	hypothetical protein
30	 65.50	0	41240..42184	+	314	77461995	-	RSP_1457	-	putative choline kinase
31	 74.70	+1	43365..44969	-	534	77461996	-	RSP_1458	-	putative DNA repair enzyme
32	 72.16	0	45194..45466	-	90	77461997	-	RSP_6001	-	hypothetical protein
33	 67.74	0	45667..46413	+	248	77461998	-	RSP_1459	-	hypothetical protein
34	 63.41	-1	46555..46800	+	81	77461999	-	RSP_1460	-	hypothetical protein
35	 74.83	+1	46812..47999	+	395	77462000	kdtA	RSP_1461	-	putative 3-deoxy-D-manno-octulosonic-acid transferase
36	 74.57	+1	47999..48997	+	332	77462001	lpxK	RSP_1462	-	lipid-A-disaccharide synthase
37	 70.42	0	49222..50367	-	381	77462002	-	RSP_1463	-	putative acyl-CoA transferase/carnitine dehydratase
38	 64.77	0	50364..51050	-	228	77462003	-	RSP_1464	-	periplasmic thiol-disulphide interchange protein
39	 71.37	0	51047..51577	-	176	77462004	-	RSP_1465	-	hypothetical protein
40	 73.91	+1	51659..52762	+	367	77462005	-	RSP_1466	-	A/G-specific DNA-adenine glycosylase
41	 69.73	0	52800..54071	+	423	77462006	-	RSP_1467	-	alkane 1-monooxygenase
42	 66.04	0	54227..55345	-	372	77462007	-	RSP_1468	-	site-specific DNA-methyltransferase
43	 66.51	0	55434..56072	-	212	77462008	rnhB	RSP_1470	-	ribonuclease HII
44	 76.56	+1	56228..56692	-	154	77462009	-	RSP_1471	-	hypothetical protein
45	 67.91	0	56776..57339	+	187	77462010	-	RSP_6002	-	hypothetical protein
46	 67.23	0	57311..58015	+	234	77462011	-	RSP_1472	-	hypothetical protein
47	 71.77	0	58041..58412	-	123	77462012	-	RSP_1473	-	hypothetical protein
48	 66.30	0	58616..59713	+	365	77462013	nspC	RSP_1474	-	putative carboxynorspermidine decarboxylase protein
49	 65.62	0	59750..60988	+	412	77462014	-	RSP_1475	-	saccharopine dehydrogenase family protein
50	 73.41	+1	61181..63124	-	647	77462015	-	RSP_1476	-	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
51	 67.78	0	63203..63382	-	59	77462016	-	RSP_6210	-	hypothetical protein
52	 69.94	0	63409..65028	-	539	77462017	-	RSP_1478	-	ABC oligopeptide transporter, fused ATPase subunits
53	 67.54	0	65030..66169	-	379	77462018	OppC	RSP_1479	-	ABC oligopeptide transporter, inner membrane subunit OppC
54	 66.88	0	66162..67085	-	307	77462019	OppB	RSP_1480	-	ABC oligopeptide transporter, inner membrane subunit OppB
55	 65.28	0	67142..68731	-	529	77462020	OppA	RSP_1481	-	ABC oligopeptide transporter, perplasmic substrate-binding protein OppA
56	 73.33	+1	69574..69933	+	119	77462021	-	RSP_1483	-	hypothetical protein
57	 77.33	+2	70003..70527	-	174	77462022	-	RSP_1484	-	hypothetical protein
58	 72.69	0	70529..72337	-	602	77462023	-	RSP_1485	-	ATP-dependent RNA helicase
59	 72.77	0	72528..73133	+	201	77462024	-	RSP_1486	-	TetR family transcriptional regulator
60	 63.51	-1	73200..73547	+	115	77462025	-	RSP_1487	-	hypothetical protein
61	 72.18	0	73549..74292	+	247	77462026	-	RSP_1488	-	glyoxalase
62	 68.52	0	74424..75338	+	304	77462027	-	RSP_1489	-	thioredoxin domain-containing protein
63	 66.97	0	75342..76010	+	222	77462028	-	RSP_1490	-	putative ATP-dependent protease La, LON
64	 67.22	0	76007..76186	+	59	77462029	-	RSP_1491	-	hypothetical protein
65	 73.82	+1	76263..77492	-	409	77462030	-	RSP_1492	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase
66	 74.68	+1	77589..78899	+	436	77462031	-	RSP_1493	-	amidase
67	 70.06	0	79022..80200	+	392	77462032	-	RSP_1494	-	aminotransferase
68	 70.14	0	80211..83495	+	1094	77462033	-	RSP_1495	-	DNA translocase FtsK
69	 66.67	0	83627..84265	+	212	77462034	-	RSP_1497	-	putative outer membrane lipoprotein carrier protein
70	 66.84	0	84326..84907	-	193	77462035	-	RSP_1496	-	hypothetical protein
71	 60.66	-1	85139..85504	+	121	77462036	-	RSP_1498	-	hypothetical protein
72	 69.90	0	85545..87122	-	525	77462037	-	RSP_1499	-	gamma-glutamyltransferase 2
73	 72.38	0	87234..87776	-	180	77462038	-	RSP_1500	-	anti-sigma regulatory kinase
74	 67.24	0	87766..88113	-	115	77462039	-	RSP_1501	-	anti-sigma-factor antagonist domain-containing protein
75	 69.09	0	88207..88659	+	150	77462040	-	RSP_1502	-	GAF domain-containing protein
76	 68.44	0	88711..89049	+	112	77462041	-	RSP_1503	-	hypothetical protein
77	 62.84	-1	89065..89325	-	86	77462042	-	RSP_1504	-	hypothetical protein
78	 68.83	0	89409..90056	+	215	77462043	-	RSP_1506	-	ribosomal large subunit pseudouridine synthase A
79	 72.88	0	90032..90787	-	251	77462044	-	RSP_1505	-	putative metallo-phosphoesterase
80	 69.34	0	90784..92244	-	486	77462045	-	RSP_1507	-	aldehyde dehydrogenase
81	 68.88	0	92948..94396	-	482	77462046	-	RSP_1508	-	hypothetical protein
82	 75.96	+1	94407..95708	-	433	77462047	-	RSP_6207	-	hypothetical protein
83	 76.34	+1	95776..96519	-	247	77462048	-	RSP_6208	-	hypothetical protein
84	 74.25	+1	96592..97686	+	364	77462049	-	RSP_1509	-	O-sialoglycoprotein endopeptidase
85	 74.51	+1	97683..98600	+	305	77462050	-	RSP_1510	-	putative glycerol-3-phosphate dehydrogenase (NAD(P)+)
86	 68.86	0	98604..98876	+	90	77462051	-	RSP_1511	-	YciI-like protein
87	 68.12	0	98876..99289	+	137	77462052	-	RSP_1512	-	hypothetical protein
88	 67.83	0	99597..100802	+	401	77462053	trpB	RSP_1513	-	tryptophan synthase subunit beta
89	 64.80	0	100961..102352	-	463	77462054	ahcY	RSP_1514	-	S-adenosyl-L-homocysteine hydrolase
90	 64.16	-1	102475..103431	+	318	77462055	-	RSP_1515	-	hypothetical protein
91	 67.18	0	103428..104012	+	194	77462056	-	RSP_1516	-	putative S-adenosyl L-homocystein hydrolase
92	 62.22	-1	104024..104338	-	104	77462057	spbA	RSP_1517	-	HNS family histone-like protein
93	 68.11	0	104574..105128	-	184	77462058	prrA	RSP_1518	-	PrrA (RegA), response regulator involved in oxygen regulation of photosynthesis genes
94	 62.93	-1	105121..105816	-	231	77462059	prrC	RSP_1519	-	PrrC
95	 68.11	0	105908..107296	+	462	77462060	prrB	RSP_1520	-	sensor histidine kinase PrrB (RegB)
96	 71.47	0	107423..108985	+	520	77462061	-	RSP_1521	-	hypothetical protein
97	 74.28	+1	109269..109754	+	161	77462062	-	RSP_1522	-	hypothetical protein
98	 76.02	+1	109747..110772	+	341	77462063	-	RSP_1523	-	hypothetical protein
99	 71.32	0	110754..111419	+	221	77462064	-	RSP_1524	-	nucleotidyltransferase family protein
100	 74.82	+1	111412..114405	+	997	77462065	-	RSP_1525	-	putative helicase/exonuclease
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.