IslandPath Analysis: Shewanella sp. MR-7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.37   STD DEV: 3.75
Shewanella sp. MR-7, complete genome - 1..4792610
4006 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 45.99	0	81..1463	+	460	114045514	dnaA	Shewmr7_0001	-	chromosomal replication initiation protein
2	 46.23	0	1484..2584	+	366	114045515	-	Shewmr7_0002	-	DNA polymerase III, beta subunit
3	 45.71	0	2747..3829	+	360	114045516	-	Shewmr7_0003	-	DNA replication and repair protein RecF
4	 48.43	0	3846..6263	+	805	114045517	-	Shewmr7_0004	-	DNA gyrase subunit B
5	 47.18	0	6345..7001	-	218	114045518	-	Shewmr7_0005	-	glutathione S-transferase domain-containing protein
6	 48.06	0	7128..7976	+	282	114045519	-	Shewmr7_0006	-	LysR family transcriptional regulator
7	 46.74	0	8132..9175	+	347	114045520	-	Shewmr7_0007	-	putative signal transduction protein
8	 48.91	0	9239..11305	-	688	114045521	glyS	Shewmr7_0008	-	glycyl-tRNA synthetase subunit beta
9	 49.34	0	11315..12220	-	301	114045522	glyQ	Shewmr7_0009	-	glycyl-tRNA synthetase subunit alpha
10	 44.97	0	12339..12914	+	191	114045523	-	Shewmr7_0010	-	DNA-3-methyladenine glycosylase I
11	 47.51	0	13000..16188	-	1062	114045524	-	Shewmr7_0011	-	amidohydrolase
12	 53.20	+1	16385..16822	-	145	114045525	-	Shewmr7_0012	-	hypothetical protein
13	 44.72	0	16858..17103	-	81	114045526	-	Shewmr7_0013	-	SirA family protein
14	 44.47	-1	17262..18455	-	397	114045527	-	Shewmr7_0014	-	diguanylate cyclase
15	 51.46	0	18689..19852	-	387	114045528	fadA	Shewmr7_0015	-	3-ketoacyl-CoA thiolase
16	 49.84	0	19875..22025	-	716	114045529	fadB	Shewmr7_0016	-	multifunctional fatty acid oxidation complex subunit alpha
17	 49.02	0	22469..23788	+	439	114045530	-	Shewmr7_0017	-	proline dipeptidase
18	 48.94	0	23804..24418	+	204	114045531	-	Shewmr7_0018	-	hypothetical protein
19	 50.82	0	24496..25953	+	485	114045532	-	Shewmr7_0019	-	TrkH family potassium uptake protein
20	 47.05	0	25955..26479	+	174	114045533	-	Shewmr7_0020	-	protoporphyrinogen oxidase
21	 44.98	0	26542..26850	-	102	114045534	-	Shewmr7_0021	-	ArsR family transcriptional regulator
22	 49.73	0	27049..27603	+	184	114045535	-	Shewmr7_0022	-	protoporphyrinogen oxidase
23	 50.94	0	27650..29092	-	480	114045536	-	Shewmr7_0023	-	TrkH family potassium uptake protein
24	 51.77	0	29104..30513	-	469	114045537	trkA	Shewmr7_0024	-	potassium transporter peripheral membrane component
25	 52.09	0	30529..31818	-	429	114045538	-	Shewmr7_0025	-	sun protein
26	 51.93	0	31818..32774	-	318	114045539	-	Shewmr7_0026	-	methionyl-tRNA formyltransferase
27	 44.97	0	32790..33296	-	168	114045540	-	Shewmr7_0027	-	peptide deformylase
28	 47.91	0	33422..34546	+	374	114045541	-	Shewmr7_0028	-	peptidoglycan-binding LysM
29	 49.16	0	34630..35646	+	338	114045542	-	Shewmr7_0029	-	DNA protecting protein DprA
30	 43.61	-1	35649..36125	+	158	114045543	-	Shewmr7_0030	-	hypothetical protein
31	 46.99	0	36248..36811	+	187	114045544	-	Shewmr7_0031	-	DNA topoisomerase type IA Zn finger domain-containing protein
32	 49.38	0	36950..37516	+	188	114045545	-	Shewmr7_0032	-	translation factor SUA5
33	 49.50	0	37546..38454	+	302	114045546	-	Shewmr7_0033	-	coproporphyrinogen III oxidase
34	 45.66	0	38496..38933	-	145	114045547	-	Shewmr7_0034	-	globin
35	 52.45	+1	39105..39983	+	292	114045548	-	Shewmr7_0035	-	shikimate 5-dehydrogenase
36	 46.01	0	40004..40279	+	91	114045549	-	Shewmr7_0036	-	hypothetical protein
37	 50.64	0	40336..40884	-	182	114045550	-	Shewmr7_0037	-	carbonic anhydrase
38	 47.06	0	46906..47160	+	84	114045551	-	Shewmr7_0038	-	hypothetical protein
39	 48.03	0	47182..47637	+	151	114045552	-	Shewmr7_0039	-	BadM/Rrf2 family transcriptional regulator
40	 49.74	0	47612..48367	-	251	114045553	-	Shewmr7_0040	-	protein of unknown function DUF610, YibQ
41	 48.76	0	48380..49585	-	401	114045554	-	Shewmr7_0041	-	C-terminal processing peptidase-3
42	 49.03	0	49634..50767	-	377	114045555	-	Shewmr7_0042	-	peptidase M23B
43	 51.26	0	50778..52322	-	514	114045556	-	Shewmr7_0043	-	phosphoglyceromutase
44	 40.92	-1	52588..53022	+	144	114045557	-	Shewmr7_0044	-	rhodanese domain-containing protein
45	 47.12	0	53284..53769	+	161	114045558	-	Shewmr7_0045	-	preprotein translocase subunit SecB
46	 52.41	+1	53774..54790	+	338	114045559	gpsA	Shewmr7_0046	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
47	 51.39	0	55029..56213	+	394	114045560	-	Shewmr7_0047	-	hypothetical protein
48	 42.50	-1	56438..59131	-	897	114045561	-	Shewmr7_0048	-	tetratricopeptide domain-containing protein
49	 51.17	0	59421..60782	-	453	114045562	-	Shewmr7_0049	-	TrkH family potassium uptake protein
50	 53.08	+1	60784..61482	-	232	114045563	-	Shewmr7_0050	-	TrkA domain-containing protein
51	 52.90	+1	61527..62216	-	229	114045564	-	Shewmr7_0051	-	two component transcriptional regulator
52	 52.24	+1	62217..63263	-	348	114045565	-	Shewmr7_0052	-	periplasmic sensor signal transduction histidine kinase
53	 55.74	+1	63491..64414	-	307	114045566	-	Shewmr7_0053	-	pirin domain-containing protein
54	 48.81	0	64899..66572	+	557	114045567	-	Shewmr7_0054	-	signal transduction histidine kinase, LytS
55	 47.40	0	66566..67297	+	243	114045568	-	Shewmr7_0055	-	response regulator receiver protein
56	 49.32	0	67405..68649	+	414	114045569	-	Shewmr7_0056	-	major facilitator transporter
57	 36.71	-2	68739..69359	-	206	114045570	-	Shewmr7_0057	-	hypothetical protein
58	 50.68	0	69785..70522	+	245	114045571	-	Shewmr7_0058	-	hypothetical protein
59	 50.21	0	70622..71101	+	159	114045572	-	Shewmr7_0059	-	NLP/P60 protein
60	 54.59	+1	71126..72574	+	482	114045573	-	Shewmr7_0060	-	major facilitator transporter
61	 47.42	0	72663..73691	+	342	114045574	-	Shewmr7_0061	-	LacI family transcription regulator
62	 47.61	0	73751..75235	-	494	114045575	-	Shewmr7_0062	-	sucrose phosphorylase
63	 46.36	0	75492..76712	+	406	114045576	-	Shewmr7_0063	-	major facilitator transporter
64	 48.23	0	76972..79368	+	798	114045577	-	Shewmr7_0064	-	TonB-dependent receptor
65	 49.38	0	79461..80420	+	319	114045578	-	Shewmr7_0065	-	ribokinase-like domain-containing protein
66	 53.56	+1	80626..81159	+	177	114045579	mogA	Shewmr7_0066	-	molybdenum cofactor biosynthesis protein
67	 53.15	+1	81193..81414	-	73	114045580	-	Shewmr7_0067	-	hypothetical protein
68	 49.33	0	81566..82609	+	347	114045581	-	Shewmr7_0068	-	transcriptional regulator
69	 48.28	0	82613..82873	-	86	114045582	-	Shewmr7_0069	-	hypothetical protein
70	 51.84	0	82923..84062	-	379	114045583	-	Shewmr7_0070	-	transport protein, putative
71	 55.37	+1	84151..84885	-	244	114045584	-	Shewmr7_0071	-	ABC transporter related
72	 53.67	+1	84888..86495	-	535	114045585	-	Shewmr7_0072	-	TAP domain-containing protein
73	 54.37	+1	86588..86953	+	121	114045586	-	Shewmr7_0073	-	GntR family transcriptional regulator
74	 53.70	+1	87000..87863	+	287	114045587	-	Shewmr7_0074	-	ABC transporter related
75	 52.40	+1	87860..89170	+	436	114045588	-	Shewmr7_0075	-	hypothetical protein
76	 50.95	0	89299..91092	+	597	114045589	-	Shewmr7_0076	-	AMP-dependent synthetase and ligase
77	 48.96	0	91233..93722	+	829	114045590	-	Shewmr7_0077	-	MORN repeat-containing protein
78	 50.61	0	93830..94240	+	136	114045591	-	Shewmr7_0078	-	thioesterase superfamily protein
79	 50.82	0	94358..94906	+	182	114045592	-	Shewmr7_0079	-	HPP family protein
80	 49.24	0	94927..95190	-	87	114045593	-	Shewmr7_0080	-	hypothetical protein
81	 46.24	0	95250..95714	-	154	114045594	-	Shewmr7_0081	-	thioesterase superfamily protein
82	 48.87	0	95862..96215	+	117	114045595	-	Shewmr7_0082	-	MerR family transcriptional regulator
83	 49.57	0	96287..96865	+	192	114045596	-	Shewmr7_0083	-	NAD(P)H dehydrogenase (quinone)
84	 50.25	0	96881..97276	+	131	114045597	-	Shewmr7_0084	-	glutathione-dependent formaldehyde-activating, GFA
85	 49.05	0	97339..98019	-	226	114045598	-	Shewmr7_0085	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
86	 48.97	0	98383..98817	+	144	114045599	-	Shewmr7_0086	-	hypothetical protein
87	 44.58	-1	98910..99923	+	337	114045600	-	Shewmr7_0087	-	hypothetical protein
88	 50.41	0	100052..100783	+	243	114045601	-	Shewmr7_0088	-	hypothetical protein
89	 51.62	0	100874..102781	-	635	114045602	-	Shewmr7_0089	-	hypothetical protein
90	 51.28	0	103052..103480	+	142	114045603	-	Shewmr7_0090	-	MarR family transcriptional regulator
91	 50.33	0	103515..104267	+	250	114045604	-	Shewmr7_0091	-	FAD-binding 9, siderophore-interacting domain-containing protein
92	 51.92	0	104334..105560	-	408	114045605	-	Shewmr7_0092	-	imidazolonepropionase
93	 54.52	+1	105758..106465	+	235	114045606	-	Shewmr7_0093	-	histidine utilization repressor
94	 55.00	+1	106589..108259	+	556	114045607	-	Shewmr7_0094	-	urocanate hydratase
95	 53.83	+1	108309..109850	+	513	114045608	-	Shewmr7_0095	-	histidine ammonia-lyase
96	 50.00	0	110459..111040	+	193	114045609	-	Shewmr7_0096	-	twin-arginine translocation pathway signal
97	 50.31	0	111089..113473	+	794	114045610	-	Shewmr7_0097	-	formate dehydrogenase alpha subunit
98	 53.01	+1	113476..114390	+	304	114045611	-	Shewmr7_0098	-	formate dehydrogenase beta subunit
99	 49.69	0	114387..115028	+	213	114045612	-	Shewmr7_0099	-	formate dehydrogenase gamma subunit
100	 56.22	+2	115028..115936	+	302	114045613	-	Shewmr7_0100	-	formate dehydrogenase accessory protein FdhE
48.37	MEAN

3.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.