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IslandPath Analysis: Chlamydia trachomatis A/HAR-13

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.51 STD DEV: 2.37

Chlamydia trachomatis A/HAR-13, complete genome - 1..1044459
911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 46.61	+2	1..1770	+	589	76788712	-	CTA_0001	-	hypothetical protein
2	 41.76	0	1915..2187	-	90	76788713	-	CTA_0002	-	hypothetical protein
3	 39.27	0	2388..2690	+	100	76788714	gatC	CTA_0003	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
4	 43.29	0	2702..4177	+	491	76788715	gatA	CTA_0004	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
5	 43.08	0	4179..5645	+	488	76788716	gatB	CTA_0005	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
6	 46.43	+2	5744..6835	-	363	76788717	-	CTA_0006	-	hypothetical protein
7	 45.09	+1	6963..7532	-	189	76788718	-	CTA_0007	-	hypothetical protein
8	 40.38	0	7846..8796	+	316	76788719	-	CTA_0008	-	hypothetical protein
9	 42.19	0	8812..9714	-	300	76788720	rnhC	CTA_0009	-	ribonuclease HIII
10	 40.28	0	9968..10399	+	143	76788721	yfgA	CTA_0010	-	sigma-54 interaction/ATP-binding protein
11	 41.37	0	10386..11753	-	455	76788722	htrB	CTA_0011	-	lipid A biosynthesis lauroyl acyltransferase
12	 37.55	-1	11884..13140	-	418	76788723	-	CTA_0012	-	hypothetical protein
13	 42.28	0	13318..13932	-	204	76788724	ybbP	CTA_0013	-	hypothetical protein
14	 40.49	0	14207..15547	+	446	76788725	cydA	CTA_0014	-	cytochrome d ubiquinol oxidase subunit I
15	 40.21	0	15559..16620	+	353	76788726	cydB	CTA_0015	-	cytochrome d ubiquinol oxidase subunit II
16	 40.31	0	16718..18022	-	434	76788727	phoH	CTA_0016	-	hypothetical protein
17	 40.33	0	18231..18959	+	242	76788728	-	CTA_0017	-	hypothetical protein
18	 40.86	0	19145..20446	+	433	76788729	-	CTA_0018	-	hypothetical protein
19	 44.30	+1	20508..20981	-	157	76788730	-	CTA_0019	-	hypothetical protein
20	 41.95	0	22027..25137	+	1036	76788731	ileS	CTA_0021	-	isoleucyl-tRNA synthetase
21	 40.17	0	25198..27084	-	628	76788732	lepB	CTA_0022	-	signal peptidase I
22	 39.65	0	27270..28013	-	247	76788733	-	CTA_0023	-	hypothetical protein
23	 41.90	0	28089..28415	+	108	76788734	rpmE2	CTA_0024	-	50S ribosomal protein L31 type B
24	 45.09	+1	28603..29682	+	359	76788735	prfA	CTA_0025	-	peptide chain release factor 1
25	 43.18	0	29666..30538	+	290	76788736	-	CTA_0026	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
26	 43.36	0	30535..31881	+	448	76788737	ffh	CTA_0027	-	signal recognition particle, subunit FFH/SRP54
27	 42.45	0	31872..32222	+	116	76788738	rpsP	CTA_0028	-	30S ribosomal protein S16
28	 44.38	+1	32238..33296	+	352	76788739	trmD	CTA_0029	-	fused tRNA (guanine-N(1)-)-methyltransferase/uncharacterized domain-containing protein
29	 45.90	+1	33322..33687	+	121	76788740	rplS	CTA_0030	-	50S ribosomal protein L19
30	 43.88	+1	33750..34403	+	217	76788741	rnhB	CTA_0031	-	ribonuclease HII
31	 42.07	0	34394..35011	+	205	76788742	gmk	CTA_0032	-	guanylate kinase
32	 40.59	0	35004..35306	+	100	76788743	-	CTA_0033	-	hypothetical protein
33	 41.32	0	35306..36958	+	550	76788744	metG	CTA_0034	-	methionyl-tRNA synthetase
34	 40.29	0	37098..39338	-	746	76788745	recD_1	CTA_0035	-	exodeoxyribonuclease V alpha chain
35	 42.69	0	39586..40611	-	341	76788746	ytfF	CTA_0036	-	drug/metabolite exporter family protein
36	 44.96	+1	40950..41723	+	257	76788747	-	CTA_0037	-	biotin--protein ligase
37	 41.17	0	41688..42899	-	403	76788748	-	CTA_0038	-	hypothetical protein
38	 38.94	-1	42906..43262	-	118	76788749	-	CTA_0039	-	hypothetical protein
39	 39.03	-1	43461..43811	-	116	76788750	-	CTA_0041	-	hypothetical protein
40	 41.36	0	43827..44399	-	190	76788751	dcd	CTA_0042	-	deoxycytidine triphosphate deaminase
41	 35.95	-2	44487..44639	+	50	76788752	-	CTA_0043	-	hypothetical protein
42	 43.08	0	44681..45685	+	334	76788753	ruvB	CTA_0044	-	Holliday junction DNA helicase B
43	 42.39	0	45639..46499	+	286	76788754	-	CTA_0045	-	hypothetical protein
44	 42.13	0	46561..48561	-	666	76788755	glgX	CTA_0046	-	isoamylase
45	 45.83	+1	48679..49182	-	167	76788756	-	CTA_0047	-	hypothetical protein
46	 40.30	0	49647..50120	+	157	76788757	ssb	CTA_0048	-	single-strand DNA-binding protein
47	 42.33	0	50461..51960	+	499	76788758	pepA	CTA_0049	-	leucyl aminopeptidase
48	 41.83	0	52097..52708	+	203	76788759	hctB	CTA_0050	-	histone-like protein 2
49	 39.15	0	52863..53807	+	314	76788760	-	CTA_0051	-	hypothetical protein
50	 42.72	0	53902..54615	+	237	76788761	yraL	CTA_0052	-	tetrapyrrole (corrin/porphyrin) methylase family protein
51	 44.60	+1	54706..56178	+	490	76788762	-	CTA_0053	-	hypothetical protein
52	 42.88	0	56237..57985	-	582	76788763	-	CTA_0054	-	hypothetical protein
53	 42.03	0	58089..59651	-	520	76788764	-	CTA_0055	-	hypothetical protein
54	 41.25	0	59705..60841	-	378	76788765	hemN_1	CTA_0056	-	coproporphyrinogen III oxidase
55	 44.74	+1	60831..61277	-	148	76788766	-	CTA_0057	-	hypothetical protein
56	 42.11	0	61609..64320	+	903	76788767	kgd	CTA_0058	-	alpha-ketoglutarate decarboxylase
57	 42.17	0	64324..65421	+	365	76788768	sucB_1	CTA_0059	-	dihydrolipoamide acetyltransferase
58	 43.87	0	65450..66208	-	252	76788769	-	CTA_0060	-	hypothetical protein
59	 42.95	0	66190..67998	-	602	76788770	gcpE	CTA_0061	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
60	 44.47	+1	68149..69252	-	367	76788771	-	CTA_0062	-	hypothetical protein
61	 45.29	+1	69332..69607	-	91	76788772	fer	CTA_0063	-	ferredoxin
62	 41.31	0	69789..71606	+	605	76788773	flhA	CTA_0065	-	type III secretion system protein
63	 41.60	0	71714..72475	+	253	76788774	fliA	CTA_0066	-	RNA polymerase sigma factor sigma-28
64	 41.32	0	72634..73872	+	412	76788775	tyrS	CTA_0067	-	tyrosyl-tRNA synthetase
65	 43.17	0	73882..75324	+	480	76788776	gnd	CTA_0068	-	6-phosphogluconate dehydrogenase
66	 40.57	0	75385..77193	-	602	76788777	lepA	CTA_0069	-	GTP-binding protein LepA
67	 43.07	0	77379..78959	-	526	76788778	-	CTA_0070	-	ADP,ATP carrier protein
68	 40.67	0	79310..79786	-	158	76788779	-	CTA_0071	-	hypothetical protein
69	 41.18	0	80445..81425	+	326	76788780	ytgA	CTA_0072	-	manganese-binding protein
70	 41.17	0	81343..82197	+	284	76788781	ytgB	CTA_0073	-	hypothetical protein
71	 38.64	-1	82198..83553	+	451	76788782	ytgC	CTA_0074	-	MntB
72	 37.30	-1	83543..84499	+	318	76788783	ytgD	CTA_0075	-	ABC transporter ATP-binding protein
73	 41.58	0	84526..85665	+	379	76788784	dxr	CTA_0076	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
74	 42.85	0	85861..87720	+	619	76788785	yaeL	CTA_0077	-	M50 family membrane endopeptidase
75	 39.88	0	87667..88644	-	325	76788786	-	CTA_0078	-	esterase
76	 40.16	0	88802..89899	-	365	76788787	recF	CTA_0079	-	recombination protein F
77	 40.53	0	89899..91149	-	416	76788788	dnaN	CTA_0080	-	DNA polymerase III subunit beta
78	 41.89	0	91279..91734	+	151	76788789	smpB	CTA_0081	-	SsrA-binding protein
79	 44.27	+1	91712..92662	-	316	76788790	apbE	CTA_0082	-	thiamine biosynthesis lipoprotein ApbE precursor
80	 43.75	0	92632..93495	-	287	76788791	folD	CTA_0083	-	methenyltetrahydrofolate cyclohydrolase
81	 44.59	+1	93613..94056	-	147	76788792	-	CTA_0084	-	hypothetical protein
82	 39.46	0	94333..94626	+	97	76788793	ltuB	CTA_0085	-	late transcription unit B protein
83	 37.04	-1	94683..94979	+	98	76788794	-	CTA_0086	-	hypothetical protein
84	 43.37	0	94989..96671	+	560	76788795	-	CTA_0087	-	hypothetical protein
85	 41.20	0	96668..97150	+	160	76788796	-	CTA_0088	-	hypothetical protein
86	 38.49	-1	97164..98249	-	361	76788797	-	CTA_0089	-	phosphatidylcholine-hydrolyzing phospholipase D (PLD) family protein
87	 42.87	0	98419..100158	-	579	76788798	-	CTA_0090	-	putative quinone decarboxylase
88	 40.00	0	100284..100553	-	89	76788799	rpmB	CTA_0091	-	50S ribosomal protein L28
89	 41.67	0	100702..102285	-	527	76788800	malQ	CTA_0092	-	4-alpha-glucanotransferase
90	 37.87	-1	102289..102729	-	146	76788801	sycE	CTA_0093	-	secretion chaperone
91	 43.36	0	102767..104032	-	421	76788802	lcrE	CTA_0094	-	low calcium response protein E
92	 42.45	0	104050..106176	-	708	76788803	lcrD	CTA_0095	-	low calcium response protein D
93	 39.24	0	106176..107258	-	360	76788804	sctU	CTA_0096	-	type III secretion system protein
94	 41.51	0	107515..108615	+	366	76788805	ychF	CTA_0097	-	translation-associated GTPase
95	 41.83	0	108624..109529	-	301	76788806	ribF	CTA_0098	-	bifunctional riboflavin kinase/FMN adenylyltransferase
96	 43.02	0	109486..109743	-	85	76788807	truB_1	CTA_0099	-	tRNA pseudouridine synthase B
97	 40.77	0	109796..110212	-	138	76788808	truB_2	CTA_0100	-	tRNA pseudouridine synthase B
98	 37.63	-1	110250..110621	-	123	76788809	rbfA	CTA_0101	-	ribosome-binding factor A
99	 42.74	0	110628..113306	-	892	76788810	infB	CTA_0102	-	translation initiation factor IF-2
100	 40.38	0	113263..114567	-	434	76788811	nusA	CTA_0103	-	transcription elongation factor NusA
41.51	MEAN

2.37	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.