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Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 51.52 0 190..255 + 21 74310615 thrL SSON_0001 - thr operon leader peptide 2 53.27 0 337..2799 + 820 74310616 thrA SSON_0002 - bifunctional aspartokinase I/homeserine dehydrogenase I 3 56.38 +1 2801..3733 + 310 74310617 thrB SSON_0003 - homoserine kinase 4 53.30 0 3734..5020 + 428 74310618 thrC SSON_0004 - threonine synthase 5 54.21 0 5234..5530 + 98 74310619 - SSON_0005 - hypothetical protein 6 49.03 0 5683..6459 - 258 74310620 yaaA SSON_0006 - hypothetical protein 7 54.17 0 7446..7949 + 167 74310621 - SSON_0007 - IS1 ORF 8 51.36 0 9014..9967 + 317 74310622 talB SSON_0009 - transaldolase B 9 53.74 0 10082..10669 + 195 74310623 mogA SSON_0010 - molybdenum cofactor biosynthesis protein 10 52.38 0 10704..11270 - 188 74310624 yaaH SSON_0011 - hypothetical protein 11 50.28 0 11419..12132 - 237 74310625 - SSON_0012 - hypothetical protein 12 48.15 0 12158..12562 - 134 74310626 yaaI SSON_0013 - hypothetical protein 13 51.12 0 12939..14855 + 638 74310627 dnaK SSON_0014 - molecular chaperone DnaK 14 54.91 0 14944..16074 + 376 74310628 dnaJ SSON_0015 - chaperone protein DnaJ 15 51.43 0 16178..16387 - 69 74310629 gef SSON_0016 - Gef protein interferes with membrane function when in excess 16 50.36 0 17028..17855 - 275 74310630 - SSON_0017 - putative transposase 17 53.03 0 17921..19093 + 390 74310631 - SSON_0018 - IS21 ORF1 18 52.63 0 19093..19890 + 265 74310632 - SSON_0019 - IS21 ORF2 19 47.18 -1 19900..20289 - 129 74310633 - SSON_0020 - hypothetical protein 20 51.59 0 20572..21738 + 388 74310634 nhaA SSON_0021 - pH-dependent sodium/proton antiporter 21 47.57 0 21798..22703 + 301 74310635 nhaR SSON_0022 - transcriptional activator NhaR 22 36.99 -2 22741..23424 - 227 74310636 - SSON_0023 - hypothetical protein 23 40.30 -2 23714..24517 - 267 74310637 - SSON_0024 - hypothetical protein 24 54.37 0 24753..25256 + 167 74310638 - SSON_0025 - IS1 ORF 25 38.48 -2 25267..25635 - 122 74310639 - SSON_0026 - hypothetical protein 26 32.35 -2 26076..27197 - 373 74310640 - SSON_0027 - hypothetical protein 27 46.59 -1 27981..28244 - 87 74310641 rpsT SSON_0028 - 30S ribosomal protein S20 28 48.86 0 28347..28565 + 72 74310642 - SSON_0029 - hypothetical protein 29 53.18 0 28573..29514 + 313 74310643 ribF SSON_0030 - bifunctional riboflavin kinase/FMN adenylyltransferase 30 55.56 0 29557..32373 + 938 74310644 ileS SSON_0031 - isoleucyl-tRNA synthetase 31 53.54 0 32373..32867 + 164 74310645 lspA SSON_0032 - lipoprotein signal peptidase 32 54.00 0 32992..33441 + 149 74310646 slpA SSON_0033 - FKBX-type 16KD peptidyl-prolyl cis-trans isomerase 33 55.10 0 33443..34393 + 316 74310647 ispH SSON_0034 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 34 55.41 0 34459..35373 + 304 74310648 yaaF SSON_0035 - ribonucleoside hydrolase RihC 35 53.53 0 35540..36361 + 273 74310649 dapB SSON_0036 - dihydrodipicolinate reductase 36 53.26 0 36817..37965 + 382 74310650 carA SSON_0037 - carbamoyl phosphate synthase small subunit 37 56.24 +1 37983..41204 + 1073 74310651 carB SSON_0038 - carbamoyl phosphate synthase large subunit 38 54.37 0 41371..41874 - 167 74310652 - SSON_0039 - IS1 ORF 39 46.97 -1 42242..42637 + 131 161986601 caiF SSON_0040 - DNA-binding transcriptional activator CaiF 40 54.90 0 42846..43457 - 203 74310654 caiE SSON_0041 - carnitine operon protein CaiE 41 52.68 0 43442..44335 - 297 74310655 caiD SSON_0042 - carnitinyl-CoA dehydratase 42 51.18 0 44336..45904 - 522 74310656 caiC SSON_0043 - putative crotonobetaine/carnitine-CoA ligase 43 46.20 -1 46053..46355 + 100 74310657 - SSON_0044 - IS600 ORF1 44 51.96 0 46496..47209 + 237 74310658 - SSON_0045 - IS600 ORF2 45 53.89 0 48576..49718 - 380 74310659 caiA SSON_0047 - crotonobetainyl-CoA dehydrogenase 46 51.62 0 49749..51263 - 504 74310660 caiT SSON_0048 - L-carnitine/gamma-butyrobetaine antiporter 47 52.27 0 51737..52507 + 256 161986600 fixA SSON_0049 - putative electron transfer flavoprotein FixA 48 56.05 +1 52522..53463 + 313 74310662 fixB SSON_0050 - putative electron transfer flavoprotein FixB 49 55.17 0 53514..54800 + 428 74310663 fixC SSON_0051 - putative oxidoreductase FixC 50 56.94 +1 54797..55084 + 95 74310664 fixX SSON_0052 - putative ferredoxin 51 54.05 0 56582..57112 + 176 74310665 yabF SSON_0054 - glutathione-regulated potassium-efflux system ancillary protein KefF 52 55.50 0 57105..58967 + 620 74310666 kefC SSON_0055 - glutathione-regulated potassium-efflux system protein KefC 53 53.12 0 59159..59638 + 159 74310667 folA SSON_0056 - dihydrofolate reductase 54 55.52 0 59716..60558 - 280 74310668 apaH SSON_0057 - diadenosine tetraphosphatase 55 51.85 0 60565..60942 - 125 74310669 apaG SSON_0058 - ApaG 56 53.16 0 60945..61766 - 273 74310670 ksgA SSON_0059 - dimethyladenosine transferase 57 56.36 +1 61763..62752 - 329 74310671 pdxA SSON_0060 - 4-hydroxythreonine-4-phosphate dehydrogenase 58 54.08 0 62752..64038 - 428 74310672 surA SSON_0061 - peptidyl-prolyl cis-trans isomerase SurA 59 51.51 0 64091..66445 - 784 74310673 imp SSON_0062 - organic solvent tolerance protein 60 52.82 0 66700..67515 + 271 74310674 djlA SSON_0063 - DNA-J like membrane chaperone protein 61 54.39 0 67632..68291 - 219 74310675 yabO SSON_0064 - 23S rRNA/tRNA pseudouridine synthase A 62 55.01 0 68303..71209 - 968 74310676 hepA SSON_0065 - ATP-dependent helicase HepA 63 54.85 0 71373..73724 - 783 74310677 polB SSON_0066 - DNA polymerase II 64 55.17 0 73799..74494 - 231 74310678 araD SSON_0067 - L-ribulose-5-phosphate 4-epimerase 65 55.29 0 74663..76165 - 500 74310679 araA SSON_0068 - L-arabinose isomerase 66 58.02 +1 76176..77876 - 566 74310680 araB SSON_0069 - ribulokinase 67 52.79 0 78215..79093 + 292 74310681 araC SSON_0070 - DNA-binding transcriptional regulator AraC 68 54.77 0 79179..79943 + 254 74310682 yabI SSON_0071 - hypothetical protein 69 57.37 +1 80013..80711 - 232 74310683 thiQ SSON_0072 - thiamine transporter ATP-binding subunit 70 57.91 +1 80695..82305 - 536 74310684 thiP SSON_0073 - thiamine transporter membrane protein 71 52.95 0 82281..83264 - 327 74310685 tbpA SSON_0074 - thiamine transporter substrate binding subunit 72 55.50 0 83428..85083 - 551 74310686 yabN SSON_0075 - transcriptional regulator SgrR 73 49.19 0 85405..86520 + 371 74310687 yabM SSON_0076 - putative transport protein 74 54.37 0 86769..87272 + 167 74310688 - SSON_0077 - IS1 ORF 75 51.98 0 87408..88013 - 201 74310689 leuD SSON_0078 - isopropylmalate isomerase small subunit 76 55.32 0 88024..89424 - 466 74310690 leuC SSON_0079 - isopropylmalate isomerase large subunit 77 55.31 0 89427..90518 - 363 161986599 leuB SSON_0080 - 3-isopropylmalate dehydrogenase 78 52.93 0 90518..92089 - 523 74310692 leuA SSON_0081 - 2-isopropylmalate synthase 79 47.13 -1 92182..92268 - 28 74310693 leuL SSON_0082 - leu operon leader peptide 80 45.93 -1 92928..93872 + 314 161986598 leuO SSON_0083 - leucine transcriptional activator 81 52.75 0 94190..95914 + 574 74310695 ilvI SSON_0084 - acetolactate synthase 3 catalytic subunit 82 49.59 0 95917..96408 + 163 74310696 ilvH SSON_0085 - acetolactate synthase 3 regulatory subunit 83 45.98 -1 96420..96506 + 28 74310697 fruL SSON_0086 - fruR leader peptide 84 54.73 0 96588..97592 + 334 74310698 fruR SSON_0087 - DNA-binding transcriptional regulator FruR 85 54.37 0 97888..98391 + 167 74310699 - SSON_0088 - IS1 ORF 86 52.29 0 98971..99429 + 152 74310700 yabB SSON_0089 - cell division protein MraZ 87 55.20 0 99431..100372 + 313 74310701 mraW SSON_0090 - S-adenosyl-methyltransferase MraW 88 50.27 0 100369..100734 + 121 74310702 ftsL SSON_0091 - cell division protein FtsL 89 54.05 0 100750..102516 + 588 74310703 ftsI SSON_0092 - septum formation; penicillin-binding protein 3; peptidoglycan synthetase 90 56.56 +1 102503..103996 + 497 74310704 murE SSON_0093 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 91 55.11 0 103993..105351 + 452 74310705 murF SSON_0094 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 92 53.46 0 105345..106427 + 360 74310706 mraY SSON_0095 - phospho-N-acetylmuramoyl-pentapeptide-transferase 93 55.28 0 106430..107746 + 438 74310707 murD SSON_0096 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 94 53.09 0 107746..108990 + 414 74310708 ftsW SSON_0097 - cell division protein FtsW 95 56.18 +1 108987..110054 + 355 74310709 murG SSON_0098 - N-acetylglucosaminyl transferase 96 54.47 0 110108..111583 + 491 74310710 murC SSON_0099 - UDP-N-acetylmuramate--L-alanine ligase 97 51.57 0 111576..112496 + 306 74310711 ddl SSON_0100 - D-alanine--D-alanine ligase 98 53.43 0 112498..113328 + 276 74310712 ftsQ SSON_0101 - cell division protein FtsQ 99 52.10 0 113325..114587 + 420 74310713 ftsA SSON_0102 - cell division protein FtsA 100 53.99 0 114648..115799 + 383 74310714 ftsZ SSON_0103 - cell division protein FtsZ 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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