version 1.0
Shigella boydii CDC 3083-94, complete genome - 1..4615997 4246 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 51.52 0 190..255 + 21 187731657 thrL SbBS512_E0001 - thr operon leader peptide 2 52.86 0 336..2798 + 820 187733611 thrA SbBS512_E0002 - aspartokinase/homoserine dehydrogenase I 3 55.63 0 2800..3732 + 310 187733021 thrB SbBS512_E0003 - homoserine kinase 4 53.30 0 3733..5019 + 428 187732437 thrC SbBS512_E0004 - threonine synthase 5 49.68 0 5682..6458 - 258 187731324 - SbBS512_E0006 - hypothetical protein 6 53.32 0 6528..7958 - 476 187730478 agcS SbBS512_E0007 - amino acid carrier protein 7 51.15 0 8237..9190 + 317 187730143 tal2 SbBS512_E0008 - transaldolase 8 53.74 0 9305..9892 + 195 187733564 mog SbBS512_E0009 - molybdopterin biosynthesis protein Mog 9 52.03 0 9927..10493 - 188 187732969 - SbBS512_E0010 - membrane protein, GPR1/FUN34/yaaH family 10 50.70 0 10642..11355 - 237 187732486 - SbBS512_E0011 - hypothetical protein 11 42.22 -2 11381..11560 - 59 187731912 - SbBS512_E0012 - hypothetical protein 12 55.19 0 11545..12450 - 301 187732886 - SbBS512_E0013 - IS2 transposase orfB 13 53.17 0 12916..13419 - 167 187732290 - SbBS512_E0014 - IS1 transposase orfB 14 52.60 0 13430..13621 - 63 187730035 - SbBS512_E0015 - IS1 transposase orfA 15 51.69 0 13647..13853 - 68 187733929 - SbBS512_E0016 - hypothetical protein 16 51.17 0 14275..16191 + 638 187731544 dnaK SbBS512_E0017 - chaperone protein DnaK 17 55.26 0 16280..17410 + 376 187730634 dnaJ SbBS512_E0018 - chaperone protein DnaJ 18 51.59 0 18252..19418 + 388 187732952 nhaA SbBS512_E0019 - sodium/proton antiporter nhaA 19 47.89 0 19484..20383 + 299 187732489 nhaR SbBS512_E0020 - transcriptional activator protein NhaR 20 49.21 0 20881..21069 - 62 187733459 - SbBS512_E0021 - transposase 21 53.44 0 21144..21332 + 62 187733923 - SbBS512_E0022 - IS1 ORF2 22 54.11 0 21336..22928 - 530 187732477 - SbBS512_E0023 - IS66 family element, transposase 23 52.75 0 22950..23294 + 114 187732977 - SbBS512_E0024 - hypothetical protein 24 50.24 0 23306..23725 - 139 187731593 - SbBS512_E0025 - transposase family 25 52.38 0 23868..24161 + 97 187731181 - SbBS512_E0026 - IS1 OrfB 26 46.59 -1 24395..24658 - 87 187731624 rpsT SbBS512_E0027 - ribosomal protein S20 27 48.86 0 24761..24979 + 72 187730801 - SbBS512_E0028 - hypothetical protein 28 53.18 0 24987..25928 + 313 187730272 ribF SbBS512_E0029 - riboflavin biosynthesis protein RibF 29 55.73 0 25971..28787 + 938 187730740 ileS SbBS512_E0030 - isoleucyl-tRNA synthetase 30 53.54 0 28787..29281 + 164 187733568 lspA SbBS512_E0031 - signal peptidase II 31 54.22 0 29350..29799 + 149 187730844 fkpB SbBS512_E0032 - FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase 32 55.10 0 29801..30751 + 316 187731568 ispH SbBS512_E0033 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 33 56.07 +1 30817..31731 + 304 187732027 rihC SbBS512_E0034 - nonspecific ribonucleoside hydrolase RihC 34 54.01 0 31898..32719 + 273 187732869 dapB SbBS512_E0035 - dihydrodipicolinate reductase 35 53.35 0 33175..34323 + 382 187733195 carA SbBS512_E0036 - carbamoyl-phosphate synthase, small subunit 36 56.24 +1 34341..37562 + 1073 187733854 carB SbBS512_E0037 - carbamoyl-phosphate synthase, large subunit 37 52.98 0 37683..38186 - 167 187730467 - SbBS512_E0038 - IS1 transposase orfB 38 54.24 0 39787..40317 + 176 187731431 kefF SbBS512_E0040 - glutathione-regulated potassium-efflux system ancillary protein kefF 39 55.72 0 40310..42172 + 620 187732301 kefC SbBS512_E0041 - glutathione-regulated potassium-efflux system protein KefC 40 53.33 0 42364..42843 + 159 187730428 folA SbBS512_E0042 - dihydrofolate reductase 41 55.52 0 42921..43763 - 280 187731973 apaH SbBS512_E0043 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 42 51.85 0 43770..44147 - 125 187731366 apaG SbBS512_E0044 - protein ApaG 43 53.41 0 44150..44971 - 273 187732780 ksgA SbBS512_E0045 - dimethyladenosine transferase 44 56.46 +1 44968..45957 - 329 187734080 pdxA SbBS512_E0046 - 4-hydroxythreonine-4-phosphate dehydrogenase 45 53.92 0 45957..47243 - 428 187733861 surA SbBS512_E0047 - chaperone/peptidyl-prolyl cis-trans isomerase SurA 46 51.42 0 47296..49650 - 784 187733413 imp SbBS512_E0048 - LPS-assembly protein 47 52.45 0 49905..50720 + 271 187730491 djlA SbBS512_E0049 - protein DjlA, DnaJ family 48 54.09 0 50837..51496 - 219 187731746 - SbBS512_E0050 - pseudouridine synthase, RluA family 49 55.11 0 51508..54414 - 968 187731450 rapA SbBS512_E0051 - RNA polymerase associated protein RapA 50 55.40 0 54578..56929 - 783 187730247 polB SbBS512_E0052 - DNA polymerase II 51 54.89 0 57004..57699 - 231 187730282 araD SbBS512_E0053 - L-ribulose-5-phosphate 4-epimerase 52 55.02 0 57899..59401 - 500 187734070 araA SbBS512_E0054 - L-arabinose isomerase 53 58.02 +1 59412..61112 - 566 187733621 araB SbBS512_E0055 - L-ribulokinase 54 52.90 0 61451..62329 + 292 187733147 araC SbBS512_E0056 - arabinose operon regulatory protein 55 54.64 0 62415..63179 + 254 187732393 - SbBS512_E0057 - hypothetical protein 56 57.37 +1 63293..63991 - 232 187731683 thiQ SbBS512_E0058 - thiamine ABC transporter, ATP-binding protein 57 58.16 +1 63975..65585 - 536 187732002 thiP SbBS512_E0059 - thiamine/thiamine pyrophosphate ABC transporter, permease protein 58 52.95 0 65561..66544 - 327 187730746 thiB SbBS512_E0060 - thiamin/thiamin pyrophosphate ABC transporter, periplasmic thiamin/thiamin pyrophospate-binding protein 59 50.00 0 66588..66707 - 39 187730981 - SbBS512_E0061 - putative lipoprotein 60 55.19 0 66708..68363 - 551 187733549 sgrR SbBS512_E0062 - sugar transport-related sRNA regulator SgrR 61 48.11 0 68685..69767 + 360 187732583 setA SbBS512_E0064 - sugar efflux transporter A 62 51.82 0 69816..70421 - 201 187731256 leuD SbBS512_E0065 - 3-isopropylmalate dehydratase, small subunit 63 55.53 0 70432..71832 - 466 187730031 leuC SbBS512_E0066 - 3-isopropylmalate dehydratase, large subunit 64 55.40 0 71835..72926 - 363 187730608 leuB SbBS512_E0067 - 3-isopropylmalate dehydrogenase 65 52.93 0 72926..74497 - 523 187733304 leuA SbBS512_E0068 - 2-isopropylmalate synthase 66 45.50 -1 75337..76281 + 314 187734241 leuO SbBS512_E0069 - transcriptional regulator LeuO 67 37.30 -2 76414..76539 + 41 187734215 - SbBS512_E0070 - hypothetical protein 68 50.41 0 78326..78817 + 163 187733886 ilvH SbBS512_E0072 - acetolactate synthase, small subunit, isozyme III 69 54.93 0 78997..80001 + 334 187733718 fruR SbBS512_E0073 - fructose repressor 70 51.85 0 80603..81061 + 152 187730835 mraZ SbBS512_E0074 - MraZ protein 71 55.20 0 81063..82004 + 313 187731396 mraW SbBS512_E0075 - S-adenosyl-methyltransferase MraW 72 50.55 0 82001..82366 + 121 187733151 ftsL SbBS512_E0076 - cell division protein FtsL 73 53.76 0 82382..84148 + 588 187732555 ftsI SbBS512_E0077 - peptidoglycan synthetase FtsI 74 56.38 +1 84135..85622 + 495 187732212 murE SbBS512_E0078 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 75 54.97 0 85619..86977 + 452 187733976 murF SbBS512_E0079 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 76 53.28 0 86971..88053 + 360 187733257 mraY SbBS512_E0080 - phospho-N-acetylmuramoyl-pentapeptide-transferase 77 55.43 0 88056..89372 + 438 187732828 murD SbBS512_E0081 - UDP-N-acetylmuramoylalanine--D-glutamate ligase 78 53.17 0 89372..90616 + 414 187732373 ftsW SbBS512_E0082 - cell division protein FtsW 79 56.09 +1 90613..91680 + 355 187733785 murG SbBS512_E0083 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 80 54.54 0 91734..93209 + 491 187730669 murC SbBS512_E0084 - UDP-N-acetylmuramate--alanine ligase 81 51.68 0 93202..94122 + 306 187730657 ddlB SbBS512_E0085 - D-alanine--D-alanine ligase B 82 53.55 0 94124..94954 + 276 187730078 ftsQ SbBS512_E0086 - cell division protein FtsQ 83 52.02 0 94951..96213 + 420 187731877 ftsA SbBS512_E0087 - cell division protein FtsA 84 54.17 0 96274..97425 + 383 187733013 ftsZ SbBS512_E0088 - cell division protein FtsZ 85 50.98 0 97526..98443 + 305 187733661 lpxC SbBS512_E0090 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 86 39.78 -2 98415..98600 - 61 187734219 - SbBS512_E0089 - hypothetical protein 87 52.21 0 98599..99186 + 195 187732984 secM SbBS512_E0091 - secretion monitor protein 88 52.33 0 99248..101953 + 901 187731238 secA SbBS512_E0092 - preprotein translocase, SecA subunit 89 49.74 0 102013..102402 + 129 187731665 mutT SbBS512_E0093 - 7,8-dihydro-8-oxoguanine-triphosphatase 90 52.02 0 102509..102706 - 65 187730244 - SbBS512_E0094 - zinc-binding protein YacG 91 51.34 0 102716..103459 - 247 187730150 - SbBS512_E0095 - hypothetical protein 92 52.66 0 103459..104079 - 206 187730773 coaE SbBS512_E0096 - dephospho-CoA kinase 93 51.25 0 104304..105347 + 347 187734255 guaC SbBS512_E0097 - guanosine monophosphate reductase 94 52.62 0 105382..106584 - 400 187732598 pilC SbBS512_E0098 - type IV pilus assembly protein PilC 95 52.98 0 108468..108971 + 167 187731400 - SbBS512_E0101 - IS1 transposase orfB 96 53.36 0 109378..110271 - 297 187731063 nadC SbBS512_E0102 - nicotinate-nucleotide diphosphorylase (carboxylating) 97 54.35 0 110359..110910 + 183 187730596 ampD SbBS512_E0103 - N-acetylmuramoyl-L-alanine amidase 98 51.93 0 110907..111761 + 284 187732020 ampE SbBS512_E0104 - protein AmpE 99 52.66 0 111804..113174 - 456 187731561 aroP SbBS512_E0105 - aromatic amino acid transport protein AroP 100 55.29 0 113718..114482 + 254 187733404 - SbBS512_E0106 - transcriptional regulator, GntR family 51.32 MEAN 4.53 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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