IslandPathversion 1.0

IslandPath Analysis: Shigella boydii CDC 3083-94



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.32 STD DEV: 4.53
Shigella boydii CDC 3083-94, complete genome - 1..4615997
4246 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 51.52	0	190..255	+	21	187731657	thrL	SbBS512_E0001	-	thr operon leader peptide
2	 52.86	0	336..2798	+	820	187733611	thrA	SbBS512_E0002	-	aspartokinase/homoserine dehydrogenase I
3	 55.63	0	2800..3732	+	310	187733021	thrB	SbBS512_E0003	-	homoserine kinase
4	 53.30	0	3733..5019	+	428	187732437	thrC	SbBS512_E0004	-	threonine synthase
5	 49.68	0	5682..6458	-	258	187731324	-	SbBS512_E0006	-	hypothetical protein
6	 53.32	0	6528..7958	-	476	187730478	agcS	SbBS512_E0007	-	amino acid carrier protein
7	 51.15	0	8237..9190	+	317