IslandPath Analysis: Buchnera aphidicola str. Bp (Baizongia pistaciae)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.92   STD DEV: 3.44
Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome - 1..615980
504 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.82	0	469..2349	+	626	27904514	gidA	bbp001	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2	 21.82	-1	2668..3492	+	274	27904515	atpB	bbp002	-	F0F1 ATP synthase subunit A
3	 34.58	+2	3545..3784	+	79	27904516	atpE	bbp003	-	F0F1 ATP synthase subunit C
4	 24.20	0	3909..4379	+	156	27904517	atpF	bbp004	-	ATP synthase B chain
5	 23.09	-1	4392..4928	+	178	27904518	atpH	bbp005	-	ATP synthase delta chain
6	 30.16	0	4942..6486	+	514	27904519	atpA	bbp006	-	F0F1 ATP synthase subunit alpha
7	 24.89	0	6524..7399	+	291	27904520	atpG	bbp007	-	ATP synthase gamma chain
8	 32.69	+1	7427..8824	+	465	27904521	atpD	bbp008	-	F0F1 ATP synthase subunit beta
9	 25.11	0	8826..9263	+	145	27904522	atpC	bbp009	-	ATP synthase epsilon chain
10	 26.92	0	9397..11811	-	804	27904523	gyrB	bbp010	-	putative DNA gyrase subunit b
11	 25.00	0	11994..13109	-	371	27904524	dnaN	bbp011	-	putative DNA polymerase III beta chain
12	 23.00	-1	13114..14487	-	457	27904525	dnaA	bbp012	-	chromosomal replication initiator protein DnaA
13	 34.03	+2	14903..15046	+	47	27904526	rpmH	bbp013	-	50S ribosomal protein L34
14	 26.09	0	15067..15411	+	114	27904527	rnpA	bbp014	-	ribonuclease P protein component
15	 27.91	0	15390..15647	+	85	27904528	yidD	bbp015	-	hypothetical protein
16	 25.26	0	15650..17260	+	536	27904529	yidC	bbp016	-	hypothetical protein
17	 27.90	0	17419..18798	+	459	27904530	trmE	bbp017	-	tRNA modification GTPase TrmE
18	 26.40	0	18848..19510	+	220	27904531	mutH	bbp018	-	DNA mismatch repair protein
19	 34.01	+2	19865..20158	+	97	27904532	groES	bbp020	-	co-chaperonin GroES
20	 35.57	+2	20209..21861	+	550	27904533	groEL	bbp021	-	chaperonin GroEL
21	 26.39	0	21944..22966	-	340	27904534	yjeK	bbp022	-	putative aminomutase
22	 24.91	0	23004..23573	+	189	27904535	efp	bbp023	-	elongation factor P
23	 30.36	+1	23630..24370	-	246	27904536	dnaC	bbp024	-	DNA replication protein DnaC
24	 24.20	0	24595..25185	-	196	27904537	yhhF	bbp025	-	putative methylase
25	 26.21	0	25316..26509	+	397	27904538	ftsY	bbp026	-	FtsY protei
26	 30.90	+1	26669..27532	+	287	27904539	rpoH	bbp027	-	RNA polymerase factor sigma-32
27	 27.93	0	27630..29462	-	610	27904540	glmS	bbp028	-	glucosamine-fructose-6-phosphate aminotransferase isomerizing
28	 25.69	0	29548..30894	-	448	27904541	glmU	bbp029	-	UDP-N-acetylglucosamine pyrophosphorylase
29	 21.77	-1	31189..31992	+	267	27904542	yigL	bbp030	-	putative haloacid dehalogenase-like hydrolase
30	 30.34	0	32186..34456	+	756	27904543	metE	bbp031	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
31	 25.57	0	35810..37420	-	536	27904544	purH	bbp032	-	phosphoribosylaminoimidazolecarboxamide formyltransferase
32	 26.52	0	37493..37771	-	92	27904545	hupA	bbp033	-	DNA-binding protein HU
33	 32.10	+1	38178..42392	-	1404	27904546	rpoC	bbp034	-	DNA-directed RNA polymerase subunit beta'
34	 31.23	+1	42481..46512	-	1343	27904547	rpoB	bbp035	-	DNA-directed RNA polymerase beta chain
35	 30.08	0	46740..47108	-	122	27904548	rplL	bbp036	-	50S ribosomal protein L7/L12
36	 29.59	0	47182..47688	-	168	27904549	rplJ	bbp037	-	50S ribosomal protein L10
37	 26.50	0	47970..48671	-	233	27904550	rplA	bbp038	-	50S ribosomal protein L1
38	 29.93	0	48668..49108	-	146	27904551	rplK	bbp039	-	50S ribosomal protein L11
39	 31.87	+1	49323..49868	-	181	27904552	nusG	bbp040	-	transcription antitermination protein
40	 24.22	0	49873..50256	-	127	27904553	secE	bbp041	-	preprotein translocase SecE subunit
41	 24.38	0	51395..52399	-	334	27904554	murB	bbp046	-	UDP-N-acetylenolpyruvoylglucosamine reductase
42	 25.56	0	52577..53464	+	295	27904555	metF	bbp047	-	5,10-methylenetetrahydrofolate reductase
43	 31.87	+1	53764..54993	+	409	27904556	argG	bbp048	-	argininosuccinate synthase
44	 27.96	0	55107..56483	+	458	27904557	argH	bbp049	-	argininosuccinate lyase
45	 20.05	-2	56667..57110	+	147	27904558	yibN	bbp050	-	hypothetical protein
46	 28.89	0	57358..58122	+	254	27904559	cysE	bbp051	-	serine acetyltransferase
47	 30.98	+1	58313..60142	-	609	27904560	rpoD	bbp052	-	RNA polymerase sigma factor RpoD
48	 23.89	0	60380..62116	-	578	27904561	dnaG	bbp053	-	DNA primase
49	 32.87	+1	62223..62438	-	71	27904562	rpsU	bbp054	-	30S ribosomal protein S21
50	 29.01	0	62606..63622	+	338	27904563	gcp	bbp055	-	putative O-sialoglycoprotein endopeptidase
51	 33.18	+1	63734..64369	-	211	27904564	ribB	bbp056	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
52	 25.56	0	64717..65976	+	419	27904565	cca	bbp057	-	tRNA CCA-pyrophosphorylase
53	 23.67	0	65973..66779	-	268	27904566	bacA	bbp058	-	bacitracin resistance protein
54	 25.84	0	66905..67411	-	168	27904567	crr	bbp059	-	glucose-specific PTS system component
55	 27.44	0	67420..69150	-	576	27904568	ptsI	bbp060	-	phosphoenolpyruvate-protein phosphotransferase
56	 28.68	0	69325..69582	-	85	27904569	ptsH	bbp061	-	phosphocarrier protein HPr
57	 24.37	0	71142..73160	+	672	27904570	lig	bbp062	-	DNA ligase
58	 26.29	0	73495..74913	+	472	27904571	gltX	bbp065	-	glutamyl-tRNA synthetase
59	 21.45	-1	75190..75492	-	100	27904572	fliE	bbp067	-	flagellar hook-basal body complex protein FliE
60	 25.42	0	75688..77355	+	555	27904573	fliF	bbp068	-	flagellar M-ring protein
61	 21.70	-1	77360..78322	+	320	27904574	fliG	bbp069	-	flagellar motor switch protein FliG
62	 24.63	0	78353..79030	+	225	27904575	fliH	bbp070	-	flagellar assembly protein FliH
63	 30.26	0	79027..80391	+	454	27904576	fliI	bbp071	-	flagellum-specific ATP synthase
64	 22.01	-1	80408..80875	+	155	27904577	fliJ	bbp072	-	flagellar FliJ protein
65	 18.77	-2	80868..81938	+	356	27904578	fliK	bbp073	-	flagellar FliK protein
66	 19.38	-2	82082..83077	+	331	27904579	fliM	bbp074	-	flagellar motor switch protein FliM
67	 23.46	-1	83070..83474	+	134	27904580	fliN	bbp075	-	flagellar motor switch protein FliN
68	 28.16	0	83536..84618	+	360	27904581	fliOP	bbp076	-	type III secretion system protein
69	 26.37	0	84702..84974	+	90	27904582	fliQ	bbp077	-	flagellar biosynthetic protein FliQ
70	 22.22	-1	84974..85747	+	257	27904583	fliR	bbp078	-	flagellar biosynthetic protein FliR
71	 22.62	-1	86140..86307	-	55	27904584	rpmG	bbp079	-	50S ribosomal protein L33
72	 27.56	0	86349..86573	-	74	27904585	rpmB	bbp080	-	50S ribosomal protein L28
73	 17.22	-2	86752..88905	+	717	27904586	ytfN	bbp081	-	RpoD protein
74	 28.03	0	89898..90425	-	175	27904587	ppa	bbp082	-	inorganic pyrophosphatase
75	 27.17	0	90540..91886	+	448	27904588	pmbA	bbp083	-	PmbA protein
76	 25.03	0	92362..93240	-	292	27904589	yraL	bbp085	-	putative tetrapyrrole methylase
77	 30.15	0	93527..94750	+	407	27904590	fabB	bbp086	-	3-oxoacyl-[acyl-carrier-protein] synthase I
78	 28.92	0	95374..96324	+	316	27904591	talA	bbp087	-	transaldolase B
79	 33.18	+1	96422..98422	+	666	27904592	tktB	bbp088	-	transketolase
80	 30.25	0	98589..99722	+	377	27904593	dapE	bbp089	-	succinyl-diaminopimelate desuccinylase
81	 30.40	+1	100159..101043	-	294	27904594	dapA	bbp090	-	dihydrodipicolinate synthase
82	 34.46	+2	101526..102593	-	355	27904595	aroC	bbp091	-	chorismate synthase
83	 23.54	0	102976..103506	+	176	27904596	yb2331	bbp092	-	hypothetical protein
84	 30.22	0	103996..104895	+	299	27904597	hisG	bbp093	-	ATP phosphoribosyltransferase
85	 29.43	0	104901..106208	+	435	27904598	hisD	bbp094	-	histidinol dehydrogenase
86	 26.32	0	106210..107292	+	360	27904599	hisC	bbp095	-	histidinol-phosphate aminotransferase
87	 29.24	0	107294..108367	+	357	27904600	hisB	bbp096	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
88	 25.89	0	108368..108958	+	196	27904601	hisH	bbp097	-	amidotransferase HisH
89	 26.72	0	108962..109687	+	241	27904602	hisA	bbp098	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
90	 30.50	+1	109681..110457	+	258	27904603	hisF	bbp099	-	imidazole glycerol phosphate synthase subunit HisF
91	 26.25	0	110451..111071	+	206	27904604	hisI	bbp100	-	phosphoribosyl-AMP cyclohydrolase
92	 27.86	0	111225..112631	+	468	27904605	gnd	bbp101	-	6-phosphogluconate dehydrogenase
93	 27.66	0	112936..113517	+	193	27904606	dcd	bbp102	-	deoxycytidine triphosphate deaminase
94	 26.80	0	113619..115256	+	545	27904607	metG	bbp103	-	methionyl-tRNA synthetase
95	 23.08	-1	115306..116622	-	438	27904608	mesJ	bbp104	-	putative cell cycle protein MesJ
96	 25.37	0	116861..118216	-	451	27904609	norM	bbp106	-	multidrug resistance protein NorM
97	 27.07	0	118530..119168	+	212	27904610	ribE	bbp107	-	riboflavin synthase subunit alpha
98	 26.50	0	119467..120051	+	194	27904611	rnfA	bbp108	-	electron transport complex protein RnfA
99	 29.02	0	120063..120572	+	169	27904612	rnfB	bbp109	-	electron transport complex protein RnfB
100	 24.18	0	120590..122107	+	505	27904613	rnfC	bbp110	-	electron transport complex protein RnfC
26.92	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.