IslandPath Analysis: Natranaerobius thermophilus JW/NM-WN-LF



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.34   STD DEV: 3.75
Natranaerobius thermophilus JW/NM-WN-LF, complete genome - 1..3165557
2882 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.99	0	146..1507	+	453	188584643	-	Nther_0001	-	chromosomal replication initiator protein DnaA
2	 31.36	-1	1780..2892	+	370	188584644	-	Nther_0002	-	DNA polymerase III, beta subunit
3	 30.63	-1	2912..3133	+	73	188584645	-	Nther_0003	-	S4-like RNA binding protein
4	 31.70	-1	3167..4327	+	386	188584646	-	Nther_0004	-	DNA replication and repair protein RecF
5	 30.68	-1	4308..5210	+	300	188584647	-	Nther_0005	-	hypothetical protein
6	 28.33	-2	5218..5517	+	99	188584648	-	Nther_0006	-	hypothetical protein
7	 35.31	0	5587..7509	+	640	188584649	-	Nther_0007	-	DNA gyrase subunit B
8	 35.52	0	7594..10017	+	807	188584650	-	Nther_0008	-	DNA gyrase subunit A
9	 33.33	0	16215..17795	+	526	188584651	-	Nther_0009	-	polysaccharide biosynthesis protein
10	 37.42	0	18000..20078	+	692	188584652	-	Nther_0010	-	translation elongation factor 2 (EF-2/EF-G)
11	 33.97	0	20325..21422	+	365	188584653	-	Nther_0011	-	D-alanine--D-alanine ligase
12	 40.32	+1	21504..22391	+	295	188584654	-	Nther_0012	-	pyridoxine biosynthesis protein
13	 36.25	0	22970..24238	+	422	188584655	-	Nther_0013	-	seryl-tRNA synthetase
14	 34.80	0	24786..25262	+	158	188584656	-	Nther_0014	-	tRNA-adenosine deaminase
15	 34.75	0	26074..27843	+	589	188584657	-	Nther_0015	-	DNA polymerase III, subunits gamma and tau
16	 38.68	0	27861..28178	+	105	188584658	-	Nther_0016	-	hypothetical protein
17	 37.33	0	28179..28778	+	199	188584659	-	Nther_0017	-	DNA replication and repair protein RecR
18	 28.66	-2	28964..29284	+	106	188584660	-	Nther_0018	-	hypothetical protein
19	 31.56	-1	29339..29620	+	93	188584661	-	Nther_0019	-	pro-sigmaK processing inhibitor BofA
20	 38.81	0	29826..30482	+	218	188584662	-	Nther_0020	-	hypothetical protein
21	 38.49	0	30553..34080	+	1175	188584663	-	Nther_0021	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
22	 41.46	+1	34212..35294	+	360	188584664	-	Nther_0022	-	2-oxoglutarate ferredoxin oxidoreductase, alpha subunit
23	 40.53	+1	35322..36071	+	249	188584665	-	Nther_0023	-	2-oxoglutarate ferredoxin oxidoreductase, beta subunit
24	 41.21	+1	36074..36670	+	198	188584666	-	Nther_0024	-	2-oxoglutarate ferredoxin oxidoreductase, gamma subunit
25	 39.46	0	36688..36948	+	86	188584667	-	Nther_0025	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
26	 31.50	-1	37023..38330	-	435	188584668	-	Nther_0026	-	transcriptional regulator, XRE family
27	 34.01	0	38506..40578	+	690	188584669	-	Nther_0027	-	cell division protein FtsA
28	 34.73	0	40685..42049	-	454	188584670	-	Nther_0028	-	Integrase catalytic region
29	 38.61	0	42241..43698	+	485	188584671	-	Nther_0029	-	inosine-5'-monophosphate dehydrogenase
30	 40.07	0	43979..45328	+	449	188584672	-	Nther_0030	-	sodium:neurotransmitter symporter
31	 35.67	0	45502..46953	+	483	188584673	-	Nther_0031	-	Orn/Lys/Arg decarboxylase major region
32	 36.55	0	46990..48327	+	445	188584674	-	Nther_0032	-	AAA ATPase
33	 35.43	0	48342..48962	+	206	188584675	-	Nther_0033	-	dTMP kinase
34	 39.88	0	49007..49342	+	111	188584676	-	Nther_0034	-	protein of unknown function DUF970
35	 35.28	0	49378..49839	+	153	188584677	-	Nther_0035	-	protein of unknown function DUF327
36	 40.46	+1	49918..50661	-	247	188584678	-	Nther_0036	-	zinc/iron permease
37	 36.35	0	50786..51847	+	353	188584679	-	Nther_0037	-	Integrase catalytic region
38	 34.68	0	52041..53003	+	320	188584680	-	Nther_0038	-	DNA-directed DNA polymerase
39	 36.74	0	53006..53914	+	302	188584681	-	Nther_0039	-	PSP1 domain protein
40	 37.51	0	53936..55492	-	518	188584682	-	Nther_0040	-	UDP-N-acetylmuramyl-tripeptide synthetase
41	 34.97	0	55590..56447	+	285	188584683	-	Nther_0041	-	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
42	 37.70	0	56542..56793	-	83	188584684	-	Nther_0042	-	transcriptional regulator, AbrB family
43	 37.14	0	57085..59052	+	655	188584685	-	Nther_0043	-	methionyl-tRNA synthetase
44	 35.67	0	59054..59824	+	256	188584686	-	Nther_0044	-	hydrolase, TatD family
45	 37.44	0	59836..60687	+	283	188584687	-	Nther_0045	-	rare lipoprotein A
46	 33.00	0	60730..61638	+	302	188584688	-	Nther_0046	-	dimethyladenosine transferase
47	 35.43	0	61686..62162	+	158	188584689	-	Nther_0047	-	protein of unknown function DUF458
48	 32.96	0	62269..62535	+	88	188584690	-	Nther_0048	-	protein of unknown function DUF1021
49	 31.82	-1	62544..63005	-	153	188584691	-	Nther_0049	-	hypothetical protein
50	 34.32	0	63196..64719	+	507	188584692	-	Nther_0050	-	Peptidoglycan-binding LysM
51	 35.53	0	64751..65023	-	90	188584693	-	Nther_0051	-	protein of unknown function UPF0016
52	 36.13	0	65183..66433	+	416	188584694	-	Nther_0052	-	Serine-type D-Ala-D-Ala carboxypeptidase
53	 40.83	+1	66478..67518	+	346	188584695	-	Nther_0053	-	Quinolinate phosphoribosyl transferase
54	 37.04	0	67617..68426	+	269	188584696	-	Nther_0054	-	cyanophycinase
55	 38.62	0	68430..71114	+	894	188584697	-	Nther_0055	-	cyanophycin synthetase
56	 36.79	0	71216..72142	+	308	188584698	-	Nther_0056	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
57	 33.33	0	72142..72927	+	261	188584699	-	Nther_0057	-	hypothetical protein
58	 34.88	0	72951..73793	+	280	188584700	-	Nther_0058	-	purine operon repressor, PurR
59	 35.74	0	73850..74140	+	96	188584701	-	Nther_0059	-	SpoVG family protein
60	 36.46	0	74232..75638	+	468	188584702	-	Nther_0060	-	glucosamine-1-phosphate N-acetyltransferase, UDP-N-acetylglucosamine pyrophosphorylase
61	 38.29	0	75631..76599	+	322	188584703	-	Nther_0061	-	ribose-phosphate pyrophosphokinase
62	 36.42	0	76689..77336	+	215	188584704	-	Nther_0062	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
63	 35.26	0	77360..77983	+	207	188584705	-	Nther_0063	-	Aminoacyl-tRNA hydrolase
64	 41.23	+1	78114..79670	+	518	188584706	-	Nther_0064	-	AbgT putative transporter
65	 38.64	0	79807..80352	-	181	188584707	-	Nther_0065	-	protein of unknown function DUF204
66	 29.90	-1	80546..80953	+	135	188584708	-	Nther_0066	-	hypothetical protein
67	 35.37	0	81091..84681	+	1196	188584709	-	Nther_0067	-	transcription-repair coupling factor
68	 38.74	0	84784..85338	+	184	188584710	-	Nther_0068	-	transcriptional regulator, AbrB family
69	 33.33	0	85404..86558	+	384	188584711	-	Nther_0069	-	MazG family protein
70	 35.13	0	86675..86953	+	92	188584712	-	Nther_0070	-	nucleoid protein Hbs
71	 43.52	+1	87070..88080	+	336	188584713	-	Nther_0071	-	SpoIID/LytB domain protein
72	 35.09	0	88273..88557	+	94	188584714	-	Nther_0072	-	sporulation protein YabP
73	 26.23	-2	88571..89077	+	168	188584715	-	Nther_0073	-	hypothetical protein
74	 31.23	-1	89194..89574	+	126	188584716	-	Nther_0074	-	cell division protein FtsL
75	 38.02	0	89660..90022	+	120	188584717	-	Nther_0075	-	RNA binding S1 domain protein
76	 33.10	0	90085..91368	+	427	188584718	-	Nther_0076	-	PAS/PAC sensor signal transduction histidine kinase
77	 35.67	0	91352..92251	+	299	188584719	-	Nther_0077	-	Ppx/GppA phosphatase
78	 34.41	0	92567..95068	+	833	188584720	-	Nther_0078	-	stage II sporulation protein E, protein serine/threonine phosphatase
79	 33.27	0	95138..96667	+	509	188584721	-	Nther_0079	-	tRNA(Ile)-lysidine synthetase
80	 34.62	0	96706..97251	+	181	188584722	-	Nther_0080	-	hypoxanthine phosphoribosyltransferase
81	 38.90	0	97364..99445	+	693	188584723	-	Nther_0081	-	FtsH-2 peptidase. Metallo peptidase. MEROPS family M41, membrane protease FtsH catalytic subunit
82	 42.67	+1	99610..100155	+	181	188584724	-	Nther_0082	-	membrane protein
83	 39.86	0	100248..101918	+	556	188584725	-	Nther_0083	-	Formate-tetrahydrofolate ligase
84	 32.62	0	102079..103482	-	467	188584726	-	Nther_0084	-	hypothetical protein
85	 36.63	0	103637..104608	+	323	188584727	-	Nther_0085	-	biotin--acetyl-CoA-carboxylase ligase
86	 36.06	0	104620..105390	+	256	188584728	-	Nther_0086	-	pantothenate kinase
87	 41.35	+1	105565..105801	+	78	188584729	-	Nther_0087	-	hypothetical protein
88	 39.67	0	105798..106160	+	120	188584730	-	Nther_0088	-	hypothetical protein
89	 41.97	+1	106186..106602	+	138	188584731	-	Nther_0089	-	hypothetical protein
90	 35.67	0	106768..108393	+	541	188584732	-	Nther_0090	-	PAS modulated sigma54 specific transcriptional regulator, Fis family
91	 37.15	0	108439..108831	+	130	188584733	-	Nther_0091	-	DRTGG domain protein
92	 37.24	0	108824..109258	+	144	188584734	-	Nther_0092	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
93	 35.00	0	109303..110685	+	460	188584735	-	Nther_0093	-	Fe-S cluster domain protein
94	 39.08	0	110750..111097	+	115	188584736	-	Nther_0094	-	HPr kinase
95	 35.85	0	111090..111845	+	251	188584737	-	Nther_0095	-	PHP domain protein
96	 40.08	0	111915..112403	+	162	188584738	-	Nther_0096	-	NADH-quinone oxidoreductase, E subunit
97	 35.69	0	112406..112957	+	183	188584739	-	Nther_0097	-	histidine kinase
98	 34.93	0	112959..113333	+	124	188584740	-	Nther_0098	-	ferredoxin-like protein
99	 40.97	+1	113355..115148	+	597	188584741	-	Nther_0099	-	NADH dehydrogenase (quinone)
100	 39.82	0	115206..117887	+	893	188584742	-	Nther_0100	-	formate dehydrogenase, alpha subunit
36.34	MEAN

3.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.