IslandPath Analysis: Yersinia pestis CO92



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.92   STD DEV: 4.90
Yersinia pestis CO92, complete genome - 1..4653728
3885 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.86	-1	271..711	-	146	16120354	-	YPO0001	-	flavodoxin
2	 41.56	-1	804..1265	-	153	16120355	asnC	YPO0002	-	DNA-binding transcriptional regulator AsnC
3	 45.52	0	1435..2427	+	330	16120356	asnA	YPO0003	-	asparagine synthetase AsnA
4	 47.72	0	2526..3992	-	488	16120357	yieM	YPO0004	-	hypothetical protein
5	 46.65	0	3996..5549	-	517	16120358	-	YPO0005	-	regulatory ATPase RavA
6	 45.80	0	5823..7691	+	622	16120359	trkD	YPO0006	-	potassium transport protein Kup
7	 48.10	0	7896..8315	+	139	16120360	-	YPO0007	-	D-ribose pyranase
8	 50.05	0	8366..9292	+	308	16120361	rbsK	YPO0008	-	ribokinase
9	 46.46	0	9512..10936	-	474	16120362	-	YPO0009	-	putative membrane transport protein
10	 44.06	0	11016..11705	-	229	16120363	-	YPO0010	-	putative GntR-famly transcriptional regulator
11	 49.79	0	17906..19114	+	402	16120364	y1062	YPO0011	-	transposase for the IS285 insertion element
12	 40.68	-1	19172..19702	-	176	16120365	mobB	YPO0012	-	molybdopterin-guanine dinucleotide biosynthesis protein B
13	 43.30	0	19702..20343	-	213	16120366	mobA	YPO0013	-	molybdopterin-guanine dinucleotide biosynthesis protein A
14	 41.11	-1	20443..20712	+	89	16120367	-	YPO0013a	-	hypothetical protein
15	 46.50	0	20792..21778	+	328	16120368	-	YPO0014	-	serine/threonine protein kinase
16	 42.15	-1	21806..22429	+	207	16120369	dsbA	YPO0015	-	periplasmic protein disulfide isomerase I
17	 47.52	0	22921..25719	+	932	16120370	polA	YPO0017	-	DNA polymerase I
18	 45.97	0	26128..26586	+	152	16120371	tnp	YPO0018	-	transposase for the IS1541 insertion element
19	 46.54	0	26838..27488	-	216	16120372	-	YPO0019	-	GTPase EngB
20	 48.50	0	28233..28799	+	188	16120373	-	YPO0020	-	hypothetical protein
21	 47.74	0	28982..30355	+	457	16120374	hemN	YPO0021	-	coproporphyrinogen III oxidase
22	 52.65	0	30409..31821	-	470	16120375	glnG	YPO0022	-	nitrogen regulation protein NR(I)
23	 49.24	0	31829..32878	-	349	16120376	glnL	YPO0023	-	nitrogen regulation protein NR(II)
24	 50.78	0	33131..34540	-	469	16120377	glnA	YPO0024	-	glutamine synthetase
25	 42.77	-1	34726..34884	-	52	16120378	-	YPO0025	-	hypothetical protein
26	 49.01	0	35102..36925	+	607	16120379	bipA	YPO0026	-	putative GTPase
27	 44.16	0	37247..37837	+	196	16120380	-	YPO0027	-	phosphatase
28	 48.02	0	37934..38818	+	294	16120381	rbn	YPO0028	-	ribonuclease BN
29	 48.86	0	38825..39262	+	145	16120382	-	YPO0029	-	D-tyrosyl-tRNA deacylase
30	 50.45	0	39336..40118	-	260	16120383	-	YPO0030	-	transposase/IS protein
31	 52.79	0	40115..41137	-	340	16120384	-	YPO0031	-	transposase for insertion sequence IS100
32	 50.97	0	41407..42330	+	307	16120385	-	YPO0032	-	hypothetical protein
33	 48.30	0	42465..44174	-	569	16120386	-	YPO0033	-	hypothetical protein
34	 50.51	0	44322..45707	-	461	16120387	-	YPO0034	-	putative membrane permease
35	 50.04	0	45945..47159	+	404	16120388	gltS	YPO0035	-	sodium/glutamate symport carrier protein
36	 51.63	0	47525..49606	-	693	16120389	recG	YPO0036	-	ATP-dependent DNA helicase RecG
37	 49.64	0	49607..50299	-	230	16120390	trmH	YPO0037	-	tRNA guanosine-2'-O-methyltransferase
38	 48.93	0	50305..52413	-	702	16120391	spoT	YPO0038	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
39	 51.45	0	52433..52708	-	91	16120392	rpoZ	YPO0039	-	DNA-directed RNA polymerase subunit omega
40	 46.47	0	52763..53386	-	207	16120393	gmk	YPO0040	-	guanylate kinase
41	 48.12	0	53787..55490	+	567	16120394	ligB	YPO0041	-	NAD-dependent DNA ligase LigB
42	 47.28	0	55503..56126	-	207	16120395	-	YPO0042	-	hypothetical protein
43	 48.50	0	56529..57392	-	287	16120396	-	YPO0043	-	hypothetical protein
44	 51.32	0	57519..58235	+	238	16120397	rph	YPO0044	-	ribonuclease PH
45	 50.77	0	58402..59049	+	215	16120398	pyrE	YPO0045	-	orotate phosphoribosyltransferase
46	 47.91	0	59184..59780	-	198	16120399	slmA	YPO0046	-	nucleoid occlusion protein
47	 49.12	0	59902..60357	-	151	16120400	dut	YPO0047	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
48	 48.15	0	60338..61552	-	404	161486896	dfp	YPO0048	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
49	 45.44	0	61749..62417	+	222	16120402	radC	YPO0049	-	DNA repair protein RadC
50	 50.63	0	62680..62916	+	78	16120403	rpmB	YPO0050	-	50S ribosomal protein L28
51	 39.29	-1	62928..63095	+	55	16120404	rpmG	YPO0051	-	50S ribosomal protein L33
52	 48.89	0	63178..63987	+	269	16120405	mutM	YPO0052	-	formamidopyrimidine-DNA glycosylase
53	 46.25	0	63993..64472	-	159	16120406	coaD	YPO0053	-	phosphopantetheine adenylyltransferase
54	 46.62	0	64469..65251	-	260	16120407	kdtX	YPO0054	-	lipopolysaccharide core biosynthesis glycosyl transferase
55	 50.55	0	65252..66529	-	425	16120408	kdtA	YPO0055	-	3-deoxy-D-manno-octulosonic-acid transferase
56	 50.72	0	66949..67914	-	321	16120409	rfaC	YPO0056	-	ADP-heptose:LPS heptosyl transferase I
57	 51.74	0	67914..68978	-	354	16120410	rfaF	YPO0057	-	ADP-heptose:LPS heptosyltransferase II
58	 45.12	0	69009..69941	-	310	16120411	rfaD	YPO0058	-	ADP-L-glycero-D-mannoheptose-6-epimerase
59	 50.17	0	70187..71398	+	403	16120412	kbl	YPO0059	-	2-amino-3-ketobutyrate coenzyme A ligase
60	 48.15	0	71408..72433	+	341	16120413	tdh	YPO0060	-	L-threonine 3-dehydrogenase
61	 50.04	0	73529..74899	-	456	161486895	-	YPO0063	-	hypothetical protein
62	 50.13	0	74909..76456	-	515	16120415	-	YPO0064	-	phosphoglyceromutase
63	 45.06	0	76853..77287	+	144	16120416	-	YPO0065	-	hypothetical protein
64	 51.41	0	77406..77654	+	82	16120417	grxC	YPO0066	-	glutaredoxin 3
65	 48.43	0	77742..78218	+	158	16120418	secB	YPO0067	-	preprotein translocase subunit SecB
66	 51.57	0	78218..79237	+	339	16120419	gpsA	YPO0068	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
67	 45.39	0	79297..79437	+	46	16120420	-	YPO0069	-	hypothetical protein
68	 49.76	0	79503..80324	+	273	16120421	cysE	YPO0070	-	serine acetyltransferase
69	 49.08	0	80447..80935	-	162	16120422	-	YPO0071	-	putative methyltransferase
70	 52.02	0	81124..82188	+	354	16120423	-	YPO0072	-	bifunctional regulatory protein/DNA repair protein
71	 49.89	0	82237..83613	-	458	16120424	cpxA	YPO0073	-	two-component sensor protein
72	 49.93	0	83610..84308	-	232	16120425	cpxR	YPO0074	-	DNA-binding transcriptional regulator CpxR
73	 46.63	0	84482..84970	+	162	16120426	cpxP	YPO0075	-	periplasmic stress adaptor protein CpxP
74	 51.04	0	85648..86607	+	319	16120427	-	YPO0076	-	hypothetical protein
75	 48.50	0	87169..88071	+	300	16120428	fieF	YPO0077	-	ferrous iron efflux protein F
76	 47.15	0	88289..89272	+	327	16120429	pfkA	YPO0078	-	6-phosphofructokinase
77	 46.06	0	89493..90482	+	329	16120430	sbp1	YPO0079	-	sulfate transporter subunit
78	 48.23	0	90732..91550	-	272	16120431	-	YPO0080	-	hypothetical protein
79	 44.61	0	91626..93053	-	475	16120432	-	YPO0081	-	putative membrane transport protein
80	 54.06	+1	93119..93832	-	237	16120433	-	YPO0082	-	hypothetical protein
81	 47.37	0	93829..94761	-	310	16120434	-	YPO0083	-	hypothetical protein
82	 51.19	0	94892..95938	+	348	16120435	-	YPO0084	-	transcriptional regulator
83	 48.96	0	96170..96937	-	255	16120436	tpiA	YPO0085	-	triosephosphate isomerase
84	 45.13	0	97066..97701	-	211	16120437	-	YPO0086	-	hypothetical protein
85	 51.95	0	97849..98283	+	144	16120438	-	YPO0087	-	hypothetical protein
86	 52.07	0	98624..99370	-	248	16120439	fpr	YPO0088	-	ferredoxin-NADP reductase
87	 50.88	0	101532..102380	-	282	16120440	glpF	YPO0091	-	glycerol uptake facilitator protein
88	 39.17	-1	102390..102629	-	79	16120441	-	YPO0092	-	hypothetical protein
89	 42.92	-1	103008..103247	+	79	16120442	-	YPO0093	-	hypothetical protein
90	 45.75	0	103455..103913	-	152	16120443	tnp	YPO0094	-	transposase for the IS1541 insertion element
91	 50.45	0	105645..106427	-	260	16120444	-	YPO0096	-	transposase/IS protein
92	 52.59	0	106424..107446	-	340	16120445	-	YPO0097	-	transposase for insertion sequence IS100
93	 38.83	-1	108358..109593	-	411	16120446	-	YPO0099	-	hypothetical protein
94	 45.83	0	109863..110102	+	79	16120447	-	YPO0100	-	hypothetical protein
95	 29.33	-2	110277..110426	+	49	16120448	-	YPO0101	-	hypothetical protein
96	 53.16	+1	110732..111316	+	194	16120449	-	YPO0102	-	hypothetical protein
97	 47.53	0	111433..111918	-	161	16120450	menG	YPO0103	-	ribonuclease activity regulator protein RraA
98	 49.02	0	112060..112977	-	305	16120451	menA	YPO0104	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
99	 48.80	0	113213..114544	-	443	16120452	hslU	YPO0105	-	ATP-dependent protease ATP-binding subunit
100	 48.76	0	114615..115139	-	174	16120453	hslV	YPO0106	-	ATP-dependent protease peptidase subunit
47.92	MEAN

4.90	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.