IslandPath Analysis: Synechococcus sp. WH 8102



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.02   STD DEV: 6.10
Synechococcus sp. WH 8102, complete genome - 1..2434428
2519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.88	0	174..1331	+	385	33864540	dnaN	SYNW0001	-	DNA polymerase III subunit beta
2	 62.81	0	1333..2058	+	241	33864541	-	SYNW0002	-	hypothetical protein
3	 62.20	0	2103..4409	+	768	33864542	purL	SYNW0003	-	phosphoribosylformylglycinamidine synthase II
4	 59.56	0	4393..5898	+	501	33864543	purF	SYNW0004	-	amidophosphoribosyltransferase
5	 60.40	0	5899..8373	-	824	33864544	-	SYNW0005	-	putative DNA topoisomerase chain A
6	 54.42	0	8419..9300	-	293	33864545	-	SYNW0006	-	hypothetical protein
7	 60.46	0	9319..10284	-	321	33864546	-	SYNW0007	-	hypothetical protein
8	 59.07	0	10334..10978	+	214	33864547	-	SYNW0008	-	hypothetical protein
9	 55.24	0	11028..11762	+	244	33864548	-	SYNW0009	-	hypothetical protein
10	 59.75	0	11766..12401	+	211	33864549	nusB	SYNW0010	-	transcription antitermination protein NusB
11	 60.01	0	12401..13858	+	485	33864550	ftsY	SYNW0011	-	signal recognition particle docking protein FtsY
12	 60.41	0	13895..15316	+	473	33864551	-	SYNW0012	-	hypothetical protein
13	 58.40	0	15337..16752	+	471	33864552	argH	SYNW0013	-	argininosuccinate lyase
14	 66.82	+1	16879..17523	+	214	33864553	-	SYNW0014	-	RNA recognition motif-containing protein
15	 62.84	0	17529..18521	-	330	33864554	-	SYNW0015	-	tRNA-dihydrouridine synthase A
16	 58.97	0	18563..19069	+	168	33864555	-	SYNW0016	-	hypothetical protein
17	 61.58	0	19080..20318	+	412	33864556	-	SYNW0017	-	hypothetical protein
18	 54.47	0	20293..21366	-	357	33864557	pilC	SYNW0018	-	pili biogenesis protein
19	 58.97	0	22538..24409	-	623	33864558	gspE1	SYNW0022	-	general secretion pathway protein E
20	 59.82	0	24509..25165	+	218	33864559	grpE	SYNW0023	-	putative heat shock protein GrpE
21	 62.87	0	25165..26298	+	377	33864560	dnaJ	SYNW0024	-	DnaJ protein
22	 61.90	0	26298..26528	+	76	33864561	-	SYNW0025	-	hypothetical protein
23	 61.11	0	26535..27434	+	299	33864562	-	SYNW0026	-	hypothetical protein
24	 60.82	0	27409..27750	-	113	33864563	-	SYNW0027	-	hypothetical protein
25	 63.67	0	27775..28674	-	299	33864564	murB	SYNW0028	-	UDP-N-acetylenolpyruvoylglucosamine reductase
26	 62.04	0	28674..30077	-	467	33864565	murC	SYNW0029	-	UDP-N-acetylmuramate-alanine ligase
27	 59.84	0	30250..31275	+	341	33864566	gap2	SYNW0030	-	glyceraldehyde 3-phosphate dehydrogenase (NADP+)
28	 65.15	0	31341..32327	-	328	33864567	thiL	SYNW0031	-	putative thiamine monophosphate kinase
29	 60.36	0	32324..33433	-	369	33864568	-	SYNW0032	-	putative cyclophilin-type peptidyl-prolyl cis-trans isomerase
30	 59.04	0	33466..34029	+	187	33864569	efp	SYNW0033	-	elongation factor P
31	 62.45	0	34026..34499	+	157	33864570	accB	SYNW0034	-	biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase
32	 63.73	0	34496..35518	-	340	33864571	pdxA	SYNW0035	-	4-hydroxythreonine-4-phosphate dehydrogenase
33	 57.06	0	35524..35700	+	58	33864572	-	SYNW0036	-	hypothetical protein
34	 64.13	0	35685..36590	-	301	33864573	-	SYNW0037	-	hypothetical protein
35	 55.22	0	36800..37201	-	133	33864574	-	SYNW0038	-	HNH endonuclease:HNH nuclease
36	 64.26	0	37349..38968	+	539	33864575	-	SYNW0039	-	helicase
37	 61.03	0	39293..39718	-	141	33864576	-	SYNW0040	-	hypothetical protein
38	 67.06	+1	39765..40268	-	167	33864577	-	SYNW0041	-	hypothetical protein
39	 59.70	0	40277..40678	+	133	33864578	-	SYNW0042	-	hypothetical protein
40	 57.58	0	40717..40947	+	76	33864579	-	SYNW0043	-	hypothetical protein
41	 50.48	-1	41017..41226	+	69	33864580	-	SYNW0044	-	hypothetical protein
42	 62.84	0	41347..42573	-	408	33864581	DHSS	SYNW0045	-	soluble hydrogenase small subunit
43	 65.82	0	42588..43655	+	355	33864582	cbiD	SYNW0046	-	cobalt-precorrin-6A synthase
44	 61.94	0	43692..45278	+	528	33864583	guaA	SYNW0047	-	bifunctional GMP synthase/glutamine amidotransferase protein
45	 64.05	0	45331..45942	+	203	33864584	-	SYNW0048	-	hypothetical protein
46	 63.91	0	45952..46314	+	120	33864585	-	SYNW0049	-	hypothetical protein
47	 62.70	0	46318..48105	+	595	33864586	-	SYNW0050	-	putative penicillin-binding protein
48	 64.22	0	48109..49254	-	381	33864587	sqdX	SYNW0051	-	SqdX
49	 61.74	0	49268..50464	-	398	33864588	sqdB	SYNW0052	-	sulfolipid (UDP-sulfoquinovose) biosynthesis protein
50	 62.07	0	50538..50711	-	57	33864589	-	SYNW0053	-	high light-inducible protein
51	 64.00	0	50807..51631	-	274	33864590	thiG	SYNW0054	-	thiazole synthase
52	 59.42	0	51683..52234	+	183	33864591	-	SYNW0055	-	hypothetical protein
53	 56.78	0	52258..52773	-	171	33864592	-	SYNW0056	-	hypothetical protein
54	 62.36	0	52783..53130	-	115	33864593	rplT	SYNW0057	-	50S ribosomal protein L20
55	 61.62	0	53171..53368	-	65	33864594	rpmI	SYNW0058	-	50S ribosomal protein L35
56	 67.44	+1	53427..54974	+	515	33864595	-	SYNW0059	-	amidase enhancer
57	 63.19	0	54999..56321	+	440	33864596	-	SYNW0060	-	putative glycosyltransferase
58	 65.26	0	56384..58165	-	593	33864597	dnaX	SYNW0061	-	DNA polymerase, gamma and tau subunits
59	 62.91	0	58189..58827	-	212	33864598	-	SYNW0062	-	hypothetical protein
60	 62.22	0	58846..60195	-	449	33864599	clpX	SYNW0063	-	ATP-dependent protease ATP-binding subunit
61	 62.81	0	60277..60951	-	224	33864600	clpP2	SYNW0064	-	ATP-dependent Clp protease proteolytic subunit 2
62	 63.50	0	60995..62413	-	472	33864601	tig	SYNW0065	-	trigger factor
63	 63.83	0	62542..63600	+	352	33864602	asd	SYNW0066	-	aspartate-semialdehyde dehydrogenase
64	 64.14	0	63597..64505	+	302	33864603	dapA	SYNW0067	-	dihydrodipicolinate synthase
65	 62.59	0	64556..66592	+	678	33864604	-	SYNW0068	-	hypothetical protein
66	 62.68	0	66593..67519	-	308	33864605	-	SYNW0069	-	hypothetical protein
67	 67.44	+1	67497..69299	-	600	33864606	lysC	SYNW0070	-	aspartate kinase
68	 62.42	0	69352..69798	-	148	33864607	-	SYNW0071	-	hypothetical protein
69	 62.14	0	69779..70087	-	102	33864608	-	SYNW0072	-	hypothetical protein
70	 67.91	+1	70142..71107	-	321	33864609	-	SYNW0073	-	DNA polymerase III subunit delta
71	 68.74	+1	71117..71743	+	208	33864610	cobH	SYNW0074	-	putative precorrin-8X methylmutase CobH
72	 69.33	+1	71712..72761	-	349	33864611	-	SYNW0075	-	MesJ-like protein
73	 68.38	+1	72760..73518	+	252	33864612	-	SYNW0076	-	hypothetical protein
74	 61.70	0	73579..75612	+	677	33864613	uvrB	SYNW0077	-	excinuclease ABC subunit B
75	 66.85	+1	75609..78311	-	900	33864614	mutS	SYNW0078	-	DNA mismatch repair protein
76	 58.54	0	78348..79061	-	237	33864615	-	SYNW0079	-	hypothetical protein
77	 65.19	0	79065..79604	-	179	33864616	-	SYNW0080	-	hypothetical protein
78	 58.14	0	79539..79796	+	85	33864617	psbZ	SYNW0081	-	photosystem II reaction center protein Z
79	 53.00	-1	79853..80335	+	160	33864618	ribH	SYNW0082	-	riboflavin synthase subunit beta
80	 47.33	-2	80332..81060	+	242	33864619	-	SYNW0083	-	putative deacetylase sulfotransferase
81	 45.71	-2	81057..82268	+	403	33864620	-	SYNW0084	-	putative glycosyltransferase
82	 50.84	-1	82533..85040	-	835	33864621	swmA	SYNW0085	-	SwmA-cell surface protein required for swimming motility
83	 59.28	0	85592..88405	+	937	33864622	secA	SYNW0086	-	preprotein translocase subunit SecA
84	 54.68	0	88413..89363	+	316	33864623	-	SYNW0087	-	hypothetical protein
85	 58.74	0	89360..91012	+	550	33864624	-	SYNW0088	-	hypothetical protein
86	 61.39	0	91067..91843	+	258	33864625	-	SYNW0089	-	hypothetical protein
87	 62.92	0	91797..92543	-	248	33864626	cysE	SYNW0090	-	serine acetyltransferase
88	 64.27	0	92554..93555	-	333	33864627	-	SYNW0091	-	hypothetical protein
89	 62.98	0	93602..94387	+	261	33864628	-	SYNW0092	-	carboxymethylenebutenolidase
90	 61.31	0	94384..95037	-	217	33864629	infC	SYNW0093	-	translation initiation factor IF-3
91	 64.00	0	95094..95993	-	299	33864630	miaA	SYNW0094	-	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase
92	 56.66	0	96148..98115	+	655	33864631	gyrB	SYNW0095	-	DNA gyrase subunit B
93	 64.96	0	98115..98465	+	116	33864632	-	SYNW0096	-	hypothetical protein
94	 62.73	0	98446..98826	+	126	33864633	-	SYNW0097	-	hypothetical protein
95	 64.91	0	98819..99217	+	132	33864634	-	SYNW0098	-	hypothetical protein
96	 63.08	0	99183..99656	-	157	33864635	-	SYNW0099	-	glutathione peroxidase
97	 44.30	-2	99682..100593	-	303	33864636	-	SYNW0100	-	hypothetical protein
98	 62.35	0	100801..102261	+	486	33864637	-	SYNW0101	-	Mg2+ transporter
99	 58.86	0	102314..103312	+	332	33864638	-	SYNW0102	-	type II alternative sigma-70 family RNA polymerase sigma factor
100	 46.51	-2	103634..104506	+	290	33864639	-	SYNW0103	-	hypothetical protein
60.02	MEAN

6.10	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.