IslandPath Analysis: Mycobacterium gilvum PYR-GCK



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.01   STD DEV: 3.16
Mycobacterium gilvum PYR-GCK, complete genome - 1..5619607
5241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.10	0	292..1350	+	352	145220607	-	Mflv_0001	-	transposase IS116/IS110/IS902 family protein
2	 65.84	0	1382..1987	-	201	145220608	-	Mflv_0002	-	hypothetical protein
3	 67.28	0	1984..2793	-	269	145220609	-	Mflv_0003	-	hypothetical protein
4	 66.36	0	2793..3440	-	215	145220610	-	Mflv_0004	-	hypothetical protein
5	 68.75	0	3460..4710	-	416	145220611	-	Mflv_0005	-	virulence factor Mce family protein
6	 68.76	0	4710..5951	-	413	145220612	-	Mflv_0006	-	hypothetical protein
7	 66.31	0	5948..7066	-	372	145220613	-	Mflv_0007	-	virulence factor Mce family protein
8	 65.70	0	7063..8100	-	345	145220614	-	Mflv_0008	-	virulence factor Mce family protein
9	 64.58	-1	8093..9148	-	351	145220615	-	Mflv_0009	-	virulence factor Mce family protein
10	 70.02	0	9148..10785	-	545	145220616	-	Mflv_0010	-	hypothetical protein
11	 65.62	0	10786..11643	-	285	145220617	-	Mflv_0011	-	hypothetical protein
12	 68.05	0	11644..12582	-	312	145220618	-	Mflv_0012	-	hypothetical protein
13	 69.10	0	12770..14044	-	424	145220619	-	Mflv_0013	-	TetR family transcriptional regulator
14	 68.68	0	14231..14578	+	115	145220620	-	Mflv_0014	-	hypothetical protein
15	 67.27	0	14637..16280	+	547	145220621	-	Mflv_0015	-	acyl-CoA synthetase
16	 70.09	0	16371..17072	-	233	145220622	-	Mflv_0016	-	GntR domain-containing protein
17	 71.50	+1	17096..18316	+	406	145220623	-	Mflv_0017	-	major facilitator transporter
18	 69.38	0	18339..19589	+	416	145220624	-	Mflv_0018	-	hypothetical protein
19	 66.99	0	19599..20222	-	207	145220625	-	Mflv_0019	-	NodS family protein
20	 70.70	0	20219..20986	-	255	145220626	-	Mflv_0020	-	LmbE family protein
21	 73.67	+1	20983..21924	-	313	145220627	-	Mflv_0021	-	dehydrogenase
22	 69.08	0	21921..22625	-	234	145220628	-	Mflv_0022	-	glycosyl transferase family protein
23	 68.56	0	22686..23372	+	228	145220629	-	Mflv_0023	-	HAD family hydrolase
24	 67.43	0	23440..23832	+	130	145220630	-	Mflv_0024	-	hypothetical protein
25	 68.42	0	23836..24747	+	303	145220631	-	Mflv_0025	-	naphthoate synthase
26	 70.62	0	24763..25722	+	319	145220632	-	Mflv_0026	-	short chain dehydrogenase
27	 68.95	0	25729..27258	+	509	145220633	-	Mflv_0027	-	AMP-dependent synthetase and ligase
28	 69.01	0	27282..27665	+	127	145220634	-	Mflv_0028	-	glyoxalase/bleomycin resistance protein/dioxygenase
29	 67.67	0	27662..27961	-	99	145220635	-	Mflv_0029	-	hypothetical protein
30	 66.32	0	27972..28259	-	95	145220636	-	Mflv_0030	-	hypothetical protein
31	 68.70	0	28276..29601	-	441	145220637	-	Mflv_0031	-	phosphate transporter
32	 69.18	0	29760..30077	+	105	145220638	-	Mflv_0032	-	hypothetical protein
33	 73.11	+1	30134..31219	+	361	145220639	-	Mflv_0033	-	O-succinylbenzoic acid--CoA ligase
34	 69.59	0	31263..31877	+	204	145220640	-	Mflv_0034	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
35	 69.06	0	31941..32651	+	236	145220641	-	Mflv_0035	-	two component transcriptional regulator
36	 70.87	0	32638..33660	+	340	145220642	-	Mflv_0036	-	integral membrane sensor signal transduction histidine kinase
37	 70.62	0	33741..34877	-	378	145220643	-	Mflv_0037	-	2-nitropropane dioxygenase, NPD
38	 71.38	+1	35209..36078	+	289	145220644	-	Mflv_0038	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
39	 69.76	0	36123..37124	+	333	145220645	-	Mflv_0039	-	ATPase
40	 68.99	0	37138..37998	+	286	145220646	-	Mflv_0040	-	hypothetical protein
41	 69.83	0	37988..38461	+	157	145220647	-	Mflv_0041	-	hypothetical protein
42	 72.10	+1	38452..39408	+	318	145220648	-	Mflv_0042	-	hypothetical protein
43	 70.27	0	39405..40319	+	304	145220649	-	Mflv_0043	-	hypothetical protein
44	 72.29	+1	40316..41026	+	236	145220650	-	Mflv_0044	-	hypothetical protein
45	 68.37	0	41023..41433	-	136	145220651	-	Mflv_0045	-	hypothetical protein
46	 68.71	0	41498..41839	-	113	145220652	-	Mflv_0046	-	hypothetical protein
47	 65.45	0	41889..42053	+	54	145220653	-	Mflv_0047	-	hypothetical protein
48	 70.32	0	42079..43173	-	364	145220654	-	Mflv_0048	-	hypothetical protein
49	 66.46	0	43177..44151	-	324	145220655	-	Mflv_0049	-	cytochrome c assembly protein
50	 68.00	0	44148..45797	-	549	145220656	-	Mflv_0050	-	ResB family protein
51	 70.10	0	45797..46582	-	261	145220657	-	Mflv_0051	-	cytochrome c biogenesis protein, transmembrane region
52	 68.66	0	46579..47181	-	200	145220658	-	Mflv_0052	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
53	 68.55	0	47178..47813	-	211	145220659	-	Mflv_0053	-	phosphoglycerate mutase
54	 71.29	+1	47810..49108	-	432	145220660	-	Mflv_0054	-	glutamate-1-semialdehyde aminotransferase
55	 68.54	0	49195..50580	-	461	145220661	-	Mflv_0055	-	permease for cytosine/purines, uracil, thiamine, allantoin
56	 71.22	+1	50785..52146	-	453	145220662	-	Mflv_0056	-	cytochrome P450
57	 67.24	0	52130..52648	-	172	145220663	-	Mflv_0057	-	hypothetical protein
58	 63.39	-1	52680..53015	-	111	145220664	-	Mflv_0058	-	hypothetical protein
59	 68.01	0	53058..53651	-	197	145220665	-	Mflv_0059	-	TetR family transcriptional regulator
60	 66.34	0	53638..54546	-	302	145220666	-	Mflv_0060	-	hypothetical protein
61	 74.51	+2	54660..54914	-	84	145220667	-	Mflv_0061	-	putative transmembrane protein
62	 70.35	0	54911..55399	-	162	145220668	-	Mflv_0062	-	putative transmembrane protein
63	 70.49	0	55396..55866	-	156	145220669	-	Mflv_0063	-	hypothetical protein
64	 69.32	0	56297..57277	-	326	145220670	-	Mflv_0064	-	delta-aminolevulinic acid dehydratase
65	 71.29	+1	57366..59075	-	569	145220671	-	Mflv_0065	-	uroporphyrinogen III synthase HEM4
66	 67.84	0	59072..60010	-	312	145220672	hemC	Mflv_0066	-	porphobilinogen deaminase
67	 69.44	0	60036..61403	-	455	145220673	hemA	Mflv_0067	-	glutamyl-tRNA reductase
68	 72.16	+1	61548..61802	-	84	145220674	-	Mflv_0068	-	glutaredoxin 2
69	 72.41	+1	61842..62729	+	295	145220675	-	Mflv_0069	-	HAD family hydrolase
70	 65.57	0	62780..63328	+	182	145220676	-	Mflv_0070	-	MaoC-like dehydratase
71	 68.16	0	63358..64428	-	356	145220677	-	Mflv_0071	-	phospholipid/glycerol acyltransferase
72	 68.12	0	64479..65579	-	366	145220678	-	Mflv_0072	-	NAD-dependent epimerase/dehydratase
73	 55.88	-2	65611..65712	-	33	145220679	-	Mflv_0073	-	hypothetical protein
74	 67.77	0	65861..66133	-	90	145220680	-	Mflv_0074	-	DNA binding domain-containing protein
75	 69.73	0	66271..67152	-	293	145220681	-	Mflv_0075	-	pyrroline-5-carboxylate reductase
76	 68.76	0	67186..67998	-	270	145220682	-	Mflv_0076	-	hypothetical protein
77	 70.33	0	68023..68868	-	281	145220683	-	Mflv_0077	-	xylose isomerase domain-containing protein
78	 68.97	0	68896..70197	-	433	145220684	-	Mflv_0078	-	hypothetical protein
79	 68.70	0	70238..71269	-	343	145220685	-	Mflv_0079	-	Ppx/GppA phosphatase
80	 66.04	0	71294..72085	+	263	145220686	-	Mflv_0080	-	hypothetical protein
81	 67.31	0	72082..72390	+	102	145220687	-	Mflv_0081	-	YCII-related
82	 66.38	0	72472..73158	-	228	145220688	-	Mflv_0082	-	two component transcriptional regulator
83	 68.49	0	73166..74374	-	402	145220689	-	Mflv_0083	-	histidine kinase
84	 67.60	0	74514..75266	-	250	145220690	-	Mflv_0084	-	phosphoglycerate mutase 1 family protein
85	 66.67	0	75291..75800	-	169	145220691	-	Mflv_0085	-	hypothetical protein
86	 71.18	+1	75797..77125	-	442	145220692	-	Mflv_0086	-	glycosyl transferase, group 1
87	 74.30	+1	77136..78458	-	440	145220693	-	Mflv_0087	-	ROK family protein
88	 69.30	0	78682..79440	+	252	145220694	-	Mflv_0088	-	short-chain dehydrogenase/reductase SDR
89	 69.98	0	79537..80835	-	432	145220695	-	Mflv_0089	-	ErfK/YbiS/YcfS/YnhG family protein
90	 71.14	0	80851..81900	-	349	145220696	murB	Mflv_0090	-	UDP-N-acetylenolpyruvoylglucosamine reductase
91	 68.20	0	81926..82447	+	173	145220697	-	Mflv_0091	-	hypothetical protein
92	 71.45	+1	82469..83263	+	264	145220698	-	Mflv_0092	-	hypothetical protein
93	 67.19	0	83256..84773	-	505	145220699	-	Mflv_0093	-	Na+/solute symporter
94	 66.93	0	85120..86268	+	382	145220700	-	Mflv_0094	-	arginase/agmatinase/formiminoglutamase
95	 70.60	0	86282..87121	+	279	145220701	-	Mflv_0095	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
96	 67.13	0	87118..87975	+	285	145220702	-	Mflv_0096	-	hypothetical protein
97	 73.89	+1	87972..88649	-	225	145220703	-	Mflv_0097	-	deoxyribose-phosphate aldolase
98	 71.78	+1	88649..89059	-	136	145220704	-	Mflv_0098	-	hypothetical protein
99	 64.83	-1	89059..89385	-	108	145220705	-	Mflv_0099	-	hypothetical protein
100	 71.19	+1	89403..90065	-	220	145220706	-	Mflv_0100	-	hypothetical protein
68.01	MEAN

3.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.