IslandPath Analysis: Francisella tularensis subsp. tularensis FSC198



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.63   STD DEV: 3.37
Francisella tularensis subsp. tularensis FSC198, complete genome - 1..1892616
1605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.90	0	1..1521	+	506	110669658	dnaA	FTF0001	-	chromosomal replication initiator protein dnaA
2	 27.90	-1	1558..2661	+	367	110669659	dnaN	FTF0002	-	DNA polymerase III, beta chain
3	 32.36	0	3204..3988	-	261	110669660	isftu1	FTF0004c	-	transposase
4	 34.08	0	4661..5869	+	402	110669661	-	FTF0006	-	MFS superfamily proline/ betaine transporter
5	 35.02	0	6044..7822	+	592	110669662	aspS	FTF0007	-	aspartyl-tRNA synthetase
6	 30.27	0	11450..12232	-	260	110669663	-	FTF0013c	-	lipoprotein
7	 33.33	0	12472..12870	-	132	110669664	-	FTF0014c	-	hypothetical protein
8	 35.72	0	13198..14496	+	432	110669665	purB	FTF0015	-	adenylosuccinate lyase
9	 30.92	0	14530..15108	+	192	110669666	-	FTF0016	-	hypothetical protein
10	 29.25	-1	15195..16736	+	513	110669667	-	FTF0017	-	hypothetical protein
11	 36.87	+1	16744..17817	+	357	110669668	-	FTF0018	-	secretion protein
12	 31.91	0	17900..18181	+	93	110669669	gatC	FTF0019	-	Glu-tRNAGln amidotransferase C subunit
13	 37.55	+1	18190..19635	+	481	110669670	gatA	FTF0020	-	glutamyl-tRNA(Gln) amidotransferase subunit A
14	 36.78	+1	19638..21059	+	473	110669671	gatB	FTF0021	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
15	 30.39	0	21074..21481	+	135	110669672	-	FTF0022	-	hypothetical protein
16	 32.54	0	21497..22378	-	293	110669673	-	FTF0023c	-	lipase/acyltransferase
17	 27.25	-1	22646..22990	-	114	110669674	-	FTF0024c	-	hypothetical protein
18	 33.99	0	23038..24567	-	509	110669675	-	FTF0025c	-	hypothetical protein
19	 34.01	0	24652..25842	-	396	110669676	-	FTF0026c	-	hypothetical protein
20	 32.85	0	25858..27111	-	417	110669677	lysA1	FTF0027c	-	diaminopimelate decarboxylase
21	 31.04	0	27104..28366	-	420	110669678	-	FTF0028c	-	hypothetical protein
22	 32.50	0	28373..30292	-	639	110669679	-	FTF0029c	-	hypothetical protein
23	 32.86	0	30545..30967	-	140	110669680	fur	FTF0030c	-	ferric uptake regulation protein
24	 36.34	+1	31176..31574	+	132	110669681	nuoA	FTF0031	-	NADH dehydrogenase I, A subunit
25	 43.61	+2	31565..32041	+	158	110669682	nuoB	FTF0032	-	NADH dehydrogenase subunit B
26	 36.71	+1	32038..32688	+	216	110669683	nuoC	FTF0033	-	NADH dehydrogenase I
27	 38.76	+1	32710..33963	+	417	110669684	nuoD	FTF0034	-	NADH dehydrogenase subunit D
28	 36.20	+1	33973..34461	+	162	110669685	nuoE	FTF0035	-	NADH dehydrogenase I, E subunit
29	 40.39	+2	34468..35742	+	424	110669686	nuoF	FTF0036	-	NADH dehydrogenase I, F subunit
30	 36.50	+1	35760..38126	+	788	110669687	nuoG	FTF0037	-	NADH dehydrogenase subunit G
31	 36.60	+1	38128..39138	+	336	110669688	nuoH	FTF0038	-	NADH dehydrogenase I, H subunit
32	 34.97	0	39152..39640	+	162	110669689	nuoI	FTF0039	-	NADH dehydrogenase subunit I
33	 34.98	0	39645..40250	+	201	110669690	nuoJ	FTF0040	-	NADH dehydrogenase I, J subunit
34	 33.03	0	40228..40560	+	110	110669691	nuoK	FTF0041	-	NADH dehydrogenase I, K subunit
35	 34.98	0	40570..42579	+	669	110669692	nuoL	FTF0042	-	NADH dehydrogenase I, L subunit
36	 36.35	+1	42605..44194	+	529	110669693	nuoM	FTF0043	-	NADH dehydrogenase I, M subunit
37	 35.46	0	44204..45661	+	485	110669694	nuoN	FTF0044	-	NADH dehydrogenase I, N subunit
38	 30.77	0	45737..45931	+	64	110669695	-	FTF0045	-	hypothetical protein
39	 35.75	0	47478..48512	+	344	110669696	hemE	FTF0047	-	uroporphyrinogen decarboxylase
40	 35.29	0	48732..49190	+	152	110669697	-	FTF0048	-	hypothetical protein
41	 34.35	0	49208..50677	+	489	110669698	nusA	FTF0049	-	transcription elongation factor NusA
42	 37.98	+1	50716..53256	+	846	110669699	infB	FTF0050	-	translation initiation factor IF-2
43	 32.41	0	53259..53690	+	143	110669700	rbfA	FTF0051	-	ribosome-binding factor A
44	 34.68	0	53698..54963	+	421	110669701	hisS	FTF0052	-	histidyl-tRNA synthetase
45	 34.03	0	54970..56268	+	432	110669702	-	FTF0053	-	major facilitator transporter
46	 29.59	0	56271..57338	+	355	110669703	-	FTF0054	-	ATPase
47	 34.19	0	57331..58260	+	309	110669704	rluC	FTF0055	-	ribosomal large subunit pseudouridine synthase C
48	 35.10	0	58262..59566	-	434	110669705	-	FTF0056c	-	major facilitator transporter
49	 26.85	-1	59643..60074	+	143	110669706	-	FTF0057	-	hypothetical protein
50	 37.12	+1	60127..60918	+	263	110669707	atpB	FTF0058	-	F0F1 ATP synthase subunit A
51	 41.18	+2	60969..61274	+	101	110669708	atpE	FTF0059	-	F0F1 ATP synthase subunit C
52	 37.79	+1	61320..61790	+	156	110669709	atpF	FTF0060	-	F0F1 ATP synthase subunit B
53	 32.57	0	61810..62334	+	174	110669710	atpH	FTF0061	-	F0F1 ATP synthase subunit delta
54	 38.59	+1	62353..63894	+	513	110669711	atpA	FTF0062	-	F0F1 ATP synthase subunit alpha
55	 34.89	0	63909..64805	+	298	110669712	atpG	FTF0063	-	F0F1 ATP synthase subunit gamma
56	 38.78	+1	64815..66191	+	458	110669713	atpD	FTF0064	-	F0F1 ATP synthase subunit beta
57	 38.36	+1	66204..66641	+	145	110669714	atpC	FTF0065	-	F0F1 ATP synthase subunit epsilon
58	 31.89	0	66852..69695	+	947	110669715	-	FTF0066	-	hypothetical protein
59	 35.15	0	69712..70041	-	109	110669716	-	FTF0067c	-	glutaredoxin-like protein
60	 33.85	0	70177..70755	+	192	110669717	sodB	FTF0068	-	superoxide dismutase
61	 29.03	-1	70763..70948	-	61	110669718	-	FTF0069c	-	hypothetical protein
62	 32.78	0	70960..72225	-	421	110669719	ampG	FTF0070c	-	major facilitator superfamily tranporter
63	 36.47	+1	72314..73588	-	424	110669720	gltA	FTF0071c	-	citrate synthase
64	 35.02	0	73831..74304	+	157	110669721	sdhC	FTF0072	-	succinate dehydrogenase, cytochrome b556
65	 34.96	0	74280..74648	+	122	110669722	sdhD	FTF0073	-	succinate dehydrogenase hydrophobic membrane anchor protein
66	 39.97	+2	74661..76454	+	597	110669723	sdhA	FTF0074	-	succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
67	 36.18	+1	76472..77173	+	233	110669724	sdhB	FTF0075	-	succinate dehydrogenase iron-sulfur subunit
68	 36.27	+1	77191..80016	+	941	110669725	kgd	FTF0076	-	alpha-ketoglutarate decarboxylase
69	 37.96	+1	80042..81511	+	489	110669726	sucB	FTF0077	-	dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex
70	 39.02	+1	81551..82078	+	175	110669727	apt	FTF0078	-	adenine phosphoribosyltransferase
71	 34.68	0	82089..83420	+	443	110669728	mrsA	FTF0079	-	phosphoglucosamine mutase
72	 34.65	0	83423..84184	+	253	110669729	tpiA	FTF0080	-	triosephosphate isomerase
73	 38.98	+1	84172..84525	+	117	110669730	secG	FTF0081	-	preprotein translocase subunit SecG
74	 33.12	0	85736..86212	+	158	110669731	-	FTF0083	-	hypothetical protein
75	 30.62	0	86209..87351	-	380	110669732	hemN	FTF0084c	-	oxygen-independent coproporphyrinogen III oxidase
76	 27.25	-1	87356..87733	-	125	110669733	-	FTF0085c	-	hypothetical protein
77	 31.40	0	87803..88681	+	292	110669734	-	FTF0086	-	hypothetical protein
78	 37.28	+1	88786..91599	+	937	110669735	acnA	FTF0087	-	aconitate hydratase
79	 36.05	+1	91694..92722	+	342	110669736	pilT	FTF0088	-	Type IV pili nucleotide-binding protein
80	 25.50	-2	93784..94230	-	148	110669737	-	FTF0090c	-	hypothetical protein
81	 30.74	0	94241..95203	-	320	110669738	appB	FTF0091c	-	cytochrome oxidase bd-II, subunit II
82	 32.77	0	96819..97700	+	293	110669739	-	FTF0093	-	hypothetical protein
83	 31.65	0	97697..99124	-	475	110669740	qseC	FTF0094c	-	sensor histidine kinase
84	 33.54	0	99240..100196	+	318	110669741	-	FTF0095	-	hypothetical protein
85	 34.20	0	100438..101478	+	346	110669742	-	FTF0096	-	hypothetical protein
86	 31.14	0	101612..102157	+	181	110669743	-	FTF0097	-	hypothetical protein
87	 32.36	0	102231..103015	-	261	110669744	isftu1	FTF0098c	-	transposase
88	 29.03	-1	103117..103860	+	247	110669745	isftu2	FTF0099	-	transposase
89	 27.12	-1	104530..105543	+	337	110669746	-	FTF0101	-	hypothetical protein
90	 28.01	-1	106988..107569	-	193	110669747	-	FTF0103c	-	hypothetical protein
91	 34.82	0	107814..109091	-	425	110669748	-	FTF0104c	-	major facilitator transporter
92	 35.81	0	109223..112336	-	1037	110669749	-	FTF0105c	-	AcrB/AcrD/AcrF family transporter
93	 33.48	0	112336..113709	-	457	110669750	-	FTF0106c	-	RND efflux transporter
94	 28.86	-1	113722..114213	-	163	110669751	dsbB	FTF0107c	-	disulfide bond formation protein
95	 32.59	0	114253..115335	-	360	110669752	cca	FTF0108c	-	tRNA CCA-pyrophosphorylase
96	 34.43	0	115440..117269	+	609	110669753	msbA	FTF0109	-	Lipid A transport protein, ABC transporter,ATP-binding and membrane protein
97	 32.61	0	117275..118243	+	322	110669754	lpxK	FTF0110	-	tetraacyldisaccharide 4'-kinase
98	 35.00	0	118339..121032	+	897	110669755	polA	FTF0111	-	DNA polymerase I
99	 34.62	0	121052..121828	+	258	110669756	-	FTF0112	-	pantothenate kinase
100	 36.63	+1	121833..123077	+	414	110669757	deoB	FTF0113	-	phosphopentomutase
32.63	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.