IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.89   STD DEV: 4.45
Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence - 1..943016
835 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.29	0	5736..6824	-	362	77464989	-	RSP_3806	-	hypothetical protein
2	 60.28	-1	6828..7109	-	93	77464990	-	RSP_3807	-	hypothetical protein
3	 65.35	0	7172..8008	-	278	77464991	-	RSP_3808	-	hypothetical protein
4	 57.61	-2	8443..8751	-	102	77464992	-	RSP_3809	-	hypothetical protein
5	 65.10	0	8756..9010	-	84	77464993	-	RSP_3810	-	hypothetical protein
6	 66.98	0	9093..9416	-	107	77464994	-	RSP_3811	-	hypothetical protein
7	 65.46	0	9737..11308	+	523	77464995	-	RSP_3812	-	recombinase
8	 64.91	0	11308..12216	+	302	77464996	parB	RSP_3813	-	ParB-like nuclease
9	 63.83	-1	12213..13130	+	305	77464997	-	RSP_3814	-	hypothetical protein
10	 54.11	-2	13770..14000	+	76	77464998	-	RSP_3816	-	hypothetical protein
11	 68.23	0	15252..16148	+	298	77464999	-	RSP_6232	-	hypothetical protein
12	 68.69	0	16436..16831	+	131	77465000	rplU	RSP_3819	-	50S ribosomal protein L21P
13	 68.15	0	16838..17107	+	89	77465001	rpmA	RSP_3820	-	50S ribosomal protein L27
14	 70.28	0	17201..17809	+	202	77465002	-	RSP_3821	-	putative acetyltransferase
15	 68.80	0	17904..18932	+	342	77465003	obgE	RSP_3822	-	GTPase ObgE
16	 71.25	0	18932..20044	+	370	77465004	proB1	RSP_3823	-	gamma-glutamyl kinase
17	 70.23	0	20095..21357	+	420	77465005	proA	RSP_3824	-	glutamate-5-semialdehyde dehydrogenase
18	 66.67	0	21361..21957	-	198	77465006	-	RSP_3825	-	hypothetical protein
19	 58.33	-2	21991..22170	+	59	77465007	-	RSP_6239	-	hypothetical protein
20	 69.97	0	22338..23123	+	261	77465008	-	RSP_3826	-	ornithine-acyl[acyl carrier protein] N-acyltransferase
21	 70.18	0	23204..23944	+	246	77465009	-	RSP_3827	-	lyso-ornithine lipid acyltransferase
22	 71.66	0	23965..24585	-	206	77465010	-	RSP_3828	-	putative thiamine-phosphate pyrophosphorylase
23	 69.13	0	24699..25430	+	243	77465011	-	RSP_3829	-	tRNA/rRNA methyltransferase (SpoU)
24	 69.84	0	25513..25827	+	104	77465012	-	RSP_3830	-	hypothetical protein
25	 69.39	0	25912..27087	+	391	77465013	cox15	RSP_3831	-	putative cytochrome oxidase assembly factor
26	 69.30	0	27084..28565	+	493	77465014	cxp	RSP_3832	-	carboxypeptidase
27	 71.88	0	29437..30222	-	261	77465015	fadB	RSP_3833	-	enoyl-CoA hydratase
28	 71.13	0	30279..30704	+	141	77465016	-	RSP_3834	-	hypothetical protein
29	 69.72	0	30711..31070	-	119	77465017	-	RSP_3835	-	hypothetical protein
30	 73.74	+1	31225..31521	+	98	77465018	-	RSP_6211	-	hypothetical protein
31	 72.41	0	31518..33170	+	550	77465019	-	RSP_3836	-	putative metal-dependent hydrolase
32	 56.03	-2	33315..33596	-	93	77465020	-	RSP_3837	-	hypothetical protein
33	 46.80	-2	39397..39693	+	98	77465021	-	RSP_3003	-	hypothetical protein
34	 55.83	-2	39958..40566	+	202	77465022	-	RSP_3004	-	protein kinase
35	 51.58	-2	40724..41167	-	147	77465023	-	RSP_3005	-	hypothetical protein
36	 55.46	-2	41397..42065	+	222	77465024	-	RSP_3006	-	hypothetical protein
37	 64.26	-1	42204..42785	-	193	77465025	-	RSP_3007	-	hypothetical protein
38	 67.40	0	44920..45330	-	136	77465026	-	RSP_3012	-	transposase
39	 68.79	0	46296..47048	-	250	77465027	-	RSP_3014	-	putative aldolase protein
40	 65.80	0	47048..47968	-	306	77465028	-	RSP_3015	-	3-keto-5-aminohexanoate cleavage enzyme
41	 69.10	0	48026..48889	-	287	77465029	-	RSP_3016	-	phenol degradation enzyme
42	 68.21	0	48926..49444	-	172	77465030	-	RSP_3017	-	nitrilotriacetate monooxygenase
43	 65.90	0	49518..50690	-	390	77465031	-	RSP_3018	-	putative acyl-CoA dehydrogenase
44	 72.15	0	50714..51388	-	224	77465032	-	RSP_3019	-	putative hydrolase
45	 72.19	0	51385..51855	-	156	77465033	-	RSP_3020	-	hypothetical protein
46	 66.78	0	51852..52766	-	304	77465034	-	RSP_3021	-	putative catechol 2,3-dioxygenase
47	 65.67	0	53250..53951	+	233	77465035	-	RSP_3022	-	TetR family transcriptional regulator
48	 66.56	0	53953..54858	-	301	77465036	-	RSP_3023	-	hypothetical protein
49	 69.17	0	55010..55609	+	199	77465037	-	RSP_3025	-	NAD(P)H oxidoreductase
50	 66.91	0	55582..56418	-	278	77465038	-	RSP_3024	-	DNA-binding transcriptional activator MhpR
51	 71.92	0	57004..58374	-	456	77465039	-	RSP_3026	-	GntR family transcriptional regulator
52	 67.73	0	58502..59911	-	469	77465040	rdxA	RSP_3027	-	RdxA, iron-sulfur cluster-binding protein
53	 66.01	0	60315..61538	+	407	77465041	hemT	RSP_3028	-	5-aminolevulinate synthase
54	 69.52	0	61910..62611	-	233	77465042	-	RSP_3029	-	GntR family transcriptional regulator
55	 68.47	0	62785..63729	+	314	77465043	-	RSP_3030	-	ABC peptide/opine transporter, inner membrane subunit
56	 69.69	0	63731..64624	+	297	77465044	-	RSP_3031	-	ABC peptide/opine transporter, inner membrane subunit
57	 71.30	0	64621..65592	+	323	77465045	-	RSP_3032	-	ABC peptide/opine transporter, ATPase subunit
58	 71.56	0	65589..66590	+	333	77465046	-	RSP_3033	-	ABC peptide/opine transporter, ATPase subunit
59	 67.24	0	66628..68187	+	519	77465047	-	RSP_3034	-	ABC peptide/opine transporter, periplasmic substrate-binding protein
60	 69.56	0	68309..69586	+	425	77465048	-	RSP_3035	-	MFS family transporter
61	 67.81	0	69625..71628	+	667	77465049	-	RSP_3036	-	hypothetical protein
62	 69.70	0	71772..72530	-	252	77465050	-	RSP_3037	-	putative short-chain dehydrogenase/reductase
63	 66.79	0	72551..73354	-	267	77465051	-	RSP_3038	-	ABC permidine/putrescine transporter, inner membrane subunit
64	 66.78	0	73363..74214	-	283	77465052	-	RSP_3039	-	ABC permidine/putrescine transporter, inner membrane subunit
65	 66.58	0	74227..75384	-	385	77465053	-	RSP_3040	-	ABC permidine/putrescine transporter, periplasmic substrate-binding protein
66	 69.13	0	75444..76541	-	365	77465054	-	RSP_3041	-	ABC permidine/putrescine transporter, ATPase subunit
67	 64.73	0	76617..77390	+	257	77465055	dorX	RSP_3042	-	LuxR family transcriptional regulator
68	 75.51	+1	77446..77592	+	48	77465056	dorY	RSP_6160	-	DMSO reductase regulatory protein DorY
69	 67.37	0	77673..78239	+	188	77465057	-	RSP_3043	-	hypothetical protein
70	 68.43	0	78236..80677	+	813	77465058	dorS	RSP_3044	-	DMSO/TMAO-sensor hybrid histidine kinase
71	 66.09	0	80695..81393	-	232	77465059	dorR	RSP_3045	-	two component transcriptional regulator
72	 64.46	0	81663..82841	+	392	77465060	dorC	RSP_3046	-	DMSO/TMAO pentaheme cytochrome c subunit
73	 73.13	0	82838..83518	+	226	77465061	dorB	RSP_3047	-	DMSO-membrane protein
74	 66.75	0	83515..85983	+	822	77465062	dorA	RSP_3048	-	DMSO/TMAO-reductase
75	 75.99	+1	86114..87346	+	410	77465063	moeA	RSP_3049	-	molybdenum cofactor biosynthesis protein
76	 69.52	0	87403..88419	+	338	77465064	moaA	RSP_3050	-	molybdenum cofactor biosynthesis protein A
77	 68.74	0	88598..90577	+	659	77465065	-	RSP_3051	-	putative phosphatase
78	 72.13	0	90873..91751	-	292	77465066	-	RSP_3052	-	LysR family transcriptional regulator
79	 72.26	0	91912..92841	+	309	77465067	-	RSP_3053	-	dioxygenase/glyoxalase family protein
80	 75.24	+1	93178..93795	+	205	77465068	-	RSP_3054	-	hypothetical protein
81	 72.28	0	93910..94194	-	94	77465069	-	RSP_6161	-	hypothetical protein
82	 69.43	0	94475..94945	+	156	77465070	-	RSP_3055	-	MarR family transcriptional regulator
83	 68.27	0	94964..96898	-	644	77465071	-	RSP_3056	-	TonB dependent-iron siderophore receptor
84	 69.69	0	97408..98499	-	363	77465072	-	RSP_3057	-	ABC proline/glycine betaine transporter, ATPase subunit
85	 66.89	0	98492..99403	-	303	77465073	-	RSP_3058	-	ABC proline/glycine betaine transporter, inner membrane subunit
86	 68.86	0	99471..100472	-	333	77465074	-	RSP_3059	-	ABC proline/glycine betaine transporter, periplasmic substrate-binding protein
87	 69.66	0	101473..102006	+	177	77465075	cysE	RSP_3060	-	O-acetylserine synthase
88	 69.55	0	102033..102344	+	103	77465076	-	RSP_3061	-	hypothetical protein
89	 69.11	0	102341..103036	+	231	77465077	fabG	RSP_3062	-	3-oxoacyl-(acyl-carrier-protein) reductase
90	 73.30	0	103038..104378	+	446	77465078	-	RSP_3063	-	AMP-dependent synthetase and ligase
91	 73.44	+1	104527..105309	+	260	77465079	-	RSP_3064	-	DeoR family transcriptional regulator
92	 73.81	+1	105579..106712	+	377	77465080	-	RSP_3065	-	MFS family transporter
93	 72.31	0	106851..108143	+	430	77465081	-	RSP_3067	-	hypothetical protein
94	 73.03	0	108140..108862	+	240	77465082	-	RSP_3068	-	hypothetical protein
95	 71.51	0	109061..109618	-	185	77465083	-	RSP_3069	-	NADPH-dependent FMN reductase
96	 75.08	+1	110019..111290	+	423	77465084	-	RSP_3071	-	putative hydroxypyruvate reductase/glycerate kinase
97	 71.88	0	111259..112293	-	344	77465085	-	RSP_3070	-	hypothetical protein
98	 71.47	0	112532..113821	-	429	77465086	sndh	RSP_3072	-	putative L-sorbosone dehydrogenase
99	 66.85	0	114199..114750	+	183	77465087	-	RSP_3073	-	ErfK/YbiS/YcfS/YnhG family protein
100	 69.44	0	115149..116987	-	612	77465088	ilvD	RSP_3074	-	dihydroxy-acid dehydratase
68.89	MEAN

4.45	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.