IslandPath Analysis: Burkholderia vietnamiensis G4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.18   STD DEV: 5.21
Burkholderia vietnamiensis G4 chromosome 3, complete sequence - 1..1241007
1114 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 74.56	+1	199..1908	+	569	134290885	-	Bcep1808_5455	-	Glycerone kinase
2	 69.48	0	2325..3710	+	461	134290886	-	Bcep1808_5456	-	general substrate transporter
3	 69.02	0	4039..5739	-	566	134290887	-	Bcep1808_5457	-	methyl-accepting chemotaxis sensory transducer
4	 67.17	0	5980..7374	-	464	134290888	-	Bcep1808_5458	-	hypothetical protein
5	 70.32	0	7406..8884	-	492	134290889	-	Bcep1808_5459	-	succinate semialdehyde dehydrogenase
6	 65.39	0	9008..9478	-	156	134290890	-	Bcep1808_5460	-	AsnC family transcriptional regulator
7	 69.46	0	9492..10529	-	345	134290891	-	Bcep1808_5461	-	succinylglutamate desuccinylase/aspartoacylase
8	 67.99	0	10534..11742	-	402	134290892	-	Bcep1808_5462	-	creatinase
9	 72.04	+1	11753..12757	-	334	134290893	-	Bcep1808_5463	-	ornithine cyclodeaminase
10	 70.99	0	12759..13730	-	323	134290894	-	Bcep1808_5464	-	threonine dehydratase
11	 69.36	0	13871..15283	-	470	134290895	-	Bcep1808_5465	-	GntR family transcriptional regulator
12	 71.88	+1	15649..16128	+	159	134290896	-	Bcep1808_5466	-	MarR family transcriptional regulator
13	 70.72	0	16125..18269	+	714	134290897	-	Bcep1808_5467	-	fusaric acid resistance protein region
14	 59.15	-1	18304..18516	+	70	134290898	-	Bcep1808_5468	-	hypothetical protein
15	 68.16	0	18519..19457	+	312	134290899	-	Bcep1808_5469	-	RND family efflux transporter MFP subunit
16	 70.90	0	19454..20965	+	503	134290900	-	Bcep1808_5470	-	Fis family transcriptional regulator
17	 65.49	0	21164..21589	+	141	134290901	-	Bcep1808_5471	-	TOBE domain-containing protein
18	 67.23	0	21889..22950	-	353	134290902	-	Bcep1808_5472	-	hypothetical protein
19	 66.32	0	23053..23337	+	94	134290903	-	Bcep1808_5473	-	hypothetical protein
20	 68.22	0	23444..23830	-	128	134290904	-	Bcep1808_5474	-	hypothetical protein
21	 68.31	0	23837..24505	-	222	134290905	-	Bcep1808_5475	-	ProQ activator of osmoprotectant transporter ProP
22	 60.66	-1	24593..25291	+	232	134290906	-	Bcep1808_5476	-	hypothetical protein
23	 64.02	0	25301..25792	-	163	134290907	-	Bcep1808_5477	-	flavodoxin/nitric oxide synthase
24	 63.61	0	25920..26573	-	217	134290908	-	Bcep1808_5478	-	TetR family transcriptional regulator
25	 62.04	0	26658..27782	+	374	134290909	-	Bcep1808_5479	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
26	 54.58	-2	28832..29071	-	79	134290910	-	Bcep1808_5480	-	hypothetical protein
27	 55.17	-2	29224..29919	+	231	134290911	-	Bcep1808_5481	-	cobyrinic acid a,c-diamide synthase
28	 61.34	0	29912..30943	+	343	134290912	-	Bcep1808_5482	-	ParB family protein
29	 59.76	-1	31033..32349	-	438	134290913	-	Bcep1808_5483	-	hypothetical protein
30	 52.56	-2	32453..32764	+	103	134290914	-	Bcep1808_5484	-	hypothetical protein
31	 68.75	0	34299..35354	-	351	134290915	-	Bcep1808_5485	-	integrase catalytic subunit
32	 63.91	0	35854..36180	+	108	134290916	-	Bcep1808_5486	-	hypothetical protein
33	 66.56	0	36371..37285	-	304	134290917	-	Bcep1808_5487	-	LysR family transcriptional regulator
34	 68.83	0	37425..38720	+	431	134290918	-	Bcep1808_5488	-	adenylosuccinate synthetase
35	 64.86	0	38965..39906	+	313	134290919	-	Bcep1808_5489	-	LysR family transcriptional regulator
36	 62.71	0	40217..40924	-	235	134290920	-	Bcep1808_5490	-	carboxymethylenebutenolidase
37	 62.82	0	41187..41498	-	103	134290921	-	Bcep1808_5491	-	hypothetical protein
38	 63.16	0	42376..42831	+	151	134290922	-	Bcep1808_5492	-	hypothetical protein
39	 64.38	0	42828..43307	+	159	134290923	-	Bcep1808_5493	-	hypothetical protein
40	 67.31	0	43342..44280	-	312	134290924	-	Bcep1808_5494	-	phage integrase family protein
41	 71.48	+1	44669..45208	+	179	134290925	-	Bcep1808_5495	-	hypothetical protein
42	 67.70	0	45512..45802	-	96	134290926	-	Bcep1808_5496	-	hypothetical protein
43	 65.79	0	45882..47132	+	416	134290927	-	Bcep1808_5497	-	metallophosphoesterase
44	 71.31	0	47136..50606	+	1156	134290928	-	Bcep1808_5498	-	hypothetical protein
45	 65.14	0	50725..51249	+	174	134290929	-	Bcep1808_5499	-	metal dependent phosphohydrolase
46	 66.52	0	51259..51957	+	232	134290930	-	Bcep1808_5500	-	hypothetical protein
47	 60.93	-1	52085..52555	-	156	134290931	-	Bcep1808_5501	-	hypothetical protein
48	 58.99	-1	58692..59069	-	125	134290932	-	Bcep1808_5502	-	hypothetical protein
49	 59.84	-1	59126..59374	-	82	134290933	-	Bcep1808_5503	-	hypothetical protein
50	 66.47	0	59444..60457	-	337	134290934	-	Bcep1808_5504	-	AraC family transcriptional regulator
51	 69.06	0	60596..62263	+	555	134290935	-	Bcep1808_5505	-	AMP-dependent synthetase and ligase
52	 70.83	0	62321..63064	+	247	134290936	-	Bcep1808_5506	-	short-chain dehydrogenase/reductase SDR
53	 69.10	0	63088..64278	+	396	134290937	-	Bcep1808_5507	-	acetyl-CoA acetyltransferase
54	 67.98	0	64369..65055	-	228	134290938	-	Bcep1808_5508	-	TetR family transcriptional regulator
55	 68.46	0	65417..66697	+	426	134290939	-	Bcep1808_5509	-	allantoate amidohydrolase
56	 71.45	+1	66824..68161	+	445	134290940	-	Bcep1808_5510	-	putative oxidoreductase
57	 66.59	0	68262..69569	+	435	134290941	-	Bcep1808_5511	-	dihydropyrimidine dehydrogenase
58	 67.66	0	69667..71175	+	502	134290942	-	Bcep1808_5512	-	NCS1 nucleoside transporter
59	 68.59	0	71231..72688	+	485	134290943	-	Bcep1808_5513	-	dihydropyrimidinase
60	 67.02	0	72727..73848	-	373	134290944	-	Bcep1808_5514	-	Rieske (2Fe-2S) domain-containing protein
61	 69.09	0	74041..74784	-	247	134290945	-	Bcep1808_5515	-	methionine sulfoxide reductase A
62	 72.71	+1	74869..76737	-	622	134290946	-	Bcep1808_5516	-	cytochrome c biogenesis protein, transmembrane region
63	 73.26	+1	76775..77305	-	176	134290947	-	Bcep1808_5517	-	methionine-R-sulfoxide reductase
64	 60.05	-1	77418..77840	-	140	134290948	-	Bcep1808_5518	-	hypothetical protein
65	 58.69	-1	77853..78893	+	346	134290949	-	Bcep1808_5519	-	phage integrase family protein
66	 62.01	0	79291..79569	+	92	134290950	-	Bcep1808_5520	-	histone family protein DNA-binding protein
67	 60.45	-1	79850..80476	+	208	134290951	-	Bcep1808_5521	-	hypothetical protein
68	 54.99	-2	80792..81382	-	196	134290952	-	Bcep1808_5522	-	hypothetical protein
69	 63.81	0	81457..82274	+	272	134290953	-	Bcep1808_5523	-	transposase and inactivated derivatives-like protein
70	 58.67	-1	82441..83328	+	295	134290954	-	Bcep1808_5524	-	putative transcriptional regulator
71	 56.47	-1	83574..85112	+	512	134290955	-	Bcep1808_5525	-	integrase catalytic subunit
72	 59.77	-1	85164..85685	-	173	134290956	-	Bcep1808_5526	-	hypothetical protein
73	 59.68	-1	85880..86866	+	328	134290957	-	Bcep1808_5527	-	transposase, IS4 family protein
74	 64.25	0	87028..87441	+	137	134290958	-	Bcep1808_5528	-	hypothetical protein
75	 66.92	0	87572..87967	+	131	134290959	-	Bcep1808_5529	-	hypothetical protein
76	 67.47	0	88014..88757	+	247	134290960	-	Bcep1808_5530	-	hypothetical protein
77	 59.22	-1	89029..89283	+	84	134290961	-	Bcep1808_5531	-	hypothetical protein
78	 66.28	0	89390..89902	-	170	134290962	-	Bcep1808_5532	-	hypothetical protein
79	 51.69	-2	89960..90313	-	117	134290963	-	Bcep1808_5533	-	transport-associated
80	 59.50	-1	91049..92122	+	357	134290964	-	Bcep1808_5534	-	hypothetical protein
81	 53.10	-2	92119..92634	+	171	134290965	-	Bcep1808_5535	-	hypothetical protein
82	 67.54	0	92936..93163	-	75	134290966	-	Bcep1808_5536	-	hypothetical protein
83	 58.78	-1	93514..93792	+	92	134290967	-	Bcep1808_5538	-	transposase IS3/IS911 family protein
84	 61.19	0	93943..94362	+	139	134290968	-	Bcep1808_5539	-	transposase IS3/IS911 family protein
85	 64.41	0	94350..94703	+	117	134290969	-	Bcep1808_5540	-	IS66 Orf2 family protein
86	 62.80	0	94734..96335	+	533	134290970	-	Bcep1808_5541	-	transposase IS66
87	 55.04	-2	96700..97731	+	343	134290971	-	Bcep1808_5543	-	transposase IS116/IS110/IS902 family protein
88	 61.98	0	97947..98522	+	191	134290972	-	Bcep1808_5544	-	integrase catalytic subunit
89	 58.00	-1	99003..99302	+	99	134290973	-	Bcep1808_5545	-	histone family protein nucleoid-structuring protein H-NS
90	 53.68	-2	100004..100642	-	212	134290974	-	Bcep1808_5546	-	two component LuxR family transcriptional regulator
91	 60.28	-1	101003..101989	-	328	134290975	-	Bcep1808_5547	-	diguanylate cyclase
92	 64.75	0	102168..103787	+	539	134290976	-	Bcep1808_5548	-	integrase catalytic subunit
93	 58.59	-1	104577..105938	+	453	134290977	-	Bcep1808_5550	-	transposase IS116/IS110/IS902 family protein
94	 58.81	-1	106408..107031	-	207	134290978	-	Bcep1808_5551	-	diguanylate cyclase
95	 58.82	-1	107350..107961	-	203	134290979	-	Bcep1808_5552	-	hypothetical protein
96	 61.63	0	107981..109171	+	396	134290980	-	Bcep1808_5553	-	diguanylate phosphodiesterase
97	 62.96	0	109382..111079	+	565	134290981	-	Bcep1808_5554	-	methyl-accepting chemotaxis sensory transducer
98	 53.78	-2	112584..113072	+	162	134290982	-	Bcep1808_5556	-	hypothetical protein
99	 62.85	0	113792..114184	+	130	134290983	-	Bcep1808_5559	-	hypothetical protein
100	 63.15	0	114222..115331	+	369	134290984	-	Bcep1808_5560	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
66.18	MEAN

5.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.