IslandPath Analysis: Ochrobactrum anthropi ATCC 49188



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 56.62   STD DEV: 3.41
Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence - 1..2887297
2731 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 59.18	0	277..543	+	88	153007347	-	Oant_0002	-	30S ribosomal protein S20
2	 59.25	0	1439..3001	+	520	153007348	-	Oant_0003	-	chromosomal replication initiation protein
3	 58.38	0	3169..4326	+	385	153007349	-	Oant_0004	-	DNA polymerase III subunit beta
4	 59.45	0	4338..5501	+	387	153007350	-	Oant_0005	-	recombination protein F
5	 58.11	0	5574..6356	+	260	153007351	-	Oant_0006	-	molybdopterin biosynthesis protein MoeB
6	 55.09	0	6353..6853	+	166	153007352	-	Oant_0007	-	GCN5-related N-acetyltransferase
7	 57.62	0	6831..8090	+	419	153007353	-	Oant_0008	-	hypothetical protein
8	 60.68	+1	8087..8554	+	155	153007354	-	Oant_0009	-	hypothetical protein
9	 59.87	0	8551..9507	-	318	153007355	-	Oant_0010	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
10	 58.84	0	9504..11165	-	553	153007356	-	Oant_0011	-	ABC transporter related
11	 57.46	0	11162..12301	-	379	153007357	-	Oant_0012	-	binding-protein-dependent transport systems inner membrane component
12	 57.29	0	12301..13398	-	365	153007358	-	Oant_0013	-	binding-protein-dependent transport systems inner membrane component
13	 58.06	0	13505..15352	-	615	153007359	-	Oant_0014	-	extracellular solute-binding protein
14	 55.97	0	15366..17234	-	622	153007360	-	Oant_0015	-	extracellular solute-binding protein
15	 58.96	0	17381..18055	-	224	153007361	-	Oant_0016	-	cytochrome c class I
16	 58.27	0	18302..19051	+	249	153007362	-	Oant_0017	-	3-deoxy-manno-octulosonate cytidylyltransferase
17	 56.71	0	19091..19954	+	287	153007363	-	Oant_0018	-	prephenate dehydratase
18	 59.45	0	19955..20938	-	327	153007364	-	Oant_0019	-	NADH pyrophosphatase-like protein
19	 60.49	+1	20987..21391	-	134	153007365	-	Oant_0020	-	histidine triad (HIT) protein
20	 61.50	+1	21700..23517	+	605	153007366	-	Oant_0021	-	DNA polymerase III subunits gamma and tau
21	 60.19	+1	23542..23865	+	107	153007367	-	Oant_0022	-	hypothetical protein
22	 60.23	+1	23974..24579	+	201	153007368	-	Oant_0023	-	recombination protein RecR
23	 57.78	0	24596..25855	+	419	153007369	-	Oant_0024	-	lytic murein transglycosylase
24	 28.30	-2	25982..26617	+	211	153007370	-	Oant_0025	-	hypothetical protein
25	 59.46	0	26656..27543	-	295	153007371	-	Oant_0026	-	LysR family transcriptional regulator
26	 59.08	0	27693..28733	+	346	153007372	-	Oant_0027	-	hypothetical protein
27	 56.49	0	28782..29528	-	248	153007373	-	Oant_0028	-	hypothetical protein
28	 57.85	0	29804..31504	-	566	153007374	-	Oant_0029	-	30S ribosomal protein S1
29	 61.40	+1	31720..32364	-	214	153007375	-	Oant_0030	-	cytidylate kinase
30	 61.94	+1	32361..33713	-	450	153007376	-	Oant_0031	-	3-phosphoshikimate 1-carboxyvinyltransferase
31	 56.43	0	34027..34446	+	139	153007377	-	Oant_0032	-	hypothetical protein
32	 59.14	0	34830..35480	+	216	153007378	-	Oant_0033	-	glutathione S-transferase domain-containing protein
33	 52.68	-1	35591..36727	+	378	153007379	-	Oant_0034	-	acyltransferase 3
34	 59.18	0	36750..37604	-	284	153007380	-	Oant_0035	-	hypothetical protein
35	 59.23	0	38261..40249	+	662	153007381	-	Oant_0036	-	acetoacetyl-CoA synthetase
36	 59.11	0	40436..41599	+	387	153007382	-	Oant_0037	-	acyl-CoA dehydrogenase domain-containing protein
37	 62.00	+1	41599..43206	+	535	153007383	-	Oant_0038	-	propionyl-CoA carboxylase
38	 58.99	0	43219..45186	+	655	153007384	-	Oant_0039	-	carbamoyl-phosphate synthase L chain ATP-binding
39	 59.72	0	45179..46042	+	287	153007385	-	Oant_0040	-	hydroxymethylglutaryl-CoA lyase
40	 61.64	+1	46039..46833	+	264	153007386	-	Oant_0041	-	enoyl-CoA hydratase
41	 59.89	0	47159..48265	+	368	153007387	-	Oant_0042	-	extracellular ligand-binding receptor
42	 57.41	0	48336..48929	-	197	153007388	-	Oant_0043	-	protein tyrosine/serine phosphatase
43	 54.73	0	49232..49432	+	66	153007389	-	Oant_0044	-	hypothetical protein
44	 55.66	0	50115..50423	+	102	153007390	-	Oant_0045	-	stress responsive alpha-beta barrel domain-containing protein
45	 59.48	0	50420..51379	-	319	153007391	-	Oant_0046	-	hypothetical protein
46	 53.09	-1	51602..51844	+	80	153007392	-	Oant_0047	-	hypothetical protein
47	 58.04	0	51957..52964	+	335	153007393	-	Oant_0048	-	ubiquinol oxidase, subunit II
48	 58.99	0	53094..55073	+	659	153007394	-	Oant_0049	-	cytochrome o ubiquinol oxidase subunit I
49	 58.25	0	55079..55708	+	209	153007395	-	Oant_0050	-	cytochrome o ubiquinol oxidase subunit III
50	 55.01	0	55708..56076	+	122	153007396	-	Oant_0051	-	cytochrome o ubiquinol oxidase subunit IV
51	 63.14	+1	56593..57300	+	235	153007397	-	Oant_0052	-	SH3 type 3 domain-containing protein
52	 60.66	+1	57594..59609	+	671	153007398	-	Oant_0053	-	surface antigen (D15)
53	 59.51	0	59606..64342	+	1578	153007399	-	Oant_0054	-	hypothetical protein
54	 59.78	0	64667..65392	+	241	153007400	-	Oant_0055	-	ErfK/YbiS/YcfS/YnhG family protein
55	 62.04	+1	65603..65818	-	71	153007401	-	Oant_0056	-	hypothetical protein
56	 58.43	0	65918..66427	-	169	153007402	-	Oant_0057	-	hypothetical protein
57	 60.93	+1	67168..68196	-	342	153007403	-	Oant_0058	-	hypothetical protein
58	 59.65	0	68316..68714	-	132	153007404	-	Oant_0059	-	hypothetical protein
59	 58.78	0	68846..70417	-	523	153007405	-	Oant_0060	-	glucose-methanol-choline oxidoreductase
60	 58.20	0	70514..71068	-	184	153007406	-	Oant_0061	-	hypothetical protein
61	 53.54	0	71207..71602	-	131	153007407	-	Oant_0062	-	glyoxalase/bleomycin resistance protein/dioxygenase
62	 62.24	+1	71746..72039	+	97	153007408	-	Oant_0063	-	hypothetical protein
63	 63.16	+1	72166..73335	+	389	153007409	-	Oant_0064	-	hypothetical protein
64	 58.88	0	73369..75000	-	543	153007410	-	Oant_0065	-	phosphoglucomutase
65	 62.08	+1	75138..76010	+	290	153007411	-	Oant_0066	-	AraC family transcriptional regulator
66	 57.18	0	76038..76448	+	136	153007412	-	Oant_0067	-	hypothetical protein
67	 62.58	+1	76432..77751	-	439	153007413	-	Oant_0068	-	ROK family protein
68	 59.98	0	78213..79244	+	343	153007414	-	Oant_0069	-	periplasmic binding protein/LacI transcriptional regulator
69	 59.91	0	79321..80415	+	364	153007415	-	Oant_0070	-	monosaccharide-transporting ATPase
70	 61.15	+1	80412..81191	+	259	153007416	-	Oant_0071	-	ABC transporter related
71	 59.97	0	81259..81900	+	213	153007417	-	Oant_0072	-	putative fructose transport system kinase
72	 60.29	+1	81994..82683	+	229	153007418	-	Oant_0073	-	fumarylacetoacetate (FAA) hydrolase
73	 58.33	0	82708..82899	+	63	153007419	-	Oant_0074	-	hypothetical protein
74	 51.17	-1	82918..83130	+	70	153007420	-	Oant_0075	-	hypothetical protein
75	 50.26	-1	83295..83483	+	62	153007421	-	Oant_0076	-	hypothetical protein
76	 63.46	+2	83552..84394	+	280	153007422	-	Oant_0077	-	lytic transglycosylase catalytic
77	 58.30	0	84576..85232	+	218	153007423	-	Oant_0078	-	Hly-III family protein
78	 60.27	+1	85494..88727	-	1077	153007424	-	Oant_0079	-	error-prone DNA polymerase
79	 62.38	+1	88727..90196	-	489	153007425	-	Oant_0080	-	hypothetical protein
80	 61.90	+1	90216..91034	-	272	153007426	-	Oant_0081	-	hypothetical protein
81	 60.50	+1	91226..91582	-	118	153007427	-	Oant_0082	-	hypothetical protein
82	 58.76	0	91579..92109	-	176	153007428	-	Oant_0083	-	MarR family transcriptional regulator
83	 56.76	0	92247..92468	+	73	153007429	-	Oant_0084	-	hypothetical protein
84	 57.92	0	92465..93253	+	262	153007430	-	Oant_0085	-	methionine aminopeptidase, type I
85	 58.11	0	93357..94595	-	412	153007431	-	Oant_0086	-	argininosuccinate synthase
86	 59.67	0	94693..94992	-	99	153007432	-	Oant_0087	-	antibiotic biosynthesis monooxygenase
87	 58.64	0	95066..95725	+	219	153007433	-	Oant_0088	-	lysine exporter protein LysE/YggA
88	 58.73	0	95788..96291	-	167	153007434	-	Oant_0089	-	hypothetical protein
89	 58.82	0	96322..97557	-	411	153007435	-	Oant_0090	-	radical SAM protein
90	 56.55	0	97823..98326	-	167	153007436	-	Oant_0091	-	hypothetical protein
91	 61.42	+1	98678..99058	-	126	153007437	-	Oant_0092	-	hypothetical protein
92	 52.35	-1	99280..99789	+	169	153007438	-	Oant_0093	-	hypothetical protein
93	 54.30	0	99792..100082	-	96	153007439	-	Oant_0094	-	pterin-4-alpha-carbinolamine dehydratase
94	 59.20	0	100139..100660	+	173	153007440	-	Oant_0095	-	protein tyrosine phosphatase
95	 60.24	+1	100570..101160	-	196	153007441	-	Oant_0096	-	2'-5' RNA ligase
96	 57.92	0	101341..102060	-	239	153007442	-	Oant_0097	-	GDSL family lipase
97	 60.36	+1	102192..102920	+	242	153007443	-	Oant_0098	-	ABC transporter related
98	 61.37	+1	102917..105466	+	849	153007444	-	Oant_0099	-	hypothetical protein
99	 60.15	+1	105701..106483	+	260	153007445	-	Oant_0100	-	hypothetical protein
100	 56.87	0	106560..107141	+	193	153007446	-	Oant_0101	-	GCN5-related N-acetyltransferase
56.62	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.