IslandPath Analysis: Dichelobacter nodosus VCS1703A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.37   STD DEV: 4.11
Dichelobacter nodosus VCS1703A, complete genome - 1..1389350
1280 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.82	-2	130..1458	+	442	146328959	dnaA	DNO_0001	-	chromosomal replication initiator protein
2	 40.08	-1	1668..2912	+	414	146329375	dnaN	DNO_0002	-	DNA polymerase III, beta subunit
3	 45.59	0	2978..4837	+	619	146329635	-	DNO_0003	-	acyltransferase domain-containing protein
4	 50.82	+1	4830..5624	+	264	146329274	-	DNO_0005	-	glutamate racemase
5	 46.67	0	5534..7708	-	724	146329819	yccS	DNO_0004	-	membrane protein
6	 37.18	-1	7738..7893	+	51	146329345	-	DNO_0006	-	hypothetical protein
7	 36.30	-1	8034..9416	+	460	146328669	-	DNO_0007	-	leucine rich repeat domain-containing protein
8	 44.84	0	9542..11227	-	561	146329407	-	DNO_0009	-	hypothetical protein
9	 32.12	-2	11257..11421	-	54	146328854	-	DNO_0010	-	hypothetical protein
10	 43.85	0	11520..11966	+	148	146329561	uspA	DNO_0011	-	universal stress family protein
11	 39.80	-1	12181..13170	+	329	146329262	-	DNO_0012	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
12	 44.77	0	13287..14720	-	477	146328674	-	DNO_0013	-	aminoacyl-histidine dipeptidase
13	 39.62	-1	15025..17202	+	725	146329042	-	DNO_0014	-	ornithine decarboxylase
14	 39.09	-1	17276..18595	+	439	146328817	-	DNO_0015	-	putrescine transporter
15	 47.62	0	19061..20089	+	342	146329823	-	DNO_0018	-	O-sialoglycoprotein endopeptidase
16	 46.39	0	20084..22228	-	714	146329246	relA	DNO_0017	-	GTP pyrophosphokinase
17	 43.24	0	22225..24870	-	881	146328875	-	DNO_0019	-	aminopeptidase
18	 46.52	0	24911..27178	-	755	146329878	maeB	DNO_0020	-	malic enzyme
19	 48.56	+1	27263..28267	+	334	146329366	-	DNO_0021	-	beta-hexosaminidase
20	 41.36	0	28257..28667	+	136	146328948	-	DNO_0022	-	hypothetical protein
21	 41.67	0	28670..29233	+	187	146329012	-	DNO_0023	-	hypoxanthine-guanine phosphoribosyltransferase
22	 45.28	0	29205..29564	+	119	146329642	-	DNO_0024	-	lipoprotein
23	 44.83	0	29747..31198	+	483	146329774	-	DNO_0025	-	hypothetical protein
24	 45.07	0	31252..32316	-	354	146329296	queA	DNO_0026	-	S-adenosylmethionine:tRNA ribosyltransferase- isomerase
25	 46.53	0	32316..33209	-	297	146329574	truB	DNO_0027	-	tRNA pseudouridine synthase B
26	 46.07	0	33212..33580	-	122	146328987	rbfA	DNO_0028	-	ribosome-binding factor A
27	 46.52	0	33580..36219	-	879	146329713	infB	DNO_0029	-	translation initiation factor IF-2
28	 47.85	0	36240..37727	-	495	146329748	nusA	DNO_0030	-	transcription termination factor
29	 45.51	0	37746..38213	-	155	146329510	-	DNO_0031	-	hypothetical protein
30	 39.00	-1	38976..39716	+	246	146329480	-	DNO_0033	-	extracellular solute-binding family protein
31	 37.72	-1	39902..40630	+	242	146328869	-	DNO_0034	-	extracellular solute-binding family protein
32	 43.15	0	40879..41550	+	223	146329558	-	DNO_0035	-	hypothetical protein
33	 43.87	0	41638..42453	+	271	146328953	-	DNO_0036	-	NlpC/P60 domain-containing protein
34	 43.98	0	42519..43373	-	284	146329143	-	DNO_0037	-	hypothetical protein
35	 45.49	0	43538..44458	-	306	146329873	secF	DNO_0038	-	preprotein translocase, SecF subunit
36	 46.14	0	44469..46334	-	621	146329406	secD	DNO_0039	-	preprotein translocase, SecD subunit
37	 40.49	0	46402..46806	-	134	146328728	-	DNO_0040	-	preprotein translocase, YajC subunit
38	 47.30	0	46987..47895	-	302	146329464	xerC	DNO_0041	-	site-specific recombinase XerC
39	 49.82	+1	47892..48728	-	278	146328927	dapF	DNO_0042	-	diaminopimelate epimerase
40	 49.15	+1	48736..49614	-	292	146329554	-	DNO_0043	-	hypothetical protein
41	 34.75	-2	49667..49807	+	46	146328806	-	DNO_0044	-	hypothetical protein
42	 44.93	0	49807..50418	+	203	146329035	-	DNO_0045	-	hypothetical protein
43	 48.44	0	50444..51277	+	277	146329334	-	DNO_0046	-	ABC transporter family protein
44	 43.95	0	51261..52004	+	247	146329167	-	DNO_0047	-	hypothetical protein
45	 41.22	0	51998..52999	+	333	146329631	-	DNO_0048	-	putative periplasmic protease
46	 43.82	0	53027..54466	+	479	146329700	-	DNO_0049	-	aminoacyl-histidine dipeptidase
47	 39.52	-1	54566..55519	-	317	146329564	-	DNO_0050	-	hypothetical protein
48	 43.98	0	55529..56176	-	215	146329060	-	DNO_0051	-	hypothetical protein
49	 42.51	0	56237..56977	-	246	146328805	-	DNO_0052	-	hypothetical protein
50	 43.06	0	57206..59764	+	852	146329379	-	DNO_0053	-	mechanosensitive ion channel family protein
51	 40.00	-1	60224..60388	-	54	146328929	-	DNO_0057	-	hypothetical protein
52	 42.19	0	60962..61198	+	78	146329689	rpmB	DNO_0060	-	50S ribosomal protein L28
53	 36.84	-1	61210..61380	+	56	146329897	rpmG	DNO_0061	-	50S ribosomal protein L33
54	 43.13	0	61430..62644	-	404	146328921	-	DNO_0062	-	hypothetical protein
55	 40.53	0	62648..63217	-	189	146329537	pth	DNO_0063	-	peptidyl-tRNA hydrolase
56	 42.92	0	63223..63900	-	225	146328681	rplY	DNO_0064	-	50S ribosomal protein L25
57	 46.11	0	63977..64915	-	312	146329368	prsA	DNO_0065	-	ribose-phosphate pyrophosphokinase
58	 38.44	-1	65162..65749	-	195	146329838	-	DNO_0067	-	lipoprotein
59	 38.97	-1	65736..67439	-	567	146329833	-	DNO_0068	-	TPR repeat-containing protein
60	 45.82	0	67528..68784	+	418	146329251	hemA	DNO_0069	-	glutamyl-tRNA reductase
61	 40.97	0	68801..68944	+	47	146329153	-	DNO_0070	-	hypothetical protein
62	 45.99	0	68941..70038	+	365	146329088	prfA	DNO_0071	-	peptide chain release factor 1
63	 51.26	+1	70035..70865	+	276	146328946	-	DNO_0072	-	HemK family modification methylase
64	 47.34	0	70873..71850	-	325	146329305	-	DNO_0073	-	dipeptidase family protein
65	 45.66	0	71992..72786	+	264	146329413	-	DNO_0074	-	enoyl-[acyl-carrier-protein] reductase
66	 48.62	+1	72832..73629	-	265	146329858	-	DNO_0075	-	hypothetical protein
67	 47.55	0	73660..76473	-	937	146328800	uvrA	DNO_0076	-	excinuclease ABC, A subunit
68	 49.91	+1	76480..77010	-	176	146329227	purE	DNO_0077	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
69	 47.25	0	77014..78141	-	375	146329815	purK	DNO_0078	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
70	 44.15	0	78273..78614	+	113	146328811	-	DNO_0080	-	hypothetical protein
71	 45.62	0	78611..79489	-	292	146329325	-	DNO_0079	-	hypothetical protein
72	 46.17	0	79671..80348	+	225	146328667	-	DNO_0081	-	OmpA family protein
73	 47.71	0	80485..81444	+	319	146329723	ribF	DNO_0082	-	riboflavin kinase RibF
74	 45.37	0	81455..84229	+	924	146329527	ileS	DNO_0083	-	isoleucyl-tRNA synthetase
75	 44.95	0	84229..84693	+	154	146329202	lspA	DNO_0084	-	signal peptidase II
76	 27.56	-2	84994..85218	-	74	146329771	-	DNO_0085	-	hypothetical protein
77	 46.08	0	85225..85836	-	203	146329357	-	DNO_0086	-	glutathione S-transferase
78	 43.94	0	86117..87493	+	458	146329030	hemN-1	DNO_0087	-	oxygen-independent coproporphyrinogen III oxidase
79	 48.48	+1	87536..89053	+	505	146329901	purF	DNO_0088	-	amidophosphoribosyltransferase
80	 48.02	0	89046..89753	+	235	146329187	-	DNO_0089	-	hypothetical protein
81	 48.51	+1	89764..90435	+	223	146328751	-	DNO_0090	-	thiamine pyrophosphokinase family protein
82	 50.99	+1	90518..91072	+	184	146329346	-	DNO_0091	-	NADPH-dependent FMN reductase
83	 44.88	0	91192..92196	+	334	146328658	gap	DNO_0092	-	glyceraldehyde-3-phosphate dehydrogenase
84	 47.13	0	95444..97183	-	579	146328856	-	DNO_0094	-	ABC transporter family protein
85	 49.55	+1	97230..98666	+	478	146329580	rfaE	DNO_0095	-	ADP-heptose synthase
86	 48.91	+1	98698..99840	+	380	146328672	-	DNO_0096	-	FAD dependent oxidoreductase superfamily protein
87	 42.63	0	99841..101034	-	397	146329820	-	DNO_0097	-	glycosyl transferase family protein
88	 41.30	0	101172..101309	-	45	146329040	-	DNO_0098	-	hypothetical protein
89	 45.49	0	101322..102473	-	383	146329493	cydB	DNO_0099	-	cytochrome bd ubiquinol oxidase, subunit II
90	 44.79	0	102476..104029	-	517	146328926	cydA	DNO_0100	-	cytochrome bd ubiquinol oxidase, subunit I
91	 48.53	+1	104060..105691	-	543	146329160	cydC	DNO_0101	-	ABC-type transporter involved in cytochrome bd biosynthesis
92	 48.96	+1	105666..107354	-	562	146329835	cydD	DNO_0102	-	ABC-type transporter involved in cytochrome bd biosynthesis
93	 46.46	0	107357..107653	-	98	146329282	-	DNO_0103	-	hypothetical protein
94	 45.26	0	107739..109289	-	516	146329373	-	DNO_0104	-	sulfate transporter family protein
95	 43.51	0	109557..110990	-	477	146329669	-	DNO_0105	-	alkaline phosphatase
96	 48.23	0	111182..112483	-	433	146329640	-	DNO_0106	-	hypothetical protein
97	 42.75	0	112497..113771	-	424	146328652	-	DNO_0107	-	hypothetical protein
98	 46.31	0	114084..116657	+	857	146329388	clpB	DNO_0108	-	ATP-dependent protease ClpB
99	 38.37	-1	116736..117509	-	257	146329412	fimB	DNO_0109	-	fimbrial protein FimB
100	 40.90	0	117650..118138	-	162	146328769	fimA	DNO_0110	-	fimbrial subunit FimA
44.37	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.