IslandPath Analysis: Ignicoccus hospitalis KIN4/I



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 56.26   STD DEV: 4.01
Ignicoccus hospitalis KIN4/I, complete genome - 1..1297538
1434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.39	0	143..1972	-	609	156936796	-	Igni_0001	-	translation initiation factor IF-2
2	 55.76	0	2130..3431	-	433	156936797	-	Igni_0002	-	FAD linked oxidase domain-containing protein
3	 50.59	-1	3442..3864	-	140	156936798	-	Igni_0003	-	hypothetical protein
4	 53.33	0	4026..4610	+	194	156936799	-	Igni_0004	-	tRNA splicing endonuclease
5	 54.61	0	4549..5286	-	245	156936800	-	Igni_0005	-	radical SAM domain-containing protein
6	 53.02	0	5291..5671	-	126	156936801	-	Igni_0006	-	hypothetical protein
7	 52.79	0	5710..7683	-	657	156936802	-	Igni_0007	-	DNA topoisomerase III
8	 52.82	0	7738..8553	+	271	156936803	-	Igni_0008	-	hypothetical protein
9	 53.09	0	8558..10516	-	652	156936804	-	Igni_0009	-	beta-lactamase domain-containing protein
10	 50.69	-1	10527..10958	-	143	156936805	-	Igni_0010	-	hypothetical protein
11	 56.19	0	10984..11508	+	174	156936806	-	Igni_0011	-	molybdenum cofactor synthesis domain-containing protein
12	 45.98	-2	11486..11920	+	144	156936807	-	Igni_0012	-	hypothetical protein
13	 52.44	0	11946..13400	-	484	156936808	-	Igni_0013	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
14	 48.15	-2	13348..13752	-	134	156936809	-	Igni_0014	-	ArsR family transcriptional regulator
15	 48.59	-1	13731..14405	-	224	156936810	-	Igni_0015	-	hypothetical protein
16	 51.08	-1	14447..16678	+	743	156936811	-	Igni_0016	-	hypothetical protein
17	 50.13	-1	16698..19751	+	1017	156936812	-	Igni_0017	-	hypothetical protein
18	 53.26	0	19735..20838	+	367	156936813	-	Igni_0018	-	3-dehydroquinate synthase
19	 56.26	0	20824..21534	-	236	156936814	-	Igni_0019	-	ProFAR isomerase family protein
20	 54.46	0	21592..22017	+	141	156936815	-	Igni_0020	-	hypothetical protein
21	 57.66	0	22014..23168	+	384	156936816	-	Igni_0021	-	nicotinate phosphoribosyltransferase
22	 51.08	-1	23149..23751	-	200	156936817	-	Igni_0022	-	RNA-binding protein
23	 49.72	-1	23816..24517	+	233	156936818	-	Igni_0023	-	hypothetical protein
24	 59.73	0	24570..24944	+	124	156936819	-	Igni_0024	-	hypothetical protein
25	 56.31	0	24979..26793	+	604	156936820	-	Igni_0025	-	aldehyde ferredoxin oxidoreductase
26	 49.40	-1	27333..27749	+	138	156936821	-	Igni_0026	-	hypothetical protein
27	 50.45	-1	27791..28123	-	110	156936822	-	Igni_0027	-	hypothetical protein
28	 47.92	-2	28207..28446	-	79	156936823	-	Igni_0028	-	hypothetical protein
29	 52.43	0	28586..28894	+	102	156936824	-	Igni_0029	-	phosphoribosyl-ATP pyrophosphohydrolase
30	 52.02	-1	28875..29468	+	197	156936825	-	Igni_0030	-	imidazole glycerol phosphate synthase subunit hisH
31	 53.68	0	29465..30049	-	194	156936826	-	Igni_0031	-	hypothetical protein
32	 53.73	0	30286..30687	+	133	156936827	-	Igni_0032	-	hypothetical protein
33	 55.21	0	30684..31172	+	162	156936828	-	Igni_0033	-	hypothetical protein
34	 51.52	-1	31169..32383	-	404	156936829	-	Igni_0034	-	hypothetical protein
35	 53.48	0	32522..33181	-	219	156936830	-	Igni_0035	-	hypothetical protein
36	 54.92	0	33252..35234	-	660	156936831	-	Igni_0036	-	anaerobic ribonucleoside triphosphate reductase
37	 47.50	-2	35355..35714	-	119	156936832	-	Igni_0037	-	hypothetical protein
38	 52.40	0	35720..37534	-	604	156936833	-	Igni_0038	-	putative ATPase RIL
39	 58.33	0	37776..37943	+	55	156936834	-	Igni_0039	-	hypothetical protein
40	 52.61	0	38018..39262	+	414	156936835	-	Igni_0040	-	adenosylhomocysteinase
41	 56.04	0	39256..40149	+	297	156936836	-	Igni_0041	-	ribokinase-like domain-containing protein
42	 57.16	0	40502..41164	-	220	156936837	-	Igni_0042	-	oxidoreductase FAD/NAD(P)-binding subunit
43	 47.05	-2	41171..41644	-	157	156936838	-	Igni_0043	-	aspartate carbamoyltransferase regulatory subunit
44	 49.35	-1	41646..42563	-	305	156936839	-	Igni_0044	-	aspartate carbamoyltransferase
45	 50.47	-1	42586..44703	+	705	156936840	-	Igni_0045	-	hypothetical protein
46	 56.50	0	44652..45074	-	140	156936841	-	Igni_0046	-	hypothetical protein
47	 52.19	-1	45142..46239	+	365	156936842	-	Igni_0047	-	cytochrome c assembly protein
48	 52.27	0	46305..46700	+	131	156936843	-	Igni_0048	-	hypothetical protein
49	 57.76	0	46676..47461	+	261	156936844	-	Igni_0049	-	hypothetical protein
50	 55.51	0	47461..48195	+	244	156936845	-	Igni_0050	-	hypothetical protein
51	 56.99	0	48192..49349	+	385	156936846	-	Igni_0051	-	SAM-dependent methyltransferase
52	 53.10	0	49321..50190	-	289	156936847	-	Igni_0052	-	CDP-alcohol phosphatidyltransferase
53	 51.50	-1	50209..51969	-	586	156936848	-	Igni_0053	-	DEAD_2 domain-containing protein
54	 49.10	-1	51990..52433	-	147	156936849	-	Igni_0054	-	hypothetical protein
55	 51.23	-1	52482..53213	+	243	156936850	-	Igni_0055	-	hypothetical protein
56	 44.19	-2	53197..53970	-	257	156936851	-	Igni_0056	-	MscS mechanosensitive ion channel
57	 52.01	-1	54109..54954	+	281	156936852	-	Igni_0057	-	L-2-aminoadipate N-acetyltransferase
58	 51.11	-1	55001..55720	+	239	156936853	-	Igni_0058	-	peptidylprolyl isomerase, FKBP-type
59	 47.38	-2	55751..56284	-	177	156936854	-	Igni_0059	-	putative transcription elongation factor
60	 52.53	0	56585..57256	+	223	156936855	-	Igni_0060	-	metallophosphoesterase
61	 54.22	0	57314..58639	+	441	156936856	-	Igni_0061	-	DNA primase
62	 49.77	-1	58650..61010	-	786	156936857	-	Igni_0062	-	DNA polymerase II
63	 51.61	-1	61050..61421	-	123	156936858	-	Igni_0063	-	hypothetical protein
64	 54.36	0	61482..62123	+	213	156936859	-	Igni_0064	-	hypothetical protein
65	 51.40	-1	62158..62478	+	106	156936860	-	Igni_0065	-	SSU ribosomal protein S10P
66	 56.80	0	62924..63997	-	357	156936861	-	Igni_0066	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
67	 55.96	0	64061..65041	-	326	156936862	-	Igni_0067	-	ribosomal RNA methyltransferase NOP2
68	 57.27	0	65081..65857	+	258	156936863	-	Igni_0068	-	hypothetical protein
69	 50.48	-1	65854..66576	-	240	156936864	-	Igni_0069	-	hypothetical protein
70	 58.29	0	66725..68026	+	433	156936865	-	Igni_0070	-	rRNA biogenesis protein Nop56/Nop58
71	 58.01	0	68032..68724	+	230	156936866	-	Igni_0071	-	hypothetical protein
72	 59.74	0	68721..69644	-	307	156936867	-	Igni_0072	-	metallophosphoesterase
73	 50.58	-1	69864..70889	-	341	156936868	-	Igni_0073	-	hypothetical protein
74	 53.81	0	70886..71686	-	266	156936869	-	Igni_0074	-	membrane protein-like protein
75	 48.94	-1	71690..72067	-	125	156936870	-	Igni_0075	-	CopG family transcriptional regulator
76	 50.00	-1	72129..72314	-	61	156936871	-	Igni_0076	-	hypothetical protein
77	 53.08	0	72307..74220	-	637	156936872	-	Igni_0077	-	glutamyl-tRNA(Gln) amidotransferase subunit E
78	 53.50	0	74402..75472	+	356	156936873	-	Igni_0078	-	DNA primase large subunit
79	 57.46	0	75438..76121	-	227	156936874	-	Igni_0079	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
80	 54.90	0	76162..76518	-	118	156936875	-	Igni_0080	-	cupin 2 domain-containing protein
81	 52.72	0	76719..80897	+	1392	156936876	-	Igni_0081	-	hypothetical protein
82	 56.40	0	80811..81365	-	184	156936877	-	Igni_0082	-	hypothetical protein
83	 54.93	0	81380..81592	-	70	156936878	-	Igni_0083	-	DNA-directed RNA polymerase, subunit E''
84	 54.68	0	81589..82122	-	177	156936879	-	Igni_0084	-	DNA-directed RNA polymerase subunit E'
85	 60.27	+1	82186..83076	-	296	156936880	-	Igni_0085	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
86	 57.12	0	83094..84224	-	376	156936881	-	Igni_0086	-	succinyl-CoA synthetase (ADP-forming) beta subunit
87	 56.73	0	84340..84822	+	160	156936882	-	Igni_0087	-	prefoldin, alpha subunit
88	 60.09	0	84833..85045	+	70	156936883	-	Igni_0088	-	hypothetical protein
89	 62.38	+1	85094..85840	+	248	156936884	-	Igni_0089	-	uroporphyrin-III C-methyltransferase
90	 57.73	0	85828..86532	+	234	156936885	-	Igni_0090	-	uroporphyrinogen III synthase HEM4
91	 57.23	0	86553..86711	+	52	156936886	-	Igni_0091	-	hypothetical protein
92	 52.85	0	86708..87322	-	204	156936887	-	Igni_0092	-	hypothetical protein
93	 52.31	0	87471..88118	-	215	156936888	-	Igni_0093	-	hypothetical protein
94	 53.58	0	88150..88554	-	134	156936889	-	Igni_0094	-	hypothetical protein
95	 49.24	-1	88603..88929	-	108	156936890	-	Igni_0095	-	hypothetical protein
96	 58.14	0	89714..91390	+	558	156936891	-	Igni_0096	-	thermosome
97	 59.07	0	91438..92253	+	271	156936892	-	Igni_0097	-	hypothetical protein
98	 60.56	+1	92257..93321	+	354	156936893	-	Igni_0098	-	hypothetical protein
99	 51.69	-1	93303..93716	-	137	156936894	-	Igni_0099	-	HxlR family transcriptional regulator
100	 60.92	+1	93710..94735	-	341	156936895	-	Igni_0100	-	peptidase M24
56.26	MEAN

4.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.