IslandPath Analysis: Neorickettsia sennetsu str. Miyayama



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.12   STD DEV: 3.36
Neorickettsia sennetsu str. Miyayama, complete genome - 1..859006
932 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.54	-1	4..774	+	256	88608392	-	NSE_0001	-	ParB family chromosome partitioning protein
2	 39.08	0	840..2213	+	457	88608502	-	NSE_0002	-	hypothetical protein
3	 35.42	-1	2237..3580	-	447	88608550	-	NSE_0003	-	sensor histidine kinase
4	 35.34	-1	3639..4886	+	415	88608480	-	NSE_0004	-	hypothetical protein
5	 41.67	0	4930..5937	-	335	88608833	-	NSE_0005	-	iron-binding protein
6	 41.04	0	5975..6454	-	159	88608671	-	NSE_0006	-	hypothetical protein
7	 40.47	0	6618..7808	+	396	88608802	-	NSE_0007	-	HK97 family phage portal protein
8	 38.82	0	7908..8162	-	84	88608655	-	NSE_0008	-	hypothetical protein
9	 39.16	0	8215..8763	-	182	88608412	pgsA	NSE_0009	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
10	 40.88	0	8977..9546	+	189	88608358	nuoJ	NSE_0010	-	NADH dehydrogenase I, J subunit
11	 40.62	0	9591..9686	+	31	88608862	-	NSE_0011	-	hypothetical protein
12	 39.67	0	9774..10073	+	99	88608443	nuoK	NSE_0012	-	NADH dehydrogenase I, K subunit
13	 39.77	0	10242..10412	-	56	88608689	-	NSE_0013	-	hypothetical protein
14	 40.55	0	10355..12322	+	655	88608767	nuoL	NSE_0014	-	NADH dehydrogenase I, L subunit
15	 40.92	0	12467..13072	+	201	88608294	-	NSE_0015	-	ankyrin repeat-containing protein
16	 39.78	0	13098..14306	-	402	88608023	tgt	NSE_0016	-	queuine tRNA-ribosyltransferase
17	 38.89	0	14560..14703	+	47	88608674	-	NSE_0017	-	hypothetical protein
18	 47.22	+1	14945..15052	-	35	88608792	-	NSE_0018	-	hypothetical protein
19	 42.70	0	15164..17074	-	636	88608598	dnaK	NSE_0019	-	chaperone protein DnaK
20	 40.85	0	17293..18024	+	243	88608581	truA	NSE_0020	-	tRNA pseudouridine synthase A
21	 44.96	+1	18111..18368	+	85	88608703	-	NSE_0021	-	hypothetical protein
22	 48.08	+2	18539..18694	+	51	88608828	-	NSE_0022	-	hypothetical protein
23	 47.51	+1	18761..21073	+	770	88608147	-	NSE_0023	-	hypothetical protein
24	 48.48	+2	21361..21459	+	32	88608322	-	NSE_0024	-	hypothetical protein
25	 38.49	0	21688..22308	-	206	88608498	-	NSE_0025	-	hypothetical protein
26	 31.25	-2	22386..22481	-	31	88608704	-	NSE_0026	-	hypothetical protein
27	 44.28	0	22538..23332	-	264	88608045	-	NSE_0027	-	hypothetical protein
28	 35.19	-1	23916..24077	+	53	88608746	-	NSE_0028	-	hypothetical protein
29	 37.36	-1	24139..24783	-	214	88608187	-	NSE_0029	-	hypothetical protein
30	 37.21	-1	24806..24934	-	42	88608507	-	NSE_0030	-	hypothetical protein
31	 42.62	0	25144..26112	-	322	88607996	purM	NSE_0031	-	phosphoribosylformylglycinamidine cyclo-ligase
32	 38.53	0	26323..26649	-	108	88608111	mrpC	NSE_0032	-	Na(+)/H(+) antiporter subunit C
33	 36.36	-1	26665..26796	+	43	88608198	-	NSE_0033	-	hypothetical protein
34	 39.13	0	27859..28134	-	91	88608281	-	NSE_0035	-	monovalent cation/proton antiporter, MnhG/PhaG subunit
35	 41.23	0	28338..29021	-	227	88608373	-	NSE_0036	-	hypothetical protein
36	 35.04	-1	29092..29208	-	38	88608219	-	NSE_0037	-	hypothetical protein
37	 40.26	0	29541..29843	+	100	88608129	-	NSE_0038	-	hypothetical protein
38	 46.51	+1	29895..30281	+	128	88608206	rpoZ	NSE_0039	-	DNA-directed RNA polymerase, omega subunit
39	 41.89	0	30303..31214	+	303	88608739	ribF	NSE_0040	-	riboflavin biosynthesis protein RibF
40	 43.81	0	31400..32296	+	298	88608305	-	NSE_0041	-	hypothetical protein
41	 43.02	0	32301..34034	-	577	88608009	-	NSE_0042	-	type I secretion system ATPase
42	 40.10	0	34305..35102	+	265	88608759	fabI	NSE_0043	-	enoyl-(acyl-carrier-protein) reductase
43	 39.73	0	35160..35378	-	72	88608780	thiS	NSE_0044	-	thiamine biosynthesis protein ThiS
44	 40.14	0	35405..35962	-	185	88608798	-	NSE_0045	-	hexapeptide transferase family protein
45	 38.77	0	37788..38210	+	140	88608119	sdhC	NSE_0047	-	succinate dehydrogenase, cytochrome b556 subunit
46	 35.76	-1	38207..38536	+	109	88608060	-	NSE_0048	-	putative succinate dehydrogenase, hydrophobic membrane anchor protein
47	 41.10	0	38541..40253	+	570	88608193	argS	NSE_0049	-	arginyl-tRNA synthetase
48	 41.53	0	40371..41126	-	251	88608506	-	NSE_0050	-	putative membrane proetin
49	 41.57	0	41241..43679	-	812	88608626	-	NSE_0051	-	hypothetical protein
50	 47.49	+1	43984..44202	+	72	88608576	-	NSE_0052	-	hypothetical protein
51	 44.17	0	44209..46248	+	679	88608010	nuoG	NSE_0053	-	NADH dehydrogenase subunit G
52	 42.53	0	46226..47236	+	336	88608314	nuoH	NSE_0054	-	NADH dehydrogenase I, H subunit
53	 41.67	0	47265..47924	+	219	88608109	-	NSE_0055	-	putative osmotically inducible protein
54	 42.53	0	48009..49421	-	470	161511033	fumC	NSE_0056	-	fumarate hydratase
55	 45.82	+1	49726..51999	-	757	88608486	pnp	NSE_0057	-	polynucleotide phosphorylase/polyadenylase
56	 37.93	0	52003..52263	-	86	88608422	rpsO	NSE_0058	-	ribosomal protein S15
57	 42.88	0	52474..53772	-	432	88608580	purB	NSE_0059	-	adenylosuccinate lyase
58	 46.58	+1	53784..54266	-	160	88607969	rplI	NSE_0060	-	ribosomal protein L9
59	 49.10	+2	54279..54500	-	73	88608040	rpsR	NSE_0061	-	ribosomal protein S18
60	 44.64	+1	54545..54889	-	114	88608090	rpsF	NSE_0062	-	ribosomal protein S6
61	 42.38	0	55094..56110	+	338	88608594	-	NSE_0063	-	putative phosphate ABC transporter, periplasmic phosphate-binding protein
62	 39.53	0	56119..57312	+	397	88608332	-	NSE_0064	-	Bcr/CflA subfamily drug resistance transporter
63	 39.71	0	57339..58232	-	297	88608292	-	NSE_0065	-	hypothetical protein
64	 36.92	-1	58542..59210	+	222	88608037	-	NSE_0066	-	putative lipoprotein
65	 42.95	0	59313..60632	-	439	88608814	rho	NSE_0067	-	transcription termination factor Rho
66	 41.63	0	61185..62690	+	501	88608871	-	NSE_0068	-	Mg chelatase-related protein
67	 41.41	0	62874..63071	+	65	88608534	-	NSE_0069	-	hypothetical protein
68	 42.95	0	63096..63563	+	155	88608606	-	NSE_0070	-	hypothetical protein
69	 44.29	0	63633..63851	+	72	88608204	-	NSE_0071	-	hypothetical protein
70	 52.66	+2	64070..64426	+	118	88608361	-	NSE_0072	-	hypothetical protein
71	 38.55	0	64865..65707	+	280	88608091	-	NSE_0073	-	hypothetical protein
72	 33.33	-2	65872..66039	-	55	88608868	-	NSE_0074	-	hypothetical protein
73	 37.30	-1	66207..66332	+	41	88607957	-	NSE_0075	-	hypothetical protein
74	 43.33	0	66473..66592	+	39	88608836	-	NSE_0076	-	hypothetical protein
75	 37.86	0	67058..67300	+	80	88608643	-	NSE_0077	-	hypothetical protein
76	 48.24	+2	67388..68098	-	236	88608450	-	NSE_0078	-	hypothetical protein
77	 50.00	+2	68525..68680	-	51	88608483	-	NSE_0079	-	hypothetical protein
78	 46.91	+1	68745..69407	-	220	88608393	-	NSE_0080	-	hypothetical protein
79	 42.37	0	69139..69459	+	106	88608259	-	NSE_0081	-	hypothetical protein
80	 42.18	0	69894..70040	-	48	88608158	-	NSE_0082	-	hypothetical protein
81	 41.83	0	70325..71089	-	254	88608163	-	NSE_0083	-	hypothetical protein
82	 43.08	0	72068..73534	+	488	88608306	gatB	NSE_0084	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
83	 42.30	0	73527..73961	+	144	88608086	-	NSE_0085	-	cytidine/deoxycytidylate deaminase family protein
84	 35.21	-1	74394..74660	-	88	88607958	-	NSE_0086	-	hypothetical protein
85	 33.33	-2	74886..75071	+	61	88608442	-	NSE_0087	-	hypothetical protein
86	 45.04	+1	75251..75754	+	167	88608078	-	NSE_0088	-	hypothetical protein
87	 30.50	-2	75827..75967	+	46	88608666	-	NSE_0089	-	hypothetical protein
88	 44.31	0	76215..76706	+	163	88608774	-	NSE_0090	-	hypothetical protein
89	 34.75	-1	76795..76935	+	46	88608521	-	NSE_0091	-	hypothetical protein
90	 43.12	0	77129..77680	+	183	88608578	-	NSE_0092	-	hypothetical protein
91	 40.00	0	77709..77828	-	39	88608026	-	NSE_0093	-	hypothetical protein
92	 40.58	0	78013..78936	-	307	88608400	fmt	NSE_0094	-	methionyl-tRNA formyltransferase
93	 37.14	-1	79128..79232	+	34	88608514	-	NSE_0096	-	hypothetical protein
94	 41.51	0	79285..80091	-	268	88608610	nadE	NSE_0097	-	NAD+ synthetase
95	 37.78	0	80101..80190	+	29	88608337	-	NSE_0098	-	hypothetical protein
96	 38.10	0	80170..80379	-	69	88607972	-	NSE_0099	-	hypothetical protein
97	 39.68	0	80625..81254	+	209	88608073	lipB	NSE_0100	-	lipoate-protein ligase B
98	 44.21	0	81266..81973	+	235	88608670	truB	NSE_0101	-	tRNA pseudouridine synthase B
99	 44.83	+1	82049..82222	+	57	88608495	-	NSE_0102	-	hypothetical protein
100	 33.33	-2	82339..82587	+	82	88608609	-	NSE_0103	-	hypothetical protein
41.12	MEAN

3.36	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.