IslandPath Analysis: Burkholderia vietnamiensis G4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.68   STD DEV: 4.72
Burkholderia vietnamiensis G4 chromosome 2, complete sequence - 1..2411759
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.14	0	192..446	-	84	134292032	-	Bcep1808_3314	-	hypothetical protein
2	 70.98	0	545..2770	-	741	134292033	-	Bcep1808_3315	-	Amylo-alpha-1,6-glucosidase
3	 71.21	0	2910..3944	-	344	134292034	-	Bcep1808_3316	-	cell shape determining protein MreB
4	 69.72	0	4215..6668	+	817	134292035	-	Bcep1808_3317	-	patatin
5	 68.79	0	6681..7811	-	376	134292036	-	Bcep1808_3318	-	integral membrane sensor signal transduction histidine kinase
6	 67.37	0	7879..8589	-	236	134292037	-	Bcep1808_3319	-	two component transcriptional regulator
7	 66.89	0	8810..9724	+	304	134292038	-	Bcep1808_3320	-	glutaminase
8	 53.20	-2	10144..10440	+	98	134292039	-	Bcep1808_3321	-	hypothetical protein
9	 61.67	-1	10975..11595	-	206	134292040	-	Bcep1808_3322	-	lysine exporter protein LysE/YggA
10	 65.98	0	11746..13638	-	630	134292041	-	Bcep1808_3323	-	MerR family transcriptional regulator
11	 62.46	0	14075..15310	+	411	134292042	-	Bcep1808_3324	-	major facilitator transporter
12	 64.38	0	15336..16298	+	320	134292043	-	Bcep1808_3325	-	LysR family transcriptional regulator
13	 65.42	0	16387..17916	+	509	134292044	-	Bcep1808_3326	-	amidase
14	 65.64	0	17925..19286	+	453	134292045	-	Bcep1808_3327	-	D-serine dehydratase
15	 59.27	-1	19513..20337	+	274	134292046	-	Bcep1808_3328	-	arylesterase
16	 63.54	0	20586..20969	-	127	134292047	-	Bcep1808_3329	-	hypothetical protein
17	 67.45	0	21322..21957	+	211	134292048	-	Bcep1808_3330	-	isochorismatase hydrolase
18	 64.62	0	22025..22756	-	243	134292049	-	Bcep1808_3331	-	ribonuclease T2
19	 69.12	0	23081..24220	-	379	134292050	-	Bcep1808_3332	-	enoyl-CoA hydratase/isomerase
20	 71.46	+1	24217..25008	-	263	134292051	-	Bcep1808_3333	-	enoyl-CoA hydratase
21	 70.89	0	25008..25907	-	299	134292052	-	Bcep1808_3334	-	3-hydroxyisobutyrate dehydrogenase
22	 68.17	0	25926..27455	-	509	134292053	-	Bcep1808_3335	-	methylmalonate-semialdehyde dehydrogenase [acylating]
23	 68.24	0	27598..29310	-	570	134292054	-	Bcep1808_3336	-	AMP-dependent synthetase and ligase
24	 69.22	0	29534..30667	-	377	134292055	-	Bcep1808_3337	-	acyl-CoA dehydrogenase domain-containing protein
25	 69.86	0	30805..31839	+	344	134292056	-	Bcep1808_3338	-	AraC family transcriptional regulator
26	 74.90	+1	31951..33504	+	517	134292057	-	Bcep1808_3339	-	hypothetical protein
27	 66.15	0	33501..34274	+	257	134292058	-	Bcep1808_3340	-	SPFH domain-containing protein/band 7 family protein
28	 65.02	0	34335..35612	-	425	134292059	-	Bcep1808_3341	-	hypothetical protein
29	 64.93	0	36117..36404	+	95	134292060	-	Bcep1808_3342	-	hypothetical protein
30	 73.07	+1	36655..37029	+	124	134292061	-	Bcep1808_3343	-	hypothetical protein
31	 64.52	0	37193..37471	-	92	134292062	-	Bcep1808_3344	-	hypothetical protein
32	 65.98	0	38162..39463	+	433	134292063	-	Bcep1808_3345	-	xanthine/uracil/vitamin C permease
33	 71.51	+1	39555..40442	-	295	134292064	-	Bcep1808_3346	-	LysR family transcriptional regulator
34	 72.22	+1	40598..41137	+	179	134292065	-	Bcep1808_3347	-	hypothetical protein
35	 67.89	0	41150..41476	+	108	134292066	-	Bcep1808_3348	-	hypothetical protein
36	 70.95	0	41479..42342	+	287	134292067	-	Bcep1808_3349	-	beta-lactamase domain-containing protein
37	 64.93	0	42494..42781	-	95	134292068	-	Bcep1808_3350	-	hypothetical protein
38	 66.67	0	43024..43215	-	63	134292069	-	Bcep1808_3351	-	hypothetical protein
39	 71.93	+1	43524..45422	+	632	134292070	-	Bcep1808_3352	-	Fis family GAF modulated sigma54 specific transcriptional regulator
40	 69.77	0	45471..45824	+	117	134292071	-	Bcep1808_3353	-	ferredoxin
41	 70.37	0	45926..46303	+	125	134292072	-	Bcep1808_3354	-	hypothetical protein
42	 67.21	0	46521..46886	+	121	134292073	-	Bcep1808_3355	-	copper resistance protein CopC
43	 69.13	0	46939..47385	+	148	134292074	-	Bcep1808_3356	-	hypothetical protein
44	 68.36	0	47416..47592	+	58	134292075	-	Bcep1808_3357	-	hypothetical protein
45	 67.78	0	47679..48308	+	209	134292076	-	Bcep1808_3358	-	lysine exporter protein LysE/YggA
46	 71.12	0	48347..49672	-	441	134292077	-	Bcep1808_3359	-	serine/threonine protein kinase
47	 69.37	0	50285..52096	+	603	134292078	-	Bcep1808_3360	-	integral membrane sensor hybrid histidine kinase
48	 66.36	0	52716..53357	+	213	134292079	-	Bcep1808_3362	-	two component LuxR family transcriptional regulator
49	 68.37	0	53618..54907	-	429	134292080	-	Bcep1808_3363	-	hypothetical protein
50	 69.72	0	55438..56322	-	294	134292081	-	Bcep1808_3364	-	LysR family transcriptional regulator
51	 69.59	0	56399..57700	+	433	134292082	-	Bcep1808_3365	-	aminotransferase
52	 72.11	+1	57786..58649	+	287	134292083	-	Bcep1808_3366	-	AraC family transcriptional regulator
53	 67.89	0	58694..59101	+	135	134292084	-	Bcep1808_3367	-	hypothetical protein
54	 65.53	0	59133..59483	-	116	134292085	-	Bcep1808_3368	-	glyoxalase/bleomycin resistance protein/dioxygenase
55	 67.95	0	59575..60276	-	233	134292086	-	Bcep1808_3369	-	ABC transporter related
56	 67.57	0	60276..61049	-	257	134292087	livG	Bcep1808_3370	-	leucine/isoleucine/valine transporter ATP-binding subunit
57	 67.45	0	61046..62317	-	423	134292088	livM	Bcep1808_3371	-	leucine/isoleucine/valine transporter permease subunit
58	 66.67	0	62329..63255	-	308	134292089	-	Bcep1808_3372	-	inner-membrane translocator
59	 64.66	0	63458..64603	-	381	134292090	-	Bcep1808_3373	-	extracellular ligand-binding receptor
60	 65.59	0	65364..65921	+	185	134292091	-	Bcep1808_3374	-	hypothetical protein
61	 58.03	-1	65983..66480	-	165	134292092	-	Bcep1808_3375	-	hypothetical protein
62	 59.42	-1	66477..67649	-	390	134292093	-	Bcep1808_3376	-	hypothetical protein
63	 71.42	+1	68056..69297	+	413	134292094	-	Bcep1808_3377	-	D-amino-acid dehydrogenase
64	 67.66	0	69314..70120	-	268	134292095	-	Bcep1808_3378	-	GntR family transcriptional regulator
65	 71.94	+1	70147..71037	-	296	134292096	-	Bcep1808_3379	-	amidohydrolase 2
66	 65.07	0	71101..72042	-	313	134292097	-	Bcep1808_3380	-	periplasmic binding protein/LacI transcriptional regulator
67	 67.73	0	72132..73169	-	345	134292098	-	Bcep1808_3381	-	inner-membrane translocator
68	 68.96	0	73291..74727	-	478	134292099	-	Bcep1808_3382	-	ABC transporter related
69	 70.27	0	74740..75516	-	258	134292100	-	Bcep1808_3383	-	short chain dehydrogenase
70	 68.08	0	75600..76877	-	425	134292101	-	Bcep1808_3384	-	mandelate racemase/muconate lactonizing protein
71	 69.28	0	76901..77743	-	280	134292102	-	Bcep1808_3385	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
72	 70.20	0	77795..78559	-	254	134292103	-	Bcep1808_3386	-	short-chain dehydrogenase/reductase SDR
73	 69.76	0	79223..79513	+	96	134292104	-	Bcep1808_3387	-	hypothetical protein
74	 67.33	0	79867..80169	+	100	134292105	-	Bcep1808_3388	-	hypothetical protein
75	 70.76	0	80360..81556	-	398	134292106	-	Bcep1808_3389	-	gamma-butyrobetaine dioxygenase
76	 75.03	+1	81579..82535	-	318	134292107	-	Bcep1808_3390	-	alpha/beta hydrolase domain-containing protein
77	 69.33	0	82555..83043	-	162	134292108	-	Bcep1808_3391	-	thioesterase-like protein
78	 69.98	0	83050..84015	-	321	134292109	-	Bcep1808_3392	-	3-hydroxybutyryl-CoA dehydrogenase
79	 70.43	0	84106..85035	-	309	134292110	-	Bcep1808_3393	-	hypothetical protein
80	 65.93	0	85090..86043	-	317	134292111	-	Bcep1808_3394	-	substrate-binding region of ABC-type glycine betaine transport system
81	 68.72	0	86308..87279	-	323	134292112	-	Bcep1808_3395	-	LysR family transcriptional regulator
82	 67.54	0	87416..89716	+	766	134292113	-	Bcep1808_3396	-	malic enzyme
83	 67.01	0	89780..90934	-	384	134292114	-	Bcep1808_3397	-	aminotransferase, class V
84	 69.93	0	91085..92002	-	305	134292115	-	Bcep1808_3398	-	LysR family transcriptional regulator
85	 68.76	0	92139..92903	+	254	134292116	-	Bcep1808_3399	-	short-chain dehydrogenase/reductase SDR
86	 70.23	0	93273..94226	+	317	134292117	-	Bcep1808_3400	-	transcriptional regulator
87	 66.67	0	94282..95070	-	262	134292118	-	Bcep1808_3401	-	extracellular solute-binding protein
88	 73.97	+1	95120..96556	-	478	134292119	-	Bcep1808_3402	-	BFD/(2Fe-2S)-binding domain-containing protein
89	 72.00	+1	96553..96852	-	99	134292120	-	Bcep1808_3403	-	hypothetical protein
90	 71.38	0	96845..97969	-	374	134292121	-	Bcep1808_3404	-	FAD dependent oxidoreductase
91	 70.38	0	98119..99033	+	304	134292122	-	Bcep1808_3405	-	LysR family transcriptional regulator
92	 67.49	0	99167..99529	+	120	134292123	-	Bcep1808_3406	-	hypothetical protein
93	 72.26	+1	99536..100786	-	416	134292124	-	Bcep1808_3407	-	major facilitator transporter
94	 64.91	0	101044..102183	-	379	134292125	-	Bcep1808_3408	-	porin
95	 69.95	0	102437..103411	-	324	134292126	-	Bcep1808_3409	-	substrate-binding region of ABC-type glycine betaine transport system
96	 70.18	0	103456..104991	-	511	134292127	-	Bcep1808_3410	-	sulfatase
97	 71.95	+1	105191..106117	+	308	134292128	-	Bcep1808_3411	-	LysR family transcriptional regulator
98	 65.88	0	106299..107183	+	294	134292129	-	Bcep1808_3412	-	formyltetrahydrofolate deformylase
99	 64.86	0	107308..108963	-	551	134292130	-	Bcep1808_3413	-	amino acid permease-associated region
100	 64.81	0	109199..110062	-	287	134292131	-	Bcep1808_3414	-	substrate-binding region of ABC-type glycine betaine transport system
66.68	MEAN

4.72	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.