IslandPath Analysis: Burkholderia cenocepacia J2315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.38   STD DEV: 4.20
Burkholderia cenocepacia J2315 chromosome 2, complete genome - 1..3217062
2807 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.17	0	230..829	+	199	206561869	-	BCAM0001	-	putative sigma factor
2	 71.35	0	831..1022	+	63	206561870	-	BCAM0001A	-	hypothetical protein
3	 64.15	0	1160..1516	-	118	206561871	-	BCAM0002	-	ArsC family arsenate reductase
4	 60.94	-1	2538..3200	+	220	206561872	-	BCAM0003	-	putative partition protein ParA
5	 62.05	-1	3224..4285	+	353	206561873	-	BCAM0004	-	putative partitioning protein ParB
6	 65.35	0	4378..5745	-	455	206561874	-	BCAM0005	-	putative replication protein
7	 54.93	-2	6784..6996	-	70	206561875	-	BCAM0005A	-	hypothetical protein
8	 64.04	0	7550..8731	+	393	206561876	-	BCAM0006	-	hypothetical protein
9	 63.92	0	8868..9887	-	339	206561877	-	BCAM0007	-	putative phage integrase
10	 66.40	0	9990..10367	-	125	206561878	-	BCAM0008	-	hypothetical protein
11	 70.42	0	10509..11120	-	203	206561879	-	BCAM0009	-	putative DNA-binding protein
12	 66.42	0	11279..12478	+	399	206561880	kbl	BCAM0010	-	2-amino-3-ketobutyrate coenzyme A ligase
13	 65.11	0	12492..13520	+	342	206561881	tdh	BCAM0011	-	threonine 3-dehydrogenase
14	 68.64	0	13918..14322	-	134	206561882	-	BCAM0012	-	hypothetical protein
15	 71.05	0	14331..14969	-	212	206561883	-	BCAM0013	-	putative acetyltransferase-GNAT family
16	 68.15	0	15152..15757	+	201	206561884	-	BCAM0014	-	TetR family regulatory protein
17	 65.62	0	15822..16301	+	159	206561885	-	BCAM0015	-	hypothetical protein
18	 67.50	0	16765..17850	-	361	206561886	-	BCAM0016	-	tartrate dehydrogenase
19	 69.59	0	17966..18889	+	307	206561887	-	BCAM0017	-	LysR family regulatory protein
20	 69.64	0	18955..19896	-	313	206561888	argC	BCAM0018	-	N-acetyl-gamma-glutamyl-phosphate reductase
21	 71.41	0	20018..20902	+	294	206561889	-	BCAM0019	-	LysR family regulatory protein
22	 69.17	0	20953..21471	-	172	206561890	-	BCAM0020	-	hypothetical protein
23	 67.00	0	21478..22662	-	394	206561891	-	BCAM0021	-	putative patatin-like phospholipase
24	 64.25	0	22692..23477	-	261	206561892	-	BCAM0022	-	putative D-beta-hydroxybutyrate dehydrogenase
25	 63.56	0	23530..24270	-	246	206561893	adc	BCAM0023	-	acetoacetate decarboxylase
26	 70.45	0	24705..25286	+	193	206561894	-	BCAM0024	-	putative undecaprenyl-diphosphatase
27	 67.09	0	25311..25544	-	77	206561895	-	BCAM0025	-	hypothetical protein
28	 71.17	0	25696..26517	-	273	206561896	-	BCAM0026	-	putative siderophore-interacting protein
29	 69.49	0	26556..27263	-	235	206561897	-	BCAM0027	-	PadR family regulatory protein
30	 71.47	0	28013..29074	+	353	206561898	-	BCAM0028	-	putative FHA-domain protein
31	 72.12	+1	29092..33123	+	1343	206561899	-	BCAM0029	-	putative protein kinase
32	 62.03	-1	33157..33501	+	114	206561900	-	BCAM0030	-	hypothetical protein
33	 62.81	-1	33518..33880	+	120	206561901	-	BCAM0031	-	hypothetical protein
34	 70.06	0	33974..36214	+	746	206561902	-	BCAM0032	-	hypothetical protein
35	 67.31	0	36282..37373	-	363	206561903	-	BCAM0033	-	putative outer membrane protein
36	 72.06	+1	37551..38273	-	240	206561904	-	BCAM0034	-	putative short-chain dehydrogenase
37	 70.68	0	38251..39372	-	373	206561905	-	BCAM0035	-	putative zinc-binding dehydrogenase
38	 70.11	0	39374..40678	-	434	206561906	-	BCAM0036	-	Major Facilitator Superfamily protein
39	 61.99	-1	40697..41230	-	177	206561907	dad	BCAM0037	-	2,4'-dihydroxyacetophenone dioxygenase
40	 69.52	0	41410..42390	+	326	206561908	-	BCAM0038	-	AraC family regulatory protein
41	 71.84	+1	42486..44051	-	521	206561909	-	BCAM0039	-	putative alcohol dehydrogenase
42	 69.56	0	44210..45178	-	322	206561910	-	BCAM0040	-	AraC family regulatory protein
43	 68.78	0	45382..46185	-	267	206561911	-	BCAM0041	-	putative lipoprotein
44	 67.62	0	46349..47296	-	315	206561912	-	BCAM0042	-	putative aldo/keto reductase
45	 68.98	0	47652..50156	+	834	206561913	-	BCAM0043	-	hypothetical protein
46	 70.65	0	50170..51072	+	300	206561914	-	BCAM0044	-	hypothetical protein
47	 63.86	0	51129..51806	+	225	206561915	-	BCAM0045	-	putative lipoprotein
48	 66.38	0	51843..53576	+	577	206561916	-	BCAM0046	-	hypothetical protein
49	 69.08	0	53657..54277	-	206	206561917	-	BCAM0047	-	putative transporter-LysE family
50	 69.02	0	54388..55281	+	297	206561918	-	BCAM0048	-	LysR family regulatory protein
51	 66.67	0	55330..56076	-	248	206561919	-	BCAM0049	-	CRP family regulatory protein
52	 68.59	0	56180..56647	-	155	206561920	-	BCAM0050	-	universal stress-related protein
53	 69.85	0	57156..57563	-	135	206561921	-	BCAM0050a	-	hypothetical protein
54	 61.54	-1	57842..58075	+	77	206561922	-	BCAM0052	-	hypothetical protein
55	 68.30	0	58213..59133	+	306	206561923	srpH	BCAM0053	-	serine acetyltransferase
56	 69.28	0	59296..60099	-	267	206561924	-	BCAM0054	-	putative short-chain dehydrogenase
57	 65.88	0	60099..60734	-	211	206561925	folE	BCAM0055	-	GTP cyclohydrolase I
58	 69.26	0	60830..61756	-	308	206561926	-	BCAM0056	-	LysR family regulatory protein
59	 67.23	0	61873..63105	+	410	206561927	pobA	BCAM0057	-	p-hydroxybenzoate hydroxylase
60	 67.09	0	63250..63966	+	238	206561928	pcaI	BCAM0058	-	3-oxoadipate CoA-transferase subunit A
61	 66.36	0	63986..64642	+	218	206561929	pcaJ	BCAM0059	-	3-oxoadipate CoA-transferase subunit B
62	 71.67	+1	64731..66089	+	452	206561930	pcaB	BCAM0060	-	3-carboxy-cis,cis-muconate cycloisomerase
63	 68.58	0	66106..66891	+	261	206561931	-	BCAM0061	-	putative 3-oxoadipate enol-lactonase I
64	 63.82	0	66902..67288	+	128	206561932	pcaC	BCAM0062	-	4-carboxymuconolactone decarboxylase
65	 67.77	0	67483..68841	+	452	206561933	-	BCAM0063	-	putative 4-hydroxybenzoate transporter
66	 64.66	0	68974..69222	-	82	206561934	-	BCAM0064	-	hypothetical protein
67	 64.89	0	69331..69948	-	205	206561935	-	BCAM0065	-	putative transporter-LysE family
68	 54.24	-2	71131..73110	+	659	206561936	-	BCAM0066	-	putative lipoprotein
69	 53.92	-2	73112..73825	+	237	206561937	-	BCAM0067	-	putative short chain dehydrogenase
70	 57.00	-2	73803..75209	+	468	206561938	-	BCAM0068	-	Major Facilitator Superfamily protein
71	 55.44	-2	75236..76918	+	560	206561939	-	BCAM0069	-	hypothetical protein
72	 56.20	-2	76940..77818	+	292	206561940	-	BCAM0070	-	putative hydrolase
73	 56.15	-2	77811..78989	+	392	206561941	-	BCAM0071	-	puatative mandelate racemase/muconate lactonizing enzyme
74	 54.13	-2	78956..80734	+	592	206561942	-	BCAM0072	-	putative thiamine pyrophosphate enzyme
75	 55.10	-2	80783..81664	+	293	206561943	-	BCAM0073	-	hypothetical protein
76	 57.18	-2	81873..83000	+	375	206561944	-	BCAM0074	-	hypothetical protein
77	 55.50	-2	83007..83588	-	193	206561945	-	BCAM0075	-	TetR family regulatory protein
78	 62.89	-1	84022..84789	-	255	206561946	-	BCAM0076	-	TetR family regulatory protein
79	 66.49	0	84902..86614	+	570	206561947	-	BCAM0077	-	putative flavoprotein monooxygenase
80	 64.99	0	86622..87692	+	356	206561948	-	BCAM0078	-	putative dioxygenase
81	 61.86	-1	87729..88685	+	318	206561949	-	BCAM0079	-	putative fumarylacetoacetate hydrolase family protein
82	 64.98	0	88682..90643	+	653	206561950	-	BCAM0080	-	putative AMP-binding enzyme
83	 63.22	0	90857..91582	+	241	206561951	-	BCAM0081	-	putative outer membrane protein-OmpW family
84	 66.12	0	91858..92592	-	244	206561952	-	BCAM0082	-	putative polysaccharide deacetylase
85	 60.49	-1	92616..93182	-	188	206561953	-	BCAM0083	-	hypothetical protein
86	 68.57	0	93173..94327	-	384	206561954	-	BCAM0084	-	putative glycosyl transferase
87	 67.00	0	94684..95280	+	198	206561955	-	BCAM0085	-	TetR family regulatory protein
88	 64.90	0	95627..96925	+	432	206561956	-	BCAM0086	-	putative sodium:dicarboxylate symporter family protein
89	 67.13	0	97379..99313	+	644	206561957	-	BCAM0087	-	putative lipoprotein
90	 67.03	0	99606..100424	+	272	206561958	-	BCAM0088	-	putative peptidyl-prolyl cis-trans isomerase
91	 68.04	0	100455..100892	-	145	206561959	-	BCAM0089	-	putative acetyltransferase-GNAT family
92	 64.43	0	100935..101738	-	267	206561960	-	BCAM0090	-	hypothetical protein
93	 70.15	0	102192..103484	+	430	206561961	-	BCAM0091	-	hypothetical protein
94	 68.87	0	103498..104313	+	271	206561962	-	BCAM0092	-	hypothetical protein
95	 72.92	+1	104321..105343	-	340	206561963	-	BCAM0093	-	MerR family regulatory protein
96	 72.67	+1	105426..106892	-	488	206561964	xylB	BCAM0094	-	xylulose kinase
97	 65.71	0	106889..107824	-	311	206561965	-	BCAM0095	-	AraC family regulatory protein
98	 70.77	0	107854..109047	-	397	206561966	-	BCAM0096	-	ABC transporter ATP-binding protein
99	 71.21	0	109051..110085	-	344	206561967	-	BCAM0097	-	D-xylulose reductase
100	 67.65	0	110096..110911	-	271	206561968	-	BCAM0098	-	putative ABC transporter system permease
67.38	MEAN

4.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.