IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.01   STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.92	-1	174..1331	+	385	33239453	dnaN	Pro0001	-	DNA polymerase III subunit beta
2	 30.52	-1	1333..2079	+	248	33239454	-	Pro0002	-	hypothetical protein
3	 33.62	0	2082..4487	+	801	33239455	purL	Pro0003	-	phosphoribosylformylglycinamidine synthase II
4	 33.47	0	4530..5987	+	485	33239456	purF	Pro0004	-	amidophosphoribosyltransferase
5	 31.52	-1	5992..8478	-	828	33239457	gyrA	Pro0005	-	Type IIA topoisomerase, A subunit, ParC
6	 29.79	-1	8558..9433	-	291	33239458	-	Pro0006	-	TPR repeat-containing protein
7	 33.23	0	9433..10395	-	320	33239459	-	Pro0007	-	hypothetical protein
8	 36.27	0	10521..11270	+	249	33239460	-	Pro0008	-	hypothetical protein
9	 31.45	-1	11292..11927	+	211	33239461	nusB	Pro0009	-	transcription antitermination protein NusB
10	 34.88	0	11966..13261	+	431	33239462	ftsY	Pro0010	-	Signal recognition particle GTPase, FtsY
11	 37.23	0	13310..14719	+	469	33239463	rsbU	Pro0011	-	Serine phosphatase RsbU
12	 34.13	0	14770..16158	+	462	33239464	argH	Pro0012	-	argininosuccinate lyase
13	 60.08	+2	16279..17037	+	252	33239465	-	Pro0013	-	RNA-binding protein
14	 34.83	0	17049..18050	-	333	33239466	-	Pro0014	-	tRNA-dihydrouridine synthase A
15	 37.52	0	18102..18602	+	166	33239467	-	Pro0015	-	hypothetical protein
16	 36.35	0	18707..19435	+	242	33239468	grpE	Pro0016	-	molecular chaperone GrpE, heat shock protein
17	 40.19	0	19481..20617	+	378	33239469	dnaJ	Pro0017	-	DnaJ-class molecular chaperone
18	 31.17	-1	20617..20847	+	76	33239470	sirA	Pro0018	-	redox protein
19	 30.43	-1	20834..21763	+	309	33239471	-	Pro0019	-	GTPase
20	 40.80	0	21747..22094	-	115	33239472	-	Pro0020	-	hypothetical protein
21	 36.72	0	22128..23012	-	294	33239473	murB	Pro0021	-	UDP-N-acetylmuramate dehydrogenase
22	 31.29	-1	23017..24435	-	472	33239474	murC	Pro0022	-	UDP-N-acetylmuramate-alanine ligase
23	 38.71	0	24618..25640	+	340	33239475	gap2	Pro0023	-	glyceraldehyde 3-phosphate dehydrogenase(NADP+)(phosphorylating)
24	 38.52	0	25676..26677	-	333	33239476	thiL	Pro0024	-	thiamine monophosphate kinase
25	 35.65	0	26670..27746	-	358	33239477	ppiB	Pro0025	-	cyclophilin-type peptidyl-prolyl cis-trans isomerase
26	 39.22	0	27810..28370	+	186	33239478	efp	Pro0026	-	elongation factor P
27	 40.70	0	28376..28891	+	171	33239479	accB	Pro0027	-	biotin carboxyl carrier protein
28	 37.90	0	28895..29923	-	342	33239480	pdxA	Pro0028	-	4-hydroxythreonine-4-phosphate dehydrogenase
29	 34.69	0	29973..30119	+	48	33239481	-	Pro0029	-	hypothetical protein
30	 38.37	0	30137..31030	-	297	33239482	wcaG	Pro0030	-	NAD dependent epimerase/dehydratase
31	 35.59	0	31062..31283	+	73	33239483	-	Pro0031	-	hypothetical protein
32	 36.39	0	31287..31679	-	130	33239484	mcrA	Pro0032	-	McrA/HNH family nuclease
33	 36.74	0	31805..32068	-	87	33239485	-	Pro0033	-	hypothetical protein
34	 32.26	-1	32121..32492	+	123	33239486	-	Pro0034	-	hypothetical protein
35	 36.81	0	32863..33150	+	95	33239487	-	Pro0035	-	hypothetical protein
36	 34.55	0	33189..34343	-	384	33239488	-	Pro0036	-	soluble hydrogenase small subunit
37	 35.25	0	34418..35563	+	381	33239489	cbiD	Pro0037	-	cobalt-precorrin-6A synthase
38	 37.74	0	35617..37203	+	528	33239490	guaA	Pro0038	-	bifunctional GMP synthase/glutamine amidotransferase protein
39	 39.38	0	38158..38769	+	203	33239491	-	Pro0039	-	hypothetical protein
40	 32.78	-1	38779..39138	+	119	33239492	-	Pro0040	-	hypothetical protein
41	 36.13	0	39169..40956	+	595	33239493	ftsI	Pro0041	-	putative penicillin-binding protein
42	 34.19	0	40976..41209	-	77	33239494	-	Pro0042	-	hypothetical protein
43	 39.70	0	41413..41946	-	177	33239495	-	Pro0043	-	putative reductase
44	 36.80	0	41993..43837	-	614	33239496	dfa3	Pro0044	-	diflavin flavoprotein
45	 38.30	0	43837..45609	-	590	33239497	dfa1	Pro0045	-	diflavin flavoprotein
46	 35.63	0	45725..46594	-	289	33239498	-	Pro0046	-	hypothetical protein
47	 36.88	0	46600..49788	-	1062	33239499	hepA	Pro0047	-	SNF2 family DNA/RNA helicase
48	 38.86	0	49984..52662	+	892	33239500	alaS	Pro0048	-	alanyl-tRNA synthetase
49	 37.65	0	52665..54611	-	648	33239501	speA	Pro0049	-	arginine decarboxylase
50	 39.57	0	54704..55216	+	170	33239502	ndk	Pro0050	-	nucleoside diphosphate kinase
51	 38.81	0	55259..56371	-	370	33239503	dadA	Pro0051	-	glycine/D-amino acid oxidase family protein
52	 36.04	0	56478..57956	+	492	33239504	gatB	Pro0052	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
53	 30.17	-1	57964..58596	-	210	33239505	coaE	Pro0053	-	dephospho-CoA kinase
54	 38.08	0	58642..59883	+	413	33239506	argJ	Pro0054	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
55	 42.34	+1	60286..60918	+	210	33239507	hupE	Pro0055	-	hydrogenase accessory membrane protein
56	 32.46	-1	61067..62899	-	610	33239508	mdlB	Pro0056	-	ABC-type multidrug transport system ATPase and permease components
57	 31.05	-1	63339..64562	+	407	33239509	rfaG	Pro0057	-	glycosyltransferase
58	 31.25	-1	64567..66531	-	654	33239510	asnB	Pro0058	-	asparagine synthetase
59	 30.21	-1	66592..68190	+	532	33239511	arnT	Pro0059	-	glycosyl transferase family protein
60	 34.27	0	68269..69663	+	464	33239512	wcaA	Pro0060	-	glycosyltransferase
61	 31.32	-1	69664..70605	+	313	33239513	-	Pro0061	-	hypothetical protein
62	 29.96	-1	70715..73054	+	779	33239514	arnT	Pro0062	-	glycosyl transferase family protein
63	 38.83	0	73141..74268	+	375	33239515	gmd	Pro0063	-	GDP-D-mannose dehydratase
64	 32.15	-1	74274..75287	+	337	33239516	wcaG	Pro0064	-	NAD dependent epimerase/dehydratase
65	 33.25	0	75660..76808	+	382	33239517	-	Pro0065	-	putative RNA methylase
66	 33.85	0	76805..77191	-	128	33239518	-	Pro0066	-	hypothetical protein
67	 39.78	0	77192..77656	-	154	33239519	-	Pro0067	-	hypothetical protein
68	 43.94	+1	77901..78032	+	43	33239520	-	Pro0068	-	hypothetical protein
69	 26.57	-2	78177..78383	+	68	33239521	-	Pro0069	-	hypothetical protein
70	 40.42	0	78441..78821	+	126	33239522	-	Pro0070	-	hypothetical protein
71	 36.88	0	78939..82493	+	1184	33239523	smc	Pro0071	-	chromosome segregation ATPase
72	 37.24	0	82558..83631	+	357	33239524	-	Pro0072	-	PRC-barrel domain-containing protein
73	 35.96	0	83662..84957	-	431	33239525	-	Pro0073	-	hypothetical protein
74	 40.81	0	85161..86510	+	449	33239526	accC	Pro0074	-	acetyl-CoA carboxylase biotin carboxylase subunit
75	 34.89	0	86523..86843	-	106	33239527	-	Pro0075	-	YGGT family membrane protein
76	 47.62	+2	86930..87097	+	55	33239528	psbX	Pro0076	-	photosystem II protein X PsbX
77	 40.79	0	87184..88242	+	352	33239529	-	Pro0077	-	hypothetical protein
78	 38.96	0	88280..88528	-	82	33239530	hli5	Pro0078	-	high light inducible protein hli5
79	 33.03	0	88537..90525	-	662	33239531	-	Pro0079	-	ABC transporter ATP-binding protein
80	 36.26	0	90732..91073	-	113	33239532	hit	Pro0080	-	HIT family hydrolase
81	 36.76	0	91268..91879	-	203	33239533	def	Pro0081	-	peptide deformylase
82	 33.84	0	91942..93900	+	652	33239534	DAP2	Pro0082	-	dipeptidyl aminopeptidase family protein
83	 32.93	-1	93897..95150	-	417	33239535	csdB	Pro0083	-	selenocysteine lyase
84	 29.80	-1	95159..96376	-	405	33239536	sufB	Pro0084	-	ABC-type transport system involved in Fe-S cluster assembly permease component
85	 32.58	-1	96384..97175	-	263	33239537	sufC	Pro0085	-	ABC-type transport system involved in Fe-S cluster assembly ATPase component
86	 33.89	0	97172..98614	-	480	33239538	sufB	Pro0086	-	cysteine desulfurase activator complex subunit SufB
87	 36.77	0	98697..99074	+	125	33239539	-	Pro0087	-	hypothetical protein
88	 39.16	0	99371..100468	+	365	33239540	-	Pro0088	-	hypothetical protein
89	 40.94	0	100490..100660	+	56	33239541	-	Pro0089	-	hypothetical protein
90	 39.06	0	100718..102376	+	552	33239542	pgm	Pro0090	-	phosphoglucomutase
91	 38.93	0	102410..103750	+	446	33239543	mGS1	Pro0091	-	recombination factor protein RarA
92	 31.35	-1	103816..104472	-	218	33239544	-	Pro0092	-	putative 4'-phosphopantetheinyl transferase family protein
93	 35.26	0	104471..104938	+	155	33239545	ccp	Pro0093	-	peroxiredoxin
94	 38.46	0	104886..105626	-	246	33239546	-	Pro0094	-	transcriptional regulator
95	 36.86	0	105629..106393	-	254	33239547	cysH	Pro0095	-	phosphoadenosine phosphosulfate reductase
96	 35.78	0	106440..107624	+	394	33239548	ndh	Pro0096	-	NADH dehydrogenase, FAD-containing subunit
97	 39.70	0	107726..109546	+	606	33239549	citT	Pro0097	-	putative sodium/sulfate transporter, DASS family
98	 37.46	0	109600..111003	+	467	33239550	trkG	Pro0098	-	putative sodium transporter, Trk family
99	 40.71	0	111000..111731	+	243	33239551	trkA	Pro0099	-	putative potassium channel, VIC family
100	 38.01	0	111732..112865	+	377	33239552	anmK	Pro0100	-	anhydro-N-acetylmuramic acid kinase
37.01	MEAN

3.99	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.