IslandPath Analysis: Brucella melitensis 16M



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.58   STD DEV: 3.72
Brucella melitensis 16M chromosome I, complete sequence - 1..2117144
2059 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 55.56	0	192..1217	+	341	17986285	hemE	BMEI0001	-	uroporphyrinogen decarboxylase
2	 53.76	-1	1286..1750	+	154	17986286	-	BMEI0002	-	cytochrome functioning/assembly related protein
3	 55.21	0	2132..3397	+	421	17986287	rho	BMEI0003	-	transcription termination factor Rho
4	 54.40	0	3482..3856	-	124	17986288	-	BMEI0004	-	putative cytoplasmic protein
5	 55.23	0	3984..5504	-	506	17986289	-	BMEI0005	-	thymidylate kinase
6	 52.90	-1	5526..6854	+	442	17986290	trmE	BMEI0006	-	tRNA modification GTPase TrmE
7	 56.15	0	7015..8991	+	658	17986291	-	BMEI0007	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
8	 54.21	0	8988..9629	+	213	17986292	gidB	BMEI0008	-	glucose-inhibited division protein B
9	 54.72	0	9643..10479	+	278	17986293	-	BMEI0009	-	chromosome partitioning protein PARA
10	 56.24	0	10523..11404	+	293	17986294	-	BMEI0010	-	chromosome partitioning protein PARB
11	 59.96	0	11498..12541	-	347	17986295	holA	BMEI0011	-	DNA polymerase III subunit delta
12	 59.62	0	12703..13497	-	264	17986296	-	BMEI0012	-	ABC transporter ATP-binding protein
13	 58.64	0	13494..14378	-	294	17986297	-	BMEI0013	-	ABC transporter membrane protein
14	 48.39	-2	14633..14818	+	61	17986298	-	BMEI0014	-	hypothetical protein
15	 60.53	0	15022..15966	-	314	17986299	-	BMEI0015	-	ABC transporter substrate-binding protein
16	 55.71	0	16050..16259	+	69	17986300	-	BMEI0016	-	hypothetical protein
17	 59.53	0	16256..17278	+	340	17986301	-	BMEI0017	-	alkanal monooxygenase subunit alpha
18	 58.80	0	17312..18481	-	389	17986302	-	BMEI0018	-	putative cytoplasmic protein
19	 58.62	0	18672..19790	+	372	17986303	-	BMEI0019	-	LACI-family transcription regulator
20	 60.08	0	19769..20770	+	333	17986304	-	BMEI0020	-	glucose-fructose oxidoreductase precursor
21	 58.42	0	20776..22266	+	496	17986305	-	BMEI0021	-	acetoacetyl-COA transferase subunit alpha
22	 59.41	0	22268..22639	+	123	17986306	-	BMEI0022	-	3-hydroxybutyryl-COA dehydratase
23	 62.77	+1	22584..23045	+	153	17986307	-	BMEI0023	-	3-hydroxybutyryl-COA dehydratase
24	 59.83	0	23039..24559	+	506	17986308	-	BMEI0024	-	L-sorbosone dehydrogenase, NAD(P) dependent
25	 59.12	0	24572..26056	+	494	17986309	-	BMEI0025	-	L-sorbose dehydrogenase (FAD)
26	 60.26	0	26053..26817	+	254	161511167	fabG	BMEI0026	-	3-ketoacyl-(acyl-carrier-protein) reductase
27	 56.56	0	26783..27148	+	121	17986311	-	BMEI0027	-	L-sorbose dehydrogenase [FAD]
28	 58.99	0	27042..28109	+	355	17986312	-	BMEI0028	-	L-sorbose dehydrogenase [FAD]
29	 58.62	0	28116..28463	+	115	17986313	-	BMEI0029	-	L-sorbose dehydrogenase [FAD]
30	 46.09	-2	28520..28864	-	114	17986314	-	BMEI0030	-	putative cytoplasmic protein
31	 48.74	-2	29014..29331	-	105	17986315	-	BMEI0031	-	putative cytoplasmic protein
32	 59.22	0	29555..30319	+	254	17986316	-	BMEI0032	-	3-oxoacyl-(acyl-carrier protein) reductase
33	 60.67	0	30518..31351	-	277	17986317	-	BMEI0033	-	N-acyl-L-amino acid amidohydrolase
34	 54.71	0	31406..31681	-	91	17986318	-	BMEI0034	-	N-acyl-L-amino acid amidohydrolase
35	 60.83	0	31979..33091	+	370	17986319	-	BMEI0035	-	D-alanyl-D-alanine carboxypeptidase
36	 59.73	0	33093..34259	+	388	17986320	-	BMEI0036	-	COBW protein
37	 54.65	0	34277..34534	-	85	17986321	-	BMEI0037	-	putative transcriptional regulatory protein
38	 58.58	0	34513..35724	-	403	17986322	-	BMEI0038	-	hypothetical protein
39	 59.33	0	35946..36899	-	317	17986323	-	BMEI0039	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
40	 59.35	0	37038..37967	-	309	17986324	xerD	BMEI0040	-	site-specific tyrosine recombinase XerD
41	 55.19	0	37967..38149	-	60	17986325	-	BMEI0041	-	hypothetical protein
42	 59.41	0	38388..38897	+	169	17986326	-	BMEI0042	-	shikimate kinase
43	 60.33	0	38990..40126	+	378	17986327	aroB	BMEI0043	-	3-dehydroquinate synthase
44	 59.33	0	40190..41497	+	435	17986328	-	BMEI0044	-	CBS domain-containing protein
45	 57.93	0	41522..41830	-	102	17986329	-	BMEI0045	-	morphology/transcriptional regulatory  protein BolA
46	 49.49	-2	41829..42026	+	65	17986330	-	BMEI0046	-	hypothetical protein
47	 56.83	0	42023..42652	+	209	17986331	-	BMEI0047	-	DnaJ family molecular chaperone
48	 63.64	+1	42646..42843	+	65	17986332	-	BMEI0048	-	hypothetical protein
49	 58.21	0	42897..43925	+	342	17986333	-	BMEI0049	-	CobS protein
50	 61.62	+1	44033..45934	+	633	17986334	-	BMEI0050	-	CobT protein
51	 41.49	-2	46200..47192	-	330	17986335	-	BMEI0051	-	hypothetical protein
52	 45.47	-2	47219..47968	-	249	17986336	-	BMEI0052	-	hypothetical protein
53	 60.81	0	48375..50816	-	813	17986337	-	BMEI0053	-	cation-transporting ATPase PACS
54	 58.87	0	50893..51315	+	140	17986338	-	BMEI0054	-	mercuric resistance operon regulatory protein
55	 54.77	0	51427..52149	-	240	17986339	-	BMEI0055	-	hypothetical protein
56	 59.52	0	52604..52897	+	97	17986340	rpmB	BMEI0056	-	50S ribosomal protein L28
57	 58.48	0	52977..53648	+	223	17986341	-	BMEI0057	-	hypothetical protein
58	 51.03	-1	53789..57913	-	1374	17986342	-	BMEI0058	-	extracellular serine protease
59	 40.56	-2	58718..58966	-	82	17986343	-	BMEI0059	-	hypothetical protein
60	 42.89	-2	59103..60305	+	400	17986344	-	BMEI0060	-	hypothetical protein
61	 42.22	-2	60314..60673	+	119	17986345	-	BMEI0061	-	hypothetical protein
62	 42.69	-2	61107..62186	+	359	17986346	-	BMEI0062	-	hypothetical protein
63	 48.04	-2	62656..63702	+	348	17986347	-	BMEI0063	-	hypothetical protein
64	 44.67	-2	63731..64030	-	99	17986348	-	BMEI0064	-	hypothetical protein
65	 61.17	0	64091..64636	-	181	17986349	-	BMEI0065	-	putative cytoplasmic protein
66	 55.99	0	64844..65527	+	227	17986350	-	BMEI0066	-	two component response regulator
67	 61.90	+1	65562..66023	+	153	17986351	-	BMEI0067	-	cAMP-dependent protein kinase regulatory subunit
68	 57.24	0	66029..66898	-	289	17986352	-	BMEI0068	-	exodeoxyribonuclease III
69	 55.72	0	66938..67540	-	200	17986353	-	BMEI0069	-	outer membrane lipoproteins carrier protein precursor
70	 58.52	0	68014..68700	-	228	17986354	-	BMEI0070	-	aquaporin Z
71	 54.58	0	69178..69450	+	90	17986355	-	BMEI0071	-	hypothetical protein
72	 60.15	0	69759..70418	+	219	17986356	-	BMEI0072	-	cell division ATP-binding protein FTSE
73	 60.88	0	70411..71412	+	333	17986357	-	BMEI0073	-	cell division protein FTSX
74	 55.78	0	71559..72311	+	250	17986358	-	BMEI0074	-	hypothetical protein
75	 57.36	0	72370..73272	+	300	17986359	-	BMEI0075	-	1-acyl-SN-glycerol-3-phosphate acyltransferase
76	 55.18	0	73425..73955	+	176	17986360	-	BMEI0076	-	inorganic pyrophosphatase
77	 57.77	0	74749..75321	-	190	17986361	-	BMEI0077	-	cation transport protein CHAC
78	 57.65	0	75521..76540	+	339	17986362	-	BMEI0078	-	hypothetical protein
79	 60.46	0	76509..77474	-	321	17986363	-	BMEI0079	-	cyclohexadienyl dehydrogenase
80	 59.08	0	77479..78585	-	368	17986364	-	BMEI0080	-	histidinol-phosphate aminotransferase
81	 61.92	+1	78582..79508	-	308	17986365	-	BMEI0081	-	methyltransferase
82	 55.68	0	79657..80193	+	178	17986366	-	BMEI0082	-	hypoxanthine-guanine phosphoribosyltransferase
83	 61.01	0	80233..82635	-	800	17986367	-	BMEI0083	-	hypothetical protein
84	 61.14	0	82965..84230	-	421	17986368	-	BMEI0084	-	diaminopimelate decarboxylase
85	 54.58	0	84258..84530	-	90	17986369	-	BMEI0085	-	hypothetical protein
86	 59.53	0	84551..85951	-	466	17986370	-	BMEI0086	-	argininosuccinate lyase
87	 58.55	0	86266..86721	+	151	17986371	-	BMEI0087	-	thiol:disulfide interchange protein TLPA
88	 60.91	0	86729..87214	-	161	17986372	-	BMEI0088	-	hypothetical protein
89	 56.68	0	87232..88092	-	286	17986373	-	BMEI0089	-	ribonuclease BN
90	 59.93	0	88202..89092	+	296	17986374	-	BMEI0090	-	short chain dehydrogenase
91	 51.11	-1	89191..89325	+	44	17986375	-	BMEI0091	-	hypothetical protein
92	 60.42	0	89285..89956	+	223	17986376	-	BMEI0092	-	adenosylcobalamin-dependent diol dehydratase gamma subunit
93	 58.74	0	90052..90783	-	243	17986377	-	BMEI0093	-	radical SAM domain protein ExsD
94	 55.48	0	90725..91171	-	148	17986378	-	BMEI0094	-	vacuolar ATP synthase 16 KD proteolipid subunit
95	 59.51	0	91171..91869	-	232	17986379	-	BMEI0095	-	succinoglycan biosynthesis regulator
96	 58.23	0	92205..92951	+	248	17986380	-	BMEI0096	-	electron transfer flavoprotein subunit beta
97	 60.36	0	92987..94033	+	348	17986381	-	BMEI0097	-	electron transfer flavoprotein subunit alpha
98	 50.90	-1	94144..94365	+	73	17986382	-	BMEI0098	-	hypothetical protein
99	 57.31	0	94517..95392	+	291	17986383	-	BMEI0099	-	3-hydroxybutyryl-CoA dehydrogenase
100	 50.60	-1	95552..95800	+	82	17986384	-	BMEI0100	-	hypothetical protein
57.58	MEAN

3.72	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.