IslandPath Analysis: Mycoplasma hyopneumoniae 232



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 4.26
Mycoplasma hyopneumoniae 232, complete genome - 1..892758
691 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 26.87	0	1..1392	+	463	54019970	dnaA	mhp001	-	chromosomal replication initiation protein
2	 28.06	0	1537..2673	+	378	54019971	dnaN	mhp002	-	DNA polymerase III beta subunit
3	 32.90	0	2775..4634	+	619	54019972	gidA	mhp003	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
4	 28.76	0	4634..5092	+	152	54019973	-	mhp004	-	hypothetical protein
5	 29.07	0	5106..6089	+	327	54019974	-	mhp005	-	putative MgpA like-protein
6	 28.95	0	6073..7053	+	326	54019975	-	mhp006	-	hypothetical protein
7	 26.67	0	7156..7725	+	189	54019976	-	mhp007	-	hypothetical protein
8	 32.24	0	7815..8816	+	333	54019977	ftsY	mhp008	-	cell division protein ftsY
9	 30.17	0	8985..11006	+	673	54019978	-	mhp009	-	hypothetical protein
10	 29.17	0	11091..12098	+	335	54019979	hrcA	mhp010	-	heat-inducible transcription repressor
11	 27.18	0	12101..12847	+	248	54019980	grpE	mhp011	-	heat shock protein
12	 28.29	0	12831..14435	+	534	54019981	argS	mhp012	-	arginyl-tRNA synthetase
13	 30.47	0	14407..14685	+	92	54019982	-	mhp013	-	hypothetical protein
14	 35.65	+1	14755..15618	+	287	54019983	fba	mhp014	-	fructose-bisphosphate aldolase
15	 24.94	0	15625..16470	+	281	54019984	rluC	mhp015	-	ribosomal large subunit pseudouridine synthase C
16	 18.93	-2	16504..17586	-	360	54020307	-	mhp016	-	hypothetical protein
17	 30.91	0	17729..18595	+	288	54019985	-	mhp017	-	hypothetical protein
18	 22.64	-1	18552..19355	+	267	54019986	-	mhp018	-	hypothetical protein
19	 24.60	-1	19034..19285	-	83	54020308	-	mhp019	-	hypothetical protein
20	 24.36	-1	19664..19897	-	77	54020309	-	mhp020	-	hypothetical protein
21	 24.95	0	20052..22328	-	758	54020310	-	mhp021	-	ABC transporter ATP binding protein
22	 26.20	0	22521..24764	-	747	54020311	-	mhp022	-	ABC transporter ATP binding protein
23	 26.33	0	24838..27165	-	775	54020312	-	mhp023	-	ABC transporter ATP binding protein
24	 31.27	0	27152..27973	-	273	54020313	-	mhp024	-	hypothetical protein
25	 23.92	-1	28143..30425	-	760	54020314	-	mhp025	-	ABC transporter ATP binding protein
26	 26.07	0	30536..32863	-	775	54020315	-	mhp026	-	ABC transporter ATP binding protein
27	 32.96	0	32850..33653	-	267	54020316	-	mhp027	-	hypothetical protein
28	 24.84	-1	34028..34510	+	160	54019987	-	mhp028	-	signal peptidase I
29	 30.00	0	34903..36222	+	439	54019988	gatA	mhp029	-	amidase
30	 26.20	0	36215..37615	+	466	54019989	gatB	mhp030	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
31	 27.98	0	37851..38354	+	167	54019990	-	mhp031	-	hypothetical protein
32	 25.50	0	38471..39070	-	199	54020317	lspA	mhp032	-	lipoprotein signal peptidase
33	 30.55	0	39042..41702	-	886	54020318	ileS	mhp033	-	isoleucyl-tRNA synthetase
34	 28.30	0	41702..44242	-	846	54020319	parC	mhp034	-	DNA topoisomerase IV subunit A
35	 31.57	0	44235..46160	-	641	54020320	parE	mhp035	-	topoisomerase IV subunit B
36	 34.92	+1	46370..47380	+	336	54019991	gap	mhp036	-	glyceraldehyde 3-phosphate dehydrogenase
37	 28.86	0	47479..49491	+	670	54019992	-	mhp037	-	hypothetical protein
38	 28.63	0	49592..51676	-	694	54020321	-	mhp038	-	VACB-like ribonuclease II
39	 34.19	+1	51682..51915	-	77	54020322	-	mhp039	-	hypothetical protein
40	 23.71	-1	51969..53495	-	508	54020323	cls	mhp040	-	cardiolipin synthetase
41	 34.32	+1	53512..54525	-	337	54020324	recA	mhp041	-	recombinase A
42	 24.69	-1	54678..55487	+	269	54019993	licA	mhp042	-	PTS system, lichenan-specific IIA component
43	 30.79	0	55489..56748	+	419	54019994	obgE	mhp043	-	GTPase ObgE
44	 28.76	0	56833..57204	+	123	54019995	-	mhp044	-	hypothetical protein
45	 28.29	0	57208..58416	+	402	54019996	-	mhp045	-	hypothetical protein
46	 24.92	0	58511..58843	+	110	54019997	-	mhp046	-	hypothetical protein
47	 24.18	-1	58888..60045	+	385	54019998	-	mhp047	-	DNA polymerase IV
48	 20.83	-1	60050..60481	+	143	54019999	-	mhp048	-	hypothetical protein
49	 27.02	0	60481..61209	+	242	54020000	atpB	mhp049	-	F0F1 ATP synthase subunit A
50	 38.24	+2	61237..61542	+	101	54020001	atpE	mhp050	-	F0F1 ATP synthase subunit C
51	 27.87	0	61596..62162	+	188	54020002	atpF	mhp051	-	ATP synthase subunit B
52	 22.87	-1	62162..62725	+	187	54020003	atpH	mhp052	-	F0F1 ATP synthase subunit delta
53	 34.25	+1	62743..64266	+	507	54020004	atpA	mhp053	-	F0F1 ATP synthase subunit alpha
54	 24.79	-1	64295..65125	+	276	54020005	atpG	mhp054	-	ATP synthase gamma chain
55	 37.08	+1	65143..66558	+	471	54020006	atpD	mhp055	-	F0F1 ATP synthase subunit beta
56	 25.86	0	66905..67399	+	164	54020007	recU	mhp057	-	Holliday junction-specific endonuclease
57	 32.08	0	67615..68571	+	318	54020008	rpsB	mhp058	-	30S ribosomal protein S2
58	 31.58	0	68596..69507	+	303	54020009	tsf	mhp059	-	elongation factor Ts
59	 30.91	0	69592..70914	+	440	54020010	ffh	mhp060	-	signal recognition particle protein
60	 29.75	0	70941..72308	+	455	54020011	glyS	mhp061	-	glycyl-tRNA synthetase
61	 27.32	0	72301..74145	+	614	54020012	dnaG	mhp062	-	DNA primase
62	 32.31	0	74727..76196	+	489	161936260	rpoD	mhp063	-	RNA polymerase sigma factor
63	 27.52	0	76203..76976	+	257	54020014	-	mhp064	-	hypothetical protein
64	 30.93	0	76970..77800	+	276	54020015	nfo	mhp065	-	endonuclease IV
65	 28.43	0	77817..79061	+	414	54020016	tyrS	mhp066	-	tyrosyl tRNA synthetase
66	 26.06	0	79134..83834	+	1566	54020017	-	mhp067	-	hypothetical protein
67	 30.00	0	83882..84061	+	59	54020018	-	mhp068	-	hypothetical protein
68	 24.48	-1	84177..86786	+	869	54020019	-	mhp069	-	hypothetical protein
69	 23.98	-1	86844..88394	-	516	54020325	uvrC	mhp070	-	excinuclease ABC subunit C
70	 25.24	0	88512..88820	+	102	54020020	-	mhp071	-	hypothetical protein
71	 34.87	+1	88928..90811	+	627	54020021	dnaK	mhp072	-	molecular chaperone DnaK
72	 37.35	+1	91551..92147	+	198	54020022	dnaJ	mhp073	-	heat-shock protein
73	 30.00	0	92206..92895	+	229	54020023	cmk	mhp074	-	cytidylate kinase
74	 29.11	0	92913..94214	+	433	54020024	engA	mhp075	-	GTP-binding protein EngA
75	 25.77	0	94190..94480	-	96	54020326	-	mhp076	-	hypothetical protein
76	 29.55	0	94248..94538	+	96	54020025	-	mhp077	-	nucleoid DNA-binding protein
77	 29.87	0	94541..94771	+	76	54020026	lepA	mhp078	-	hypothetical protein
78	 34.22	+1	94772..96568	+	598	54020027	lepA	mhp079	-	GTP-binding protein LepA
79	 29.53	0	96588..97586	+	332	54020028	-	mhp080	-	hypothetical protein
80	 29.17	0	97805..97948	+	47	54020029	-	mhp081	-	hypothetical protein
81	 26.64	0	97921..99579	-	552	54020327	tnp	mhp082	-	transposase
82	 37.22	+1	99856..101940	-	694	54020328	fusA	mhp083	-	elongation factor G
83	 37.37	+1	101953..102423	-	156	54020329	rpsG	mhp084	-	30S ribosomal protein S7
84	 37.14	+1	102476..102895	-	139	54020330	rpsL	mhp085	-	30S ribosomal protein S12
85	 26.25	0	103026..103406	-	126	54020331	-	mhp086	-	hypothetical protein
86	 23.78	-1	103410..103922	-	170	54020332	-	mhp087	-	hypothetical protein
87	 25.23	0	103913..104356	-	147	54020333	-	mhp088	-	hypothetical protein
88	 28.69	0	104691..105272	+	193	54020030	-	mhp089	-	hypothetical protein
89	 21.13	-1	105217..106224	+	335	54020031	-	mhp090	-	hypothetical protein
90	 26.04	0	106211..106909	+	232	54020032	-	mhp091	-	hypothetical protein
91	 27.01	0	106933..108528	+	531	54020033	-	mhp092	-	hypothetical protein
92	 28.04	0	108688..109140	+	150	54020034	-	mhp093	-	hypothetical protein
93	 34.46	+1	109412..109678	+	88	54020035	rpsP	mhp094	-	30S ribosomal protein S16
94	 31.14	0	109700..110383	+	227	54020036	trmD	mhp095	-	tRNA (guanine-N1)-methyltransferase
95	 29.23	0	110436..110801	+	121	54020037	rplS	mhp096	-	50S ribosomal protein L19
96	 30.77	0	110806..112716	+	636	54020038	topA	mhp097	-	DNA topoisomerase I
97	 20.99	-1	112746..113393	+	215	54020039	-	mhp098	-	hypothetical protein
98	 26.33	0	113375..113974	+	199	54020040	psgA	mhp099	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
99	 31.96	0	113986..115590	-	534	54020334	pyrG	mhp100	-	CTP synthetase
100	 27.82	0	116100..116915	+	271	54020041	-	mhp101	-	hypothetical protein
29.13	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.