IslandPath Analysis: Mycoplasma genitalium G37



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.58   STD DEV: 3.61
Mycoplasma genitalium G37, complete genome - 1..580076
477 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 23.53	-2	686..1828	+	380	108885075	dnaN	MG_001	-	DNA polymerase III, beta subunit
2	 27.01	-1	1828..2760	+	310	108885076	-	MG_002	-	DnaJ domain-containing protein
3	 35.23	+1	2845..4797	+	650	12044853	gyrB	MG_003	-	DNA gyrase subunit B
4	 32.97	0	4812..7322	+	836	12044854	gyrA	MG_004	-	DNA gyrase subunit A
5	 30.62	0	7294..8547	+	417	12044855	serS	MG_005	-	seryl-tRNA synthetase
6	 30.17	0	8551..9183	+	210	12044856	tmk	MG_006	-	thymidylate kinase
7	 24.84	-1	9156..9920	+	254	12044857	-	MG_007	-	DNA polymerase III subunit delta'
8	 25.96	-1	9923..11251	+	442	12044858	trmE	MG_008	-	tRNA modification GTPase TrmE
9	 27.63	-1	11251..12039	+	262	12044859	-	MG_009	-	TatD family deoxyribonuclease
10	 26.48	-1	12068..12724	+	218	12044860	-	MG_010	-	DNA primase-related protein
11	 25.12	-1	12701..13564	-	287	12044861	-	MG_011	-	hypothetical protein
12	 27.78	-1	13569..14432	-	287	12044862	-	MG_012	-	alpha-L-glutamate ligase
13	 27.74	-1	14395..15216	-	273	108885077	folD	MG_013	-	methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase
14	 28.95	0	15555..17426	+	623	12044864	-	MG_014	-	ABC transporter, ATP-binding/permease protein
15	 29.77	0	17473..19242	+	589	12044865	-	MG_015	-	ABC transporter, ATP-binding/permease protein
16	 27.29	-1	19252..22347	+	1031	108885078	-	MG_018	-	SNF2 family helicase putative
17	 32.56	0	22389..23558	+	389	12044869	dnaJ	MG_019	-	chaperone protein DnaJ
18	 30.20	0	23542..24468	+	308	12044870	pip	MG_020	-	proline iminopeptidase
19	 28.40	0	24468..26006	+	512	12044871	metS	MG_021	-	methionyl-tRNA synthetase
20	 30.37	0	26036..26473	+	145	12044872	rpoE	MG_022	-	DNA-directed RNA polymerase subunit delta
21	 31.83	0	26479..27345	+	288	12044873	fba	MG_023	-	fructose-1,6-bisphosphate aldolase, class II
22	 29.62	0	27346..28449	+	367	12044874	-	MG_024	-	translation-associated GTPase
23	 29.10	0	28652..29548	+	298	12044875	-	MG_025	-	glycosyl transferase, group 2 family protein
24	 31.41	0	29552..30124	+	190	12044876	efp	MG_026	-	elongation factor P
25	 28.51	0	30093..30548	+	151	12044877	-	MG_027	-	transcription termination/antitermination protein NusB
26	 28.55	0	30548..31153	+	201	12044878	-	MG_028	-	hypothetical protein
27	 28.88	0	31143..31703	-	186	12044879	-	MG_029	-	DJ-1/PfpI family protein
28	 33.49	0	31705..32325	-	206	12044880	upp	MG_030	-	uracil phosphoribosyltransferase
29	 30.58	0	32359..36714	-	1451	12044881	polC-1	MG_031	-	DNA polymerase III PolC
30	 31.58	0	36977..38977	+	666	12044882	-	MG_032	-	hypothetical protein
31	 34.49	0	39127..39903	+	258	12044883	glpF	MG_033	-	glycerol uptake facilitator
32	 32.71	0	39872..40513	-	213	12044884	tdk	MG_034	-	thymidine kinase
33	 29.32	0	40542..41786	+	414	12044885	hisS	MG_035	-	histidyl-tRNA synthetase
34	 30.19	0	41776..43428	+	550	12044886	aspS	MG_036	-	aspartyl-tRNA synthetase
35	 30.30	0	43401..44753	+	450	12044887	-	MG_037	-	putative nicotinate phosphoribosyltransferase
36	 33.73	0	44750..46276	-	508	12044888	glpK	MG_038	-	glycerol kinase
37	 30.82	0	46267..47421	-	384	12044889	-	MG_039	-	FAD-dependent glycerol-3-phosphate dehydrogenase, putative
38	 32.55	0	47580..49355	+	591	12044890	-	MG_040	-	putative lipoprotein
39	 33.33	0	49376..49642	+	88	12044891	ptsH	MG_041	-	phosphocarrier protein HPr
40	 29.23	0	49840..51519	+	559	12044892	potA	MG_042	-	spermidine/putrescine ABC transporter, ATP-binding protein, putative
41	 31.24	0	51524..52381	+	285	12044893	potB	MG_043	-	spermidine/putrescine ABC transporter, permease protein, putative
42	 29.12	0	52365..53219	+	284	12044894	potC	MG_044	-	spermidine/putrescine ABC transporter, permease protein, putative
43	 31.13	0	53204..54655	+	483	12044895	-	MG_045	-	spermidine/putrescine ABC transporter, spermidine/putrescine binding protein, putative
44	 32.28	0	54657..55604	+	315	12044896	-	MG_046	-	O-sialoglycoprotein endopeptidase
45	 32.29	0	55588..56739	+	383	12044897	metX	MG_047	-	S-adenosylmethionine synthetase
46	 33.18	0	56969..58309	-	446	12044898	ffh	MG_048	-	signal recognition particle protein
47	 33.33	0	58362..59078	+	238	108885079	deoD	MG_049	-	purine nucleoside phosphorylase
48	 32.74	0	59082..59753	+	223	12044900	-	MG_050	-	deoxyribose-phosphate aldolase
49	 30.02	0	59740..61005	+	421	12044901	deoA	MG_051	-	thymidine phosphorylase
50	 29.77	0	61014..61406	+	130	12044902	cdd	MG_052	-	cytidine deaminase
51	 31.52	0	61406..63058	+	550	12044903	manB	MG_053	-	phosphoglucomutase/phosphomannomutase, putative
52	 30.70	0	63035..63985	-	316	12044904	-	MG_054	-	transcription antitermination protein NusG, putative
53	 28.49	0	63989..64360	-	123	12044905	secE	MG_055	-	preprotein translocase subunit SecE
54	 34.01	0	64367..64513	-	48	12044906	rpmG	MG_473	-	50S ribosomal protein L33
55	 25.52	-1	64527..64910	-	127	12044907	-	MG_474	-	hypothetical protein
56	 27.82	-1	64897..65730	-	277	12044908	-	MG_056	-	tetrapyrrole (corrin/porphyrin) methylase protein
57	 27.37	-1	65712..66248	-	178	12044909	-	MG_057	-	small primase-like protein
58	 32.43	0	66227..67225	-	332	108885080	prs	MG_058	-	ribose-phosphate pyrophosphokinase
59	 28.08	0	67206..67643	-	145	12044911	smpB	MG_059	-	SsrA-binding protein
60	 27.29	-1	67650..68543	+	297	12044912	-	MG_060	-	glycosyl transferase, group 2 family protein
61	 33.33	0	68522..70225	-	567	108885081	-	MG_061	-	MFS family transporter
62	 33.04	0	70530..72572	+	680	12044914	fruA	MG_062	-	PTS system, fructose-specific IIABC component
63	 28.40	0	72523..73434	+	303	108885082	fruK	MG_063	-	1-phosphofructokinase, putative
64	 29.70	0	73690..77685	+	1331	12044916	-	MG_064	-	ABC transporter, permease protein, putative
65	 30.41	0	77685..79085	+	466	12044917	-	MG_065	-	ABC transporter, ATP-binding protein
66	 32.87	0	79089..81035	+	648	12044918	tktA	MG_066	-	transketolase
67	 30.75	0	81046..82596	+	516	12044919	-	MG_067	-	putative lipoprotein
68	 30.39	0	82620..84044	+	474	12044920	-	MG_068	-	putative lipoprotein
69	 35.83	+1	88228..90954	+	908	12044921	ptsG	MG_069	-	PTS system, glucose-specific IIABC component
70	 34.15	0	91065..91919	+	284	12044922	rpsB	MG_070	-	30S ribosomal protein S2
71	 33.71	0	91924..94548	+	874	12044923	-	MG_071	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
72	 35.77	+1	94535..96955	+	806	12044924	secA	MG_072	-	preprotein translocase subunit SecA
73	 34.04	0	96933..98903	+	656	12044925	uvrB	MG_073	-	excinuclease ABC subunit B
74	 28.50	0	98906..99319	+	137	12044926	-	MG_074	-	hypothetical protein
75	 30.86	0	99383..102457	+	1024	12044927	-	MG_075	-	116 kDa surface antigen
76	 29.26	0	102454..102870	-	138	12044928	-	MG_076	-	hypothetical protein
77	 34.07	0	103104..104327	+	407	12044929	oppB	MG_077	-	oligopeptide ABC transporter, permease protein (OppB)
78	 35.46	+1	104320..105450	+	376	12044930	oppC	MG_078	-	oligopeptide ABC transporter, permease protein (OppC)
79	 34.33	0	105452..106660	+	402	12044931	oppD	MG_079	-	oligopeptide ABC transporter, ATP-binding protein
80	 31.88	0	106660..109206	+	848	12044932	oppF	MG_080	-	oligopeptide ABC transporter, ATP-binding protein
81	 35.02	0	109262..109675	+	137	12044933	rplK	MG_081	-	50S ribosomal protein L11
82	 33.63	0	109675..110355	+	226	12044934	rplA	MG_082	-	50S ribosomal protein L1
83	 33.51	0	110355..110924	+	189	12044935	pth	MG_083	-	peptidyl-tRNA hydrolase
84	 32.99	0	110917..111789	+	290	12044936	-	MG_084	-	tRNA(Ile)-lysidine synthetase
85	 32.91	0	111790..112725	+	311	12044937	ser	MG_085	-	HPr kinase/phosphorylase
86	 32.11	0	112718..113866	+	382	12044938	lgt	MG_086	-	prolipoprotein diacylglyceryl transferase
87	 38.57	+1	113895..114314	+	139	12044939	rpsL	MG_087	-	30S ribosomal protein S12
88	 37.61	+1	114331..114798	+	155	12044940	rpS7	MG_088	-	30S ribosomal protein S7
89	 36.14	+1	114808..116874	+	688	12044941	fus	MG_089	-	elongation factor G
90	 34.45	0	116926..117552	+	208	12044942	rpsF	MG_090	-	30S ribosomal protein S6
91	 34.78	0	117553..118035	+	160	12044943	ssb	MG_091	-	single-strand binding protein family
92	 34.91	0	118025..118342	+	105	12044944	rpsR	MG_092	-	30S ribosomal protein S18
93	 32.89	0	118345..118797	+	150	12044945	rplI	MG_093	-	50S ribosomal protein L9
94	 33.90	0	118781..120187	+	468	108885083	dnaB	MG_094	-	replicative DNA helicase
95	 31.75	0	120191..121387	+	398	12044947	-	MG_095	-	putative lipoprotein
96	 32.82	0	121571..123523	+	650	12044948	-	MG_096	-	hypothetical protein
97	 32.25	0	123580..124317	+	245	12044949	ung	MG_097	-	uracil-DNA glycosylase
98	 31.38	0	124417..125850	+	477	12044950	-	MG_098	-	aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein
99	 32.15	0	125853..127286	+	477	12044951	gatA	MG_099	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
100	 31.66	0	127279..128712	+	477	12044952	gatB	MG_100	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
31.58	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.