IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.76	0	181..1524	+	447	117923319	-	Mmc1_0001	-	chromosomal replication initiator protein DnaA
2	 57.56	0	1570..2700	+	376	117923320	-	Mmc1_0002	-	DNA polymerase III, beta subunit
3	 61.71	+1	2711..3859	+	382	117923321	-	Mmc1_0003	-	DNA replication and repair protein RecF
4	 52.31	0	3859..5223	+	454	117923322	-	Mmc1_0004	-	ATP binding protein
5	 49.42	-1	5220..5909	+	229	117923323	-	Mmc1_0005	-	hypothetical protein
6	 55.23	0	5916..8354	+	812	117923324	-	Mmc1_0006	-	DNA gyrase subunit B
7	 48.08	-1	8555..9178	-	207	117923325	-	Mmc1_0007	-	hypothetical protein
8	 57.10	0	9638..10243	-	201	117923326	-	Mmc1_0008	-	hypothetical protein
9	 51.85	0	10453..10722	+	89	117923327	-	Mmc1_0009	-	flagellar biosynthetic protein FliQ
10	 53.31	0	10733..11533	+	266	117923328	-	Mmc1_0010	-	flagellar biosynthetic protein FliR
11	 49.63	-1	11564..12631	+	355	117923329	-	Mmc1_0011	-	flagellar biosynthetic protein FlhB
12	 56.51	0	12800..13252	+	150	117923330	-	Mmc1_0012	-	regulatory protein RecX
13	 57.45	0	13357..15993	+	878	117923331	-	Mmc1_0013	-	alanyl-tRNA synthetase
14	 59.90	+1	16227..17009	-	260	117923332	-	Mmc1_0014	-	phosphomethylpyrimidine kinase
15	 53.90	0	17290..18675	-	461	117923333	hslU	Mmc1_0015	-	ATP-dependent protease ATP-binding subunit
16	 52.46	0	18810..20273	+	487	117923334	-	Mmc1_0016	-	hypothetical protein
17	 53.63	0	20282..20818	-	178	117923335	-	Mmc1_0017	-	ATP-dependent protease peptidase subunit
18	 48.72	-1	20962..21195	+	77	117923336	-	Mmc1_0018	-	hypothetical protein
19	 54.57	0	21209..21952	+	247	117923337	-	Mmc1_0019	-	arginyl-tRNA-protein transferase
20	 51.89	0	22046..22708	-	220	117923338	-	Mmc1_0020	-	dephospho-CoA kinase
21	 49.75	-1	22710..23507	-	265	117923339	-	Mmc1_0021	-	type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
22	 51.80	0	23815..24675	-	286	117923340	-	Mmc1_0022	-	shikimate dehydrogenase
23	 52.44	0	24687..25445	-	252	117923341	-	Mmc1_0023	-	hypothetical protein
24	 48.15	-1	25568..26701	+	377	117923342	-	Mmc1_0024	-	hypothetical protein
25	 52.29	0	27100..28170	+	356	117923343	-	Mmc1_0025	-	uroporphyrinogen decarboxylase
26	 50.11	-1	28170..29576	+	468	117923344	-	Mmc1_0026	-	coproporphyrinogen III oxidase, anaerobic
27	 54.96	0	29839..31230	+	463	117923345	-	Mmc1_0027	-	protoporphyrinogen oxidase
28	 53.22	0	31230..31943	+	237	117923346	-	Mmc1_0028	-	DNA polymerase III, epsilon subunit
29	 53.44	0	32014..32565	+	183	117923347	-	Mmc1_0029	-	cytochrome c553
30	 53.40	0	32681..33313	+	210	117923348	-	Mmc1_0030	-	hypothetical protein
31	 60.52	+1	33413..34600	+	395	117923349	-	Mmc1_0031	-	8-amino-7-oxononanoate synthase
32	 60.94	+1	34673..35371	+	232	117923350	-	Mmc1_0032	-	biotin synthesis protein BioH
33	 58.43	0	35368..36180	+	270	117923351	-	Mmc1_0033	-	biotin biosynthesis protein BioC
34	 55.90	0	36233..37198	+	321	117923352	-	Mmc1_0034	-	biotin synthase
35	 55.81	0	37226..37870	+	214	117923353	-	Mmc1_0035	-	hypothetical protein
36	 60.87	+1	37867..38487	+	206	117923354	-	Mmc1_0036	-	dethiobiotin synthase
37	 58.52	+1	38622..39935	+	437	117923355	-	Mmc1_0037	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
38	 61.71	+1	39950..41704	-	584	117923356	-	Mmc1_0038	-	tetratricopeptide TPR_4
39	 60.11	+1	41900..42769	-	289	117923357	-	Mmc1_0039	-	pantothenate synthetase
40	 60.59	+1	42778..43584	-	268	117923358	-	Mmc1_0040	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
41	 59.46	+1	43642..44085	-	147	117923359	-	Mmc1_0041	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
42	 52.74	0	44151..45026	-	291	117923360	-	Mmc1_0042	-	peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins
43	 54.22	0	45368..46315	+	315	117923361	-	Mmc1_0043	-	peptidase M14, carboxypeptidase A
44	 58.87	+1	46312..47529	+	405	117923362	-	Mmc1_0044	-	hypothetical protein
45	 55.52	0	47652..48503	+	283	117923363	-	Mmc1_0045	-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
46	 59.88	+1	48503..49666	+	387	117923364	-	Mmc1_0046	-	succinyl-diaminopimelate desuccinylase
47	 56.73	0	49806..50117	-	103	117923365	-	Mmc1_0047	-	ferredoxin, 2Fe-2S
48	 51.19	0	50570..50905	+	111	117923366	-	Mmc1_0048	-	DsrC family protein
49	 52.28	0	51232..51933	+	233	117923367	-	Mmc1_0049	-	nitrate reductase, gamma subunit
50	 53.03	0	52041..53543	+	500	117923368	-	Mmc1_0050	-	Fe-S oxidoreductase
51	 59.56	+1	53544..54275	+	243	117923369	-	Mmc1_0051	-	ribonuclease PH
52	 59.16	+1	54428..55600	+	390	117923370	-	Mmc1_0052	-	coproporphyrinogen III oxidase, anaerobic
53	 53.92	0	55693..57591	+	632	117923371	-	Mmc1_0053	-	transposase, IS4 family protein
54	 61.24	+1	57757..59304	+	515	117923372	-	Mmc1_0054	-	methyl-accepting chemotaxis sensory transducer
55	 59.09	+1	59521..60642	+	373	117923373	-	Mmc1_0055	-	L-alanine dehydrogenase
56	 56.28	0	60705..62090	-	461	117923374	-	Mmc1_0056	-	peptidase M48, Ste24p
57	 54.61	0	62251..62706	+	151	117923375	-	Mmc1_0057	-	flagellar export protein FliJ
58	 52.83	0	62706..63218	+	170	117923376	-	Mmc1_0058	-	hypothetical protein
59	 53.85	0	63688..64506	+	272	117923377	-	Mmc1_0059	-	flagellin domain-containing protein
60	 59.54	+1	64649..65251	+	200	117923378	-	Mmc1_0060	-	hypothetical protein
61	 60.11	+1	65238..65969	+	243	117923379	-	Mmc1_0061	-	hypothetical protein
62	 53.70	0	66117..66887	+	256	117923380	-	Mmc1_0062	-	flagellin domain-containing protein
63	 54.65	0	67016..67822	+	268	117923381	-	Mmc1_0063	-	flagellin domain-containing protein
64	 57.97	0	68873..69688	+	271	117923382	-	Mmc1_0064	-	flagellin domain-containing protein
65	 57.60	0	69892..70707	+	271	117923383	-	Mmc1_0065	-	flagellin domain-containing protein
66	 57.97	0	70911..71726	+	271	117923384	-	Mmc1_0066	-	flagellin domain-containing protein
67	 56.77	0	71868..72170	-	100	117923385	-	Mmc1_0067	-	hypothetical protein
68	 57.72	0	72401..73216	+	271	117923386	-	Mmc1_0068	-	flagellin domain-containing protein
69	 57.84	0	73748..74563	+	271	117923387	-	Mmc1_0069	-	flagellin domain-containing protein
70	 56.13	0	75111..75926	+	271	117923388	-	Mmc1_0070	-	flagellin domain-containing protein
71	 57.41	0	76171..77304	+	377	117923389	-	Mmc1_0071	-	flagellin domain-containing protein
72	 55.27	0	77939..78754	+	271	117923390	-	Mmc1_0072	-	flagellin domain-containing protein
73	 55.64	0	79378..80193	+	271	117923391	-	Mmc1_0073	-	flagellin domain-containing protein
74	 57.65	0	80287..80652	+	121	117923392	-	Mmc1_0074	-	hypothetical protein
75	 53.12	0	80649..81017	-	122	117923393	-	Mmc1_0075	-	hypothetical protein
76	 55.92	0	81137..81964	+	275	117923394	-	Mmc1_0076	-	flagellin domain-containing protein
77	 52.48	0	82288..83112	+	274	117923395	-	Mmc1_0077	-	flagellin domain-containing protein
78	 57.93	0	83294..84106	-	270	117923396	-	Mmc1_0078	-	inositol-phosphate phosphatase
79	 52.41	0	84532..86298	+	588	117923397	-	Mmc1_0079	-	flagellar hook-associated protein FlgK
80	 53.98	0	86321..87526	+	401	117923398	-	Mmc1_0080	-	flagellin-like protein
81	 51.33	0	87557..88045	+	162	117923399	-	Mmc1_0081	-	hypothetical protein
82	 55.56	0	88268..89086	+	272	117923400	-	Mmc1_0082	-	flagellin domain-containing protein
83	 51.71	0	89154..89534	+	126	117923401	-	Mmc1_0083	-	flagellar protein FlaG protein
84	 51.88	0	89589..91028	+	479	117923402	-	Mmc1_0084	-	flagellar hook-associated 2 domain-containing protein
85	 53.01	0	91126..91491	+	121	117923403	-	Mmc1_0085	-	flagellar protein FliS
86	 53.83	0	91595..92116	+	173	117923404	-	Mmc1_0086	-	flagellar protein FliS
87	 52.63	0	92165..92506	+	113	117923405	-	Mmc1_0087	-	hypothetical protein
88	 57.99	0	92776..93432	-	218	117923406	-	Mmc1_0088	-	hypothetical protein
89	 47.57	-1	93583..93849	+	88	117923407	-	Mmc1_0089	-	hypothetical protein
90	 54.55	0	93846..94439	+	197	117923408	-	Mmc1_0090	-	shikimate kinase
91	 58.16	0	95149..95442	+	97	117923409	-	Mmc1_0091	-	hypothetical protein
92	 48.45	-1	95540..95830	-	96	117923410	-	Mmc1_0092	-	integration host factor, alpha subunit
93	 55.68	0	96408..97709	+	433	117923411	-	Mmc1_0093	-	glutamate-1-semialdehyde 2,1-aminomutase
94	 57.37	0	97882..99483	-	533	117923412	-	Mmc1_0094	-	hypothetical protein
95	 53.80	0	99703..100650	+	315	117923413	-	Mmc1_0095	-	beta-lactamase domain-containing protein
96	 58.16	0	100922..101356	-	144	117923414	-	Mmc1_0096	-	hypothetical protein
97	 58.67	+1	101607..102569	+	320	117923415	-	Mmc1_0097	-	sigma-54 dependent trancsriptional regulator
98	 59.74	+1	102678..103601	-	307	117923416	-	Mmc1_0098	-	dihydroorotate oxidase B, electron transfer subunit
99	 53.78	0	103804..104160	-	118	117923417	-	Mmc1_0099	-	hypothetical protein
100	 56.01	0	104173..104538	-	121	117923418	-	Mmc1_0100	-	nitrogen regulatory protein P-II
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.