IslandPath Analysis: Desulfovibrio vulgaris DP4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.87   STD DEV: 4.18
Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome - 1..3462887
2941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.12	0	339..1724	+	461	120601052	asnC	Dvul_0001	-	asparaginyl-tRNA synthetase
2	 62.05	0	1758..2363	+	201	120601053	-	Dvul_0002	-	UspA domain-containing protein
3	 64.63	0	2656..3441	-	261	120601054	-	Dvul_0003	-	putative lipoprotein
4	 62.93	0	3444..6014	-	856	120601055	-	Dvul_0004	-	DNA gyrase, A subunit
5	 63.12	0	6114..8510	-	798	120601056	-	Dvul_0005	-	DNA gyrase, B subunit
6	 59.31	0	8512..9666	-	384	120601057	-	Dvul_0006	-	DNA polymerase III, beta subunit
7	 62.44	0	9812..11113	-	433	120601058	-	Dvul_0007	-	chromosomal replication initiator protein DnaA
8	 59.97	0	11465..12718	+	417	120601059	-	Dvul_0008	-	peptidase M23B
9	 59.60	0	13340..14683	-	447	120601060	-	Dvul_0009	-	glutamine synthetase, type I
10	 63.39	0	15142..15996	+	284	120601061	-	Dvul_0010	-	hypothetical protein
11	 64.30	0	16232..18514	-	760	120601062	-	Dvul_0011	-	DNA topoisomerase I
12	 63.86	0	18620..19474	+	284	120601063	-	Dvul_0012	-	peptidase M48, Ste24p
13	 66.57	0	19642..20655	+	337	120601064	-	Dvul_0013	-	hypothetical protein
14	 65.27	0	21358..22713	+	451	120601065	-	Dvul_0014	-	permease
15	 63.98	0	23278..23799	-	173	120601066	-	Dvul_0015	-	zinc resistance-associated protein
16	 67.45	+1	24392..26431	+	679	120601067	-	Dvul_0016	-	signal transduction histidine kinase, nitrogen specific, NtrB
17	 66.01	0	26433..27812	+	459	120601068	-	Dvul_0017	-	two component, sigma54 specific, Fis family transcriptional regulator
18	 62.96	0	28329..30674	+	781	120601069	-	Dvul_0018	-	ribonucleotide-diphosphate reductase subunit alpha
19	 63.85	0	31155..31616	+	153	120601070	-	Dvul_0019	-	YbaK/prolyl-tRNA synthetase associated region
20	 61.98	0	31710..32093	+	127	120601071	-	Dvul_0020	-	diacylglycerol kinase
21	 58.48	-1	32099..33673	+	524	120601072	-	Dvul_0021	-	sulfatase
22	 67.50	+1	33873..34589	+	238	120601073	-	Dvul_0022	-	cell division ATP-binding protein FtsE
23	 69.18	+1	34589..35464	+	291	120601074	-	Dvul_0023	-	hypothetical protein
24	 67.45	+1	35497..37161	+	554	120601075	-	Dvul_0024	-	dihydroxy-acid dehydratase
25	 67.92	+1	37633..40026	+	797	120601076	-	Dvul_0025	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
26	 67.81	+1	40534..41322	+	262	120601077	-	Dvul_0026	-	methyltransferase type 11
27	 65.15	0	41443..42696	+	417	120601078	hisS	Dvul_0027	-	histidyl-tRNA synthetase
28	 64.32	0	42715..44547	+	610	120601079	aspS	Dvul_0028	-	aspartyl-tRNA synthetase
29	 60.47	0	44849..45364	+	171	120601080	-	Dvul_0029	-	peptide deformylase
30	 67.27	+1	45337..46329	+	330	120601081	-	Dvul_0030	-	methionyl-tRNA formyltransferase
31	 60.61	0	46449..47372	+	307	120601082	-	Dvul_0031	-	hypothetical protein
32	 62.66	0	47604..49127	+	507	120601083	-	Dvul_0032	-	NusB/RsmB/TIM44
33	 54.07	-2	49224..49604	-	126	120601084	-	Dvul_0033	-	hypothetical protein
34	 61.79	0	49686..50711	-	341	120601085	-	Dvul_0034	-	ribokinase-like domain-containing protein
35	 61.86	0	50722..51636	-	304	120601086	-	Dvul_0035	-	parB-like partition proteins
36	 58.10	-1	51713..52132	+	139	120601087	-	Dvul_0036	-	hypothetical protein
37	 57.29	-1	52137..52925	-	262	120601088	-	Dvul_0037	-	cobyrinic acid a,c-diamide synthase
38	 60.12	0	53683..54690	-	335	120601089	-	Dvul_0038	-	NAD-dependent epimerase/dehydratase
39	 60.71	0	54738..55493	-	251	120601090	-	Dvul_0039	-	band 7 protein
40	 68.30	+1	55963..56880	-	305	120601091	-	Dvul_0040	-	hypothetical protein
41	 67.00	0	56862..58076	-	404	120601092	-	Dvul_0041	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
42	 65.09	0	58076..58645	-	189	120601093	-	Dvul_0042	-	putative lipoprotein
43	 67.47	+1	58758..59873	+	371	120601094	-	Dvul_0043	-	queuosine biosynthesis protein
44	 60.26	0	60237..60470	+	77	120601095	-	Dvul_0044	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
45	 65.83	0	60474..61547	+	357	120601096	-	Dvul_0045	-	2-ketoisovalerate ferredoxin reductase
46	 65.39	0	61547..62329	+	260	120601097	-	Dvul_0046	-	thiamine pyrophosphate binding domain-containing protein
47	 64.66	0	62329..62877	+	182	120601098	-	Dvul_0047	-	pyruvate ferredoxin/flavodoxin oxidoreductase
48	 63.41	0	62874..63119	-	81	120601099	-	Dvul_0048	-	hypothetical protein
49	 61.56	0	63153..63524	-	123	120601100	-	Dvul_0049	-	hypothetical protein
50	 64.27	0	63548..64717	-	389	120601101	-	Dvul_0050	-	hypothetical protein
51	 62.86	0	64729..65148	-	139	120601102	-	Dvul_0051	-	TadE family protein
52	 59.23	0	65145..65561	-	138	120601103	-	Dvul_0052	-	TadE family protein
53	 63.27	0	66201..67910	+	569	120601104	-	Dvul_0053	-	potassium-transporting ATPase subunit A
54	 64.70	0	67927..69963	+	678	120601105	-	Dvul_0054	-	K+-transporting ATPase, B subunit
55	 66.31	0	69973..70530	+	185	120601106	-	Dvul_0055	-	potassium-transporting ATPase, C subunit
56	 64.39	0	70612..71751	+	379	120601107	-	Dvul_0056	-	osmosensitive K+ channel His kinase sensor
57	 63.92	0	71748..73529	+	593	120601108	-	Dvul_0057	-	multi-sensor signal transduction histidine kinase
58	 65.04	0	73526..74875	+	449	120601109	-	Dvul_0058	-	two component, sigma54 specific, Fis family transcriptional regulator
59	 66.67	0	75167..75625	-	152	120601110	-	Dvul_0059	-	hypothetical protein
60	 69.23	+1	75622..77880	-	752	120601111	-	Dvul_0060	-	heavy metal translocating P-type ATPase
61	 64.13	0	77892..78167	-	91	120601112	-	Dvul_0061	-	hypothetical protein
62	 62.76	0	78341..78673	+	110	120601113	-	Dvul_0062	-	hypothetical protein
63	 61.59	0	78965..79378	+	137	120601114	-	Dvul_0063	-	small multidrug resistance protein
64	 67.27	+1	79375..79707	+	110	120601115	-	Dvul_0064	-	small multidrug resistance protein
65	 63.74	0	79754..80026	+	90	120601116	-	Dvul_0065	-	hypothetical protein
66	 65.26	0	80094..80804	-	236	120601117	-	Dvul_0066	-	ABC transporter related
67	 66.67	0	80979..82445	-	488	120601118	-	Dvul_0067	-	hypothetical protein
68	 64.71	0	82442..82900	-	152	120601119	-	Dvul_0068	-	hypothetical protein
69	 62.83	0	83134..83550	+	138	120601120	-	Dvul_0069	-	hypothetical protein
70	 64.61	0	83815..86835	-	1006	120601121	-	Dvul_0070	-	putative delta-1-pyrroline-5-carboxylate dehydrogenase
71	 57.06	-1	86930..87283	+	117	120601122	-	Dvul_0071	-	hypothetical protein
72	 67.53	+1	87284..88207	-	307	120601123	-	Dvul_0072	-	dihydroorotate dehydrogenase family protein
73	 66.67	0	88216..89112	-	298	120601124	-	Dvul_0073	-	oxidoreductase FAD-binding subunit
74	 67.34	+1	89298..91391	+	697	120601125	-	Dvul_0074	-	peptidase U32
75	 67.90	+1	92060..92950	+	296	120601126	-	Dvul_0075	-	LysR family transcriptional regulator
76	 56.58	-1	92981..93436	-	151	120601127	-	Dvul_0076	-	hypothetical protein
77	 61.17	0	93604..95058	-	484	120601128	-	Dvul_0077	-	GntR family transcriptional regulator
78	 56.60	-1	95240..95716	+	158	120601129	-	Dvul_0078	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
79	 67.35	+1	96130..97728	-	532	120601130	-	Dvul_0079	-	DEAD/DEAH box helicase domain-containing protein
80	 64.97	0	97716..98069	-	117	120601131	-	Dvul_0080	-	excinuclease ABC subunit C
81	 64.03	0	98080..98799	-	239	120601132	-	Dvul_0081	-	beta-lactamase domain-containing protein
82	 67.02	0	98906..99469	-	187	120601133	-	Dvul_0082	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
83	 62.06	0	101089..101370	-	93	120601134	-	Dvul_0083	-	hypothetical protein
84	 60.06	0	101367..101684	-	105	120601135	-	Dvul_0084	-	hypothetical protein
85	 59.91	0	101700..101921	-	73	120601136	-	Dvul_0085	-	DNA binding domain-containing protein
86	 61.80	0	102296..102829	-	177	120601137	-	Dvul_0086	-	hypothetical protein
87	 63.98	0	102826..105174	-	782	120601138	-	Dvul_0087	-	TOPRIM domain-containing protein
88	 64.26	0	105174..105422	-	82	120601139	-	Dvul_0088	-	hypothetical protein
89	 60.35	0	105895..107097	-	400	120601140	-	Dvul_0089	-	phage integrase family protein
90	 66.37	0	107967..109322	-	451	120601141	-	Dvul_0090	-	two component, sigma54 specific, Fis family transcriptional regulator
91	 64.13	0	109337..110797	-	486	120601142	-	Dvul_0091	-	integral membrane sensor signal transduction histidine kinase
92	 69.50	+1	110794..112842	-	682	120601143	-	Dvul_0092	-	response regulator receiver protein
93	 67.77	+1	113322..113864	+	180	120601144	-	Dvul_0093	-	hypothetical protein
94	 64.97	0	113926..114219	+	97	120601145	-	Dvul_0094	-	hypothetical protein
95	 63.59	0	114233..115303	+	356	120601146	-	Dvul_0095	-	hypothetical protein
96	 67.56	+1	115290..116072	+	260	120601147	-	Dvul_0096	-	hypothetical protein
97	 66.83	0	116317..117576	+	419	120601148	-	Dvul_0097	-	aromatic amino acid transporter
98	 60.23	0	117604..118131	-	175	120601149	-	Dvul_0098	-	hypothetical protein
99	 64.20	0	118322..118969	+	215	120601150	-	Dvul_0099	-	hemolysin III family channel protein
100	 69.53	+1	119275..120669	-	464	120601151	-	Dvul_0100	-	aldehyde dehydrogenase
62.87	MEAN

4.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.