IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.97   STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.84	+1	1492..1857	+	121	119871521	-	Pisl_0001	-	paREP9
2	 52.02	0	1869..2660	+	263	119871522	-	Pisl_0002	-	hypothetical protein
3	 53.69	0	3000..3623	-	207	119871523	-	Pisl_0003	-	hypothetical protein
4	 59.36	+1	3668..4570	+	300	119871524	-	Pisl_0004	-	NAD-dependent epimerase/dehydratase
5	 53.55	0	4829..6109	-	426	119871525	-	Pisl_0005	-	transposase, IS605 OrfB
6	 59.79	+1	6216..6506	-	96	119871526	-	Pisl_0006	-	hypothetical protein
7	 54.76	0	6710..6877	+	55	119871527	-	Pisl_0007	-	hypothetical protein
8	 59.03	+1	6907..7482	+	191	119871528	-	Pisl_0008	-	hypothetical protein
9	 52.61	0	7469..8215	-	248	119871529	-	Pisl_0009	-	zinc/iron permease
10	 60.60	+1	8263..9234	+	323	119871530	-	Pisl_0010	-	zinc finger, RanBP2-type
11	 63.64	+2	9231..9527	+	98	119871531	-	Pisl_0011	-	hypothetical protein
12	 56.89	+1	9524..10444	+	306	119871532	-	Pisl_0012	-	hypothetical protein
13	 51.56	0	10441..11241	-	266	119871533	-	Pisl_0013	-	hypothetical protein
14	 60.38	+1	11280..12122	-	280	119871534	-	Pisl_0014	-	zinc finger TFIIB-type domain-containing protein
15	 63.16	+1	12119..13117	-	332	119871535	-	Pisl_0015	-	hypothetical protein
16	 61.87	+1	13170..14108	+	312	119871536	-	Pisl_0016	-	aminotransferase, class I and II
17	 55.52	0	14031..14945	-	304	119871537	-	Pisl_0017	-	PP-loop domain-containing protein
18	 60.16	+1	14984..15613	+	209	119871538	-	Pisl_0018	-	RNA 2'-phosphotransferase-like protein
19	 51.07	0	16178..17203	-	341	119871539	-	Pisl_0019	-	hypothetical protein
20	 61.40	+1	17273..18145	+	290	119871540	-	Pisl_0020	-	hypothetical protein
21	 65.58	+2	18145..19062	+	305	119871541	-	Pisl_0021	-	hypothetical protein
22	 57.89	+1	19059..20141	-	360	119871542	-	Pisl_0022	-	radical SAM domain-containing protein
23	 49.35	0	20302..20532	+	76	119871543	-	Pisl_0023	-	hypothetical protein
24	 57.49	+1	20507..22588	-	693	119871544	-	Pisl_0024	-	hypothetical protein
25	 58.10	+1	22660..23862	+	400	119871545	-	Pisl_0025	-	hypothetical protein
26	 48.99	0	23859..24401	+	180	119871546	-	Pisl_0026	-	hypothetical protein
27	 48.45	0	24374..24631	+	85	119871547	-	Pisl_0027	-	hypothetical protein
28	 54.14	0	25003..26415	-	470	119871548	-	Pisl_0028	-	hypothetical protein
29	 52.27	0	26445..27653	-	402	119871549	-	Pisl_0029	-	acetyl-CoA acetyltransferase
30	 57.40	+1	27724..28878	+	384	119871550	-	Pisl_0030	-	methionine synthase, vitamin-B12 independent
31	 62.63	+1	29216..30181	+	321	119871551	-	Pisl_0031	-	tRNA (guanine-N1-)-methyltransferase
32	 59.09	+1	30173..31096	-	307	119871552	-	Pisl_0032	-	peptidase M19, renal dipeptidase
33	 44.44	0	31096..31230	-	44	119871553	-	Pisl_0033	-	hypothetical protein
34	 60.22	+1	31259..31909	-	216	119871554	-	Pisl_0034	-	radical SAM domain-containing protein
35	 48.79	0	31906..32358	-	150	119871555	-	Pisl_0035	-	hypothetical protein
36	 53.80	0	32578..33774	-	398	119871556	-	Pisl_0036	-	SufBD protein
37	 51.24	0	33752..34438	-	228	119871557	-	Pisl_0037	-	ABC transporter related
38	 57.28	+1	34482..34907	-	141	119871558	-	Pisl_0038	-	PadR-like family transcriptional regulator
39	 54.45	0	34968..35900	+	310	119871559	-	Pisl_0039	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
40	 54.83	0	35901..36635	-	244	119871560	-	Pisl_0040	-	hypothetical protein
41	 50.47	0	36773..37198	+	141	119871561	-	Pisl_0041	-	hypothetical protein
42	 59.25	+1	37219..38229	+	336	119871562	-	Pisl_0042	-	delta-aminolevulinic acid dehydratase
43	 61.98	+1	38226..38609	-	127	119871563	-	Pisl_0043	-	paREP9
44	 59.96	+1	39940..40938	+	332	119871564	-	Pisl_0044	-	AsnC family transcriptional regulator
45	 63.31	+1	40935..41828	-	297	119871565	-	Pisl_0045	-	molybdate metabolism transcriptional regulator
46	 62.58	+1	41861..42790	+	309	119871566	-	Pisl_0046	-	binding protein, putative
47	 63.57	+2	42780..43424	+	214	119871567	-	Pisl_0047	-	binding-protein-dependent transport systems inner membrane component
48	 54.33	0	43421..44020	+	199	119871568	-	Pisl_0048	-	ABC transporter related
49	 48.81	0	44006..44341	-	111	119871569	-	Pisl_0049	-	hypothetical protein
50	 57.06	+1	44350..45255	-	301	119871570	-	Pisl_0050	-	porphobilinogen deaminase
51	 58.21	+1	45252..46421	-	389	119871571	-	Pisl_0051	-	radical SAM domain-containing protein
52	 54.42	0	46476..47822	+	448	119871572	-	Pisl_0052	-	hypothetical protein
53	 50.72	0	47788..48063	-	91	119871573	-	Pisl_0053	-	hypothetical protein
54	 56.63	+1	48082..48978	-	298	119871574	-	Pisl_0054	-	homoserine kinase
55	 54.00	0	49391..50677	-	428	119871575	-	Pisl_0055	-	amino acid permease-associated region
56	 58.48	+1	50737..51762	+	341	119871576	-	Pisl_0056	-	egghead-like protein
57	 65.44	+2	52005..52658	-	217	119871577	-	Pisl_0057	-	ABC transporter related
58	 64.39	+2	52643..53344	-	233	119871578	-	Pisl_0058	-	sulfate ABC transporter, permease protein, putative
59	 58.68	+1	53569..55635	+	688	119871579	-	Pisl_0059	-	periplasmic binding protein
60	 66.42	+2	55655..56473	+	272	119871580	-	Pisl_0060	-	modD protein
61	 55.47	0	56646..57761	+	371	119871581	-	Pisl_0061	-	hypothetical protein
62	 60.26	+1	57764..58216	+	150	119871582	-	Pisl_0062	-	hypothetical protein
63	 50.85	0	58583..59410	-	275	119871583	-	Pisl_0063	-	hypothetical protein
64	 64.56	+2	59966..60250	-	94	119871584	-	Pisl_0064	-	hypothetical protein
65	 62.90	+1	60312..60497	-	61	119871585	-	Pisl_0065	-	hypothetical protein
66	 53.45	0	60983..61315	+	110	119871586	-	Pisl_0066	-	hypothetical protein
67	 52.17	0	61701..61976	+	91	119871587	-	Pisl_0067	-	hypothetical protein
68	 56.59	+1	62931..63833	-	300	119871588	-	Pisl_0068	-	hypothetical protein
69	 47.69	0	63862..65289	+	475	119871589	-	Pisl_0069	-	ATPase
70	 55.50	0	65293..66447	+	384	119871590	-	Pisl_0070	-	hypothetical protein
71	 63.48	+1	66475..66819	+	114	119871591	-	Pisl_0071	-	hypothetical protein
72	 54.29	0	66841..67050	+	69	119871592	-	Pisl_0072	-	hypothetical protein
73	 55.97	0	67268..69127	-	619	119871593	-	Pisl_0073	-	metallophosphoesterase
74	 57.51	+1	69124..70401	-	425	119871594	-	Pisl_0074	-	hypothetical protein
75	 54.78	0	70496..71992	+	498	119871595	-	Pisl_0075	-	extracellular solute-binding protein
76	 55.57	0	72004..73806	-	600	119871596	-	Pisl_0076	-	binding-protein-dependent transport systems inner membrane component
77	 50.29	0	73803..74846	-	347	119871597	-	Pisl_0077	-	ABC transporter related
78	 50.16	0	74920..76155	+	411	119871598	-	Pisl_0078	-	translation initiation factor IF-2 subunit gamma
79	 55.27	0	76263..76736	+	157	119871599	-	Pisl_0079	-	NUDIX hydrolase
80	 61.68	+1	76737..77858	-	373	119871600	-	Pisl_0080	-	hypothetical protein
81	 63.10	+1	77839..79830	-	663	119871601	-	Pisl_0081	-	hypothetical protein
82	 55.62	0	79823..80302	-	159	119871602	-	Pisl_0082	-	hypothetical protein
83	 61.00	+1	80306..80605	-	99	119871603	-	Pisl_0083	-	hypothetical protein
84	 59.56	+1	80653..81708	+	351	119871604	-	Pisl_0084	-	tRNA-modifying enzyme
85	 65.99	+2	82100..82540	+	146	119871605	-	Pisl_0086	-	hypothetical protein
86	 57.31	+1	82590..82931	+	113	119871606	-	Pisl_0087	-	hypothetical protein
87	 60.76	+1	82953..83375	+	140	119871607	-	Pisl_0088	-	NUDIX hydrolase
88	 63.17	+1	83512..84225	+	237	119871608	-	Pisl_0089	-	ABC transporter related
89	 53.80	0	84222..85721	+	499	119871609	-	Pisl_0090	-	hypothetical protein
90	 59.02	+1	85712..86221	-	169	119871610	-	Pisl_0091	-	PaREP8 domain-containing protein
91	 60.81	+1	86345..86959	+	204	119871611	-	Pisl_0092	-	hypothetical protein
92	 45.69	0	87116..87625	-	169	119871612	-	Pisl_0093	-	hypothetical protein
93	 52.62	0	87632..88699	+	355	119871613	purP	Pisl_0094	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
94	 55.09	0	88692..89762	-	356	119871614	purP	Pisl_0095	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
95	 53.55	0	89809..90990	+	393	119871615	-	Pisl_0096	-	glutamyl-tRNA reductase
96	 58.55	+1	91241..91708	+	155	119871616	-	Pisl_0097	-	PaREP8 domain-containing protein
97	 54.70	0	91705..93033	-	442	119871617	-	Pisl_0098	-	hypothetical protein
98	 61.37	+1	93081..94157	-	358	119871618	-	Pisl_0099	-	phosphoribosylaminoimidazole carboxylase
99	 47.20	0	94228..94710	-	160	119871619	-	Pisl_0100	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
100	 52.40	0	94853..96934	+	693	119871620	-	Pisl_0101	-	phosphoribosylformylglycinamidine synthase II
48.97	MEAN

7.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.