IslandPath Analysis: Buchnera aphidicola str. Sg (Schizaphis graminum)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.26   STD DEV: 3.97
Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome - 1..641454
546 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.01	0	1..1896	+	631	21672295	gidA	BUsg001	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2	 26.37	0	2026..2844	+	272	21672296	atpB	BUsg002	-	F0F1 ATP synthase subunit A
3	 33.75	+1	2887..3126	+	79	21672297	atpE	BUsg003	-	F0F1 ATP synthase subunit C
4	 22.36	0	3237..3728	+	163	21672298	atpF	BUsg004	-	F0F1 ATP synthase subunit B
5	 22.47	0	3740..4273	+	177	21672299	atpH	BUsg005	-	F0F1 ATP synthase subunit delta
6	 30.66	+1	4287..5819	+	510	21672300	atpA	BUsg006	-	F0F1 ATP synthase subunit alpha
7	 25.91	0	5886..6761	+	291	21672301	atpG	BUsg007	-	F0F1 ATP synthase subunit gamma
8	 33.12	+1	6783..8183	+	466	21672302	atpD	BUsg008	-	F0F1 ATP synthase subunit beta
9	 29.50	0	8205..8621	+	138	21672303	atpC	BUsg009	-	F0F1 ATP synthase subunit epsilon
10	 26.16	0	8726..11137	-	803	21672304	gyrB	BUsg010	-	DNA gyrase subunit B
11	 21.62	-1	11292..12392	-	366	21672305	dnaN	BUsg011	-	DNA polymerase III beta chain
12	 30.26	+1	12397..13761	-	454	21672306	dnaA	BUsg012	-	chromosomal replication initiator protein
13	 34.72	+2	14180..14323	+	47	21672307	rpmH	BUsg013	-	50S ribosomal protein L34
14	 22.32	0	14337..14681	+	114	21672308	rnpA	BUsg014	-	ribonuclease P protein component
15	 25.19	0	14660..14917	+	85	21672309	yidD	BUsg015	-	hypothetical protein
16	 26.21	0	14917..16530	+	537	21672310	yidC	BUsg016	-	inner membrane protein
17	 26.84	0	16573..17943	+	456	21672311	trmE	BUsg017	-	tRNA modification GTPase TrmE
18	 34.36	+2	18275..18565	+	96	21672312	groES	BUsg018	-	co-chaperonin GroES
19	 35.94	+2	18623..20269	+	548	21672313	groEL	BUsg019	-	chaperonin GroEL
20	 23.77	0	20390..21403	-	337	21672314	yjeK	BUsg020	-	hypothetical protein
21	 25.71	0	21429..21992	+	187	21672315	efp	BUsg021	-	elongation factor P
22	 29.69	0	22015..22755	-	246	21672316	dnaC	BUsg022	-	DNA replication protein DnaC
23	 24.95	0	22755..23255	-	166	21672317	dnaT	BUsg023	-	primosomal protein I
24	 25.00	0	24003..25058	+	351	21672318	ftsY	BUsg025	-	cell division protein FtsY
25	 29.60	0	25214..26071	+	285	21672319	rpoH	BUsg026	-	RNA polymerase factor sigma-32
26	 27.37	0	26225..28051	-	608	21672320	glmS	BUsg027	-	glucosamine--fructose-6-phosphate aminotransferase
27	 25.69	0	28115..29500	-	461	21672321	glmU	BUsg028	-	UDP-N-acetylglucosamine pyrophosphorylase
28	 24.97	0	29642..30466	+	274	21672322	yigL	BUsg029	-	hypothetical protein
29	 27.58	0	30453..31391	-	312	21672323	metR	BUsg030	-	transcriptional activator protein MetR
30	 28.54	0	31532..33805	+	757	21672324	metE	BUsg031	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
31	 26.69	0	33999..35579	-	526	21672325	purH	BUsg032	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
32	 26.37	0	35721..35993	-	90	21672326	hupA	BUsg033	-	DNA-binding protein HU-alpha
33	 32.37	+1	36463..40704	-	1413	21672327	rpoC	BUsg034	-	DNA-directed RNA polymerase subunit beta'
34	 31.15	+1	40773..44801	-	1342	21672328	rpoB	BUsg035	-	DNA-directed RNA polymerase subunit beta
35	 31.03	+1	45007..45396	-	129	30410810	rplL	BUsg036	-	50S ribosomal protein L7/L12
36	 26.91	0	45446..45943	-	165	21672330	rplJ	BUsg037	-	50S ribosomal protein L10
37	 28.88	0	46191..46886	-	231	21672331	rplA	BUsg038	-	50S ribosomal protein L1
38	 30.54	+1	46888..47316	-	142	21672332	rplK	BUsg039	-	50S ribosomal protein L11
39	 30.95	+1	47344..47889	-	181	21672333	nusG	BUsg040	-	transcription antitermination protein NusG
40	 23.18	0	47894..48277	-	127	21672334	secE	BUsg041	-	preprotein translocase subunit SecE
41	 22.51	0	49078..50112	-	344	21672335	murB	BUsg042	-	UDP-N-acetylenolpyruvoylglucosamine reductase
42	 24.69	0	50249..51127	+	292	21672336	metF	BUsg043	-	5,10-methylenetetrahydrofolate reductase
43	 26.18	0	51160..52305	-	381	21672337	argE	BUsg044	-	acetylornithine deacetylase
44	 27.06	0	52469..53473	+	334	21672338	argC	BUsg045	-	N-acetyl-gamma-glutamyl-phosphate reductase
45	 30.76	+1	53489..54265	+	258	21672339	argB	BUsg046	-	acetylglutamate kinase
46	 32.17	+1	54294..55499	+	401	21672340	argG	BUsg047	-	argininosuccinate synthase
47	 29.13	0	55540..56919	+	459	21672341	argH	BUsg048	-	argininosuccinate lyase
48	 18.69	-1	57050..57493	+	147	21672342	yibN	BUsg049	-	hypothetical protein
49	 22.58	0	57569..58033	+	154	21672343	secB	BUsg050	-	preprotein translocase subunit SecB
50	 26.56	0	58127..58879	+	250	30410811	cysE	BUsg051	-	serine acetyltransferase
51	 31.28	+1	59048..60901	-	617	21672345	rpoD	BUsg052	-	RNA polymerase sigma factor RpoD
52	 23.56	0	61015..62754	-	579	21672346	dnaG	BUsg053	-	DNA primase
53	 35.19	+2	62833..63048	-	71	21672347	rpsU	BUsg054	-	30S ribosomal protein S21
54	 29.09	0	63281..64294	+	337	21672348	gcp	BUsg055	-	O-sialoglycoprotein endopeptidase
55	 32.24	+1	64337..64978	-	213	21672349	ribB	BUsg056	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
56	 26.56	0	65253..66197	-	314	21672350	rfaE	BUsg057	-	ADP-heptose synthase
57	 24.86	0	66445..67683	+	412	21672351	cca	BUsg058	-	tRNA CCA-pyrophosphorylase
58	 22.64	0	67690..68484	-	264	21672352	bacA	BUsg059	-	bacitracin resistance protein
59	 25.20	0	68547..69050	-	167	21672353	crr	BUsg060	-	glucose-specific PTS system component
60	 27.26	0	69106..70818	-	570	21672354	ptsI	BUsg061	-	phosphoenolpyruvate-protein phosphotransferase
61	 27.91	0	70962..71219	-	85	21672355	ptsH	BUsg062	-	phosphocarrier protein Hpr
62	 28.38	0	71358..72326	-	322	21672356	cysK	BUsg063	-	cysteine synthase A
63	 24.97	0	75095..76552	+	485	30410812	gltX	BUsg065	-	glutamyl-tRNA synthetase
64	 17.97	-2	77072..77377	-	101	21672358	fliE	BUsg066	-	flagellar hook-basal body complex protein FliE
65	 24.00	0	77554..79224	+	556	21672359	fliF	BUsg067	-	flagellar MS-ring protein
66	 21.79	-1	79221..80216	+	331	21672360	fliG	BUsg068	-	flagellar motor switch protein FliG
67	 19.97	-1	80209..80874	+	221	21672361	fliH	BUsg069	-	flagellar assembly protein FliH
68	 30.34	+1	80868..82235	+	455	30410813	fliI	BUsg070	-	flagellum-specific ATP synthase
69	 16.34	-2	82270..82728	+	152	21672363	fliJ	BUsg071	-	flagellar FliJ protein
70	 18.67	-1	82721..83866	+	381	21672364	fliK	BUsg072	-	flagellar hook-length control protein
71	 18.48	-1	83971..84906	+	311	21672365	fliM	BUsg073	-	flagellar motor switch protein FliM
72	 18.66	-1	84923..85324	+	133	21672366	fliN	BUsg074	-	flagellar motor switch protein FliN
73	 25.44	0	85330..86469	+	379	21672367	fliP	BUsg075	-	type III secretion system protein
74	 30.04	0	86513..86785	+	90	21672368	fliQ	BUsg076	-	flagellar biosynthetic protein FliQ
75	 21.24	-1	86785..87561	+	258	21672369	fliR	BUsg077	-	flagellar biosynthetic protein FliR
76	 22.62	0	87690..87857	-	55	21672370	rpmG	BUsg078	-	50S ribosomal protein L33
77	 29.54	0	87863..88099	-	78	21672371	rpmB	BUsg079	-	50S ribosomal protein L28
78	 17.96	-2	88296..91202	+	968	21672372	ytfN	BUsg080	-	hypothetical protein
79	 27.26	0	91194..91736	-	180	21672373	ppa	BUsg081	-	inorganic pyrophosphatase
80	 25.82	0	91921..93264	+	447	21672374	pmbA	BUsg082	-	hypothetical protein
81	 24.83	0	93737..94594	-	285	21672375	yraL	BUsg083	-	hypothetical protein
82	 29.25	0	94715..95938	+	407	21672376	fabB	BUsg084	-	3-oxoacyl-[acyl-carrier-protein] synthase I
83	 27.97	0	96082..97032	+	316	21672377	tal	BUsg085	-	transaldolase B
84	 31.23	+1	97083..99080	+	665	21672378	tkt	BUsg086	-	transketolase
85	 26.84	0	99143..100297	+	384	30410814	dapE	BUsg087	-	succinyl-diaminopimelate desuccinylase
86	 30.40	+1	100663..101547	-	294	21672380	dapA	BUsg088	-	dihydrodipicolinate synthase
87	 24.32	0	101886..102362	+	158	21672381	bcp	BUsg089	-	thioredoxin-dependent thiol peroxidase
88	 33.99	+1	102466..103527	-	353	21672382	aroC	BUsg090	-	chorismate synthase
89	 27.12	0	103730..104260	+	176	21672383	Y098	BUsg091	-	hypothetical protein
90	 29.67	0	104585..105484	+	299	21672384	hisG	BUsg092	-	ATP phosphoribosyltransferase
91	 27.45	0	105492..106799	+	435	21672385	hisD	BUsg093	-	histidinol dehydrogenase
92	 26.03	0	106796..107863	+	355	21672386	hisC	BUsg094	-	histidinol-phosphate aminotransferase
93	 27.15	0	107890..108957	+	355	21672387	hisB	BUsg095	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
94	 25.93	0	108958..109551	+	197	21672388	hisH	BUsg096	-	imidazole glycerol phosphate synthase subunit HisH
95	 25.85	0	109558..110292	+	244	21672389	hisA	BUsg097	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
96	 30.63	+1	110274..111050	+	258	21672390	hisF	BUsg098	-	imidazole glycerol phosphate synthase subunit HisF
97	 23.24	0	111044..111667	+	207	21672391	hisI	BUsg099	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
98	 27.99	0	112092..113513	+	473	21672392	gnd	BUsg100	-	6-phosphogluconate dehydrogenase
99	 29.04	0	113675..114256	+	193	21672393	dcd	BUsg101	-	deoxycytidine triphosphate deaminase
100	 24.36	0	114350..115987	+	545	21672394	metG	BUsg102	-	methionyl-tRNA synthetase
26.26	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.