IslandPath Analysis: Corynebacterium glutamicum R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.72   STD DEV: 3.72
Corynebacterium glutamicum R, complete genome - 1..3314179
3052 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.03	0	1..1575	+	524	145294043	dnaA	cgR_0001	-	chromosomal replication initiation protein
2	 42.20	-2	1594..1920	-	108	145294044	-	cgR_0002	-	hypothetical protein
3	 56.71	0	2292..3476	+	394	145294045	-	cgR_0003	-	DNA polymerase III subunit beta
4	 55.44	0	3585..4769	+	394	145294046	recF	cgR_0004	-	recombination protein F
5	 55.31	0	4766..5302	+	178	145294047	-	cgR_0005	-	hypothetical protein
6	 55.96	0	5435..7489	+	684	145294048	gyrB	cgR_0006	-	DNA gyrase subunit B
7	 51.19	0	7830..8798	+	322	145294049	-	cgR_0007	-	hypothetical protein
8	 49.26	-1	8795..9466	-	223	145294050	-	cgR_0008	-	hypothetical protein
9	 54.73	0	9471..9914	-	147	145294051	-	cgR_0009	-	hypothetical protein
10	 58.66	+1	10105..11178	-	357	145294052	-	cgR_0010	-	hypothetical protein
11	 54.92	0	11261..11524	-	87	145294053	-	cgR_0011	-	hypothetical protein
12	 61.90	+1	11521..11730	-	69	145294054	-	cgR_0012	-	hypothetical protein
13	 59.16	+1	11832..14402	+	856	145294055	-	cgR_0013	-	DNA gyrase subunit A
14	 50.14	-1	14406..14750	+	114	145294056	-	cgR_0014	-	hypothetical protein
15	 50.21	-1	15244..16440	+	398	145294057	-	cgR_0015	-	hypothetical protein
16	 50.61	-1	16467..17780	+	437	145294058	-	cgR_0016	-	hypothetical protein
17	 51.35	0	17786..18712	-	308	145294059	-	cgR_0017	-	hypothetical protein
18	 53.40	0	18907..20316	+	469	145294060	-	cgR_0018	-	hypothetical protein
19	 51.45	0	20826..21863	-	345	145294061	-	cgR_0019	-	hypothetical protein
20	 52.29	0	21934..22830	+	298	145294062	-	cgR_0020	-	hypothetical protein
21	 48.94	-1	22871..23293	+	140	145294063	-	cgR_0021	-	hypothetical protein
22	 53.04	0	23476..24348	-	290	145294064	-	cgR_0022	-	hypothetical protein
23	 52.34	0	24352..25098	-	248	145294065	-	cgR_0023	-	hypothetical protein
24	 53.49	0	25336..25707	+	123	145294066	-	cgR_0024	-	hypothetical protein
25	 55.46	0	25704..26702	+	332	145294067	-	cgR_0025	-	hypothetical protein
26	 54.24	0	27029..28984	+	651	145294068	-	cgR_0026	-	hypothetical protein
27	 49.88	-1	29651..30901	+	416	145294069	-	cgR_0027	-	hypothetical protein
28	 51.77	0	31102..33330	+	742	145294070	-	cgR_0028	-	hypothetical protein
29	 53.02	0	33327..34814	+	495	145294071	-	cgR_0029	-	hypothetical protein
30	 55.38	0	34804..35556	+	250	145294072	-	cgR_0030	-	hypothetical protein
31	 53.62	0	35553..36893	+	446	145294073	-	cgR_0031	-	hypothetical protein
32	 53.87	0	36883..38031	+	382	145294074	-	cgR_0032	-	hypothetical protein
33	 55.41	0	38006..39124	+	372	145294075	-	cgR_0033	-	hypothetical protein
34	 59.11	+1	39121..40152	-	343	145294076	-	cgR_0034	-	hypothetical protein
35	 49.34	-1	40149..41435	-	428	145294077	-	cgR_0035	-	hypothetical protein
36	 51.55	0	42155..43027	+	290	145294078	-	cgR_0036	-	hypothetical protein
37	 51.35	0	43027..44136	+	369	145294079	-	cgR_0037	-	hypothetical protein
38	 56.39	0	44709..45146	+	145	145294080	-	cgR_0038	-	hypothetical protein
39	 46.78	-2	45296..46819	-	507	145294081	-	cgR_0039	-	hypothetical protein
40	 59.09	+1	47232..48512	-	426	145294082	-	cgR_0040	-	hypothetical protein
41	 51.62	0	48594..49550	-	318	145294083	-	cgR_0041	-	hypothetical protein
42	 51.29	0	49547..50398	-	283	145294084	-	cgR_0042	-	hypothetical protein
43	 54.70	0	50428..51087	+	219	145294085	-	cgR_0043	-	hypothetical protein
44	 54.47	0	51130..52113	+	327	145294086	-	cgR_0044	-	hypothetical protein
45	 53.70	0	52110..53135	+	341	145294087	-	cgR_0045	-	hypothetical protein
46	 58.53	+1	53132..53893	+	253	145294088	-	cgR_0046	-	hypothetical protein
47	 55.84	0	53895..54725	-	276	145294089	-	cgR_0047	-	hypothetical protein
48	 57.07	0	54774..55346	+	190	145294090	-	cgR_0048	-	hypothetical protein
49	 49.13	-1	55426..56115	+	229	145294091	-	cgR_0049	-	hypothetical protein
50	 50.88	-1	56688..58112	-	474	145294092	-	cgR_0050	-	hypothetical protein
51	 52.08	0	58176..58607	+	143	145294093	-	cgR_0051	-	hypothetical protein
52	 55.77	0	58879..59034	-	51	145294094	-	cgR_0052	-	hypothetical protein
53	 51.65	0	59595..59867	-	90	145294095	-	cgR_0053	-	putative septation inhibitor protein
54	 59.09	+1	59980..61932	-	650	145294096	-	cgR_0054	-	hypothetical protein
55	 56.03	0	61929..63338	-	469	145294097	-	cgR_0055	-	hypothetical protein
56	 55.79	0	63342..64766	-	474	145294098	-	cgR_0056	-	hypothetical protein
57	 54.60	0	64763..66088	-	441	145294099	-	cgR_0057	-	hypothetical protein
58	 54.79	0	66085..67440	-	451	145294100	-	cgR_0058	-	hypothetical protein
59	 58.49	+1	67440..67904	-	154	145294101	-	cgR_0059	-	hypothetical protein
60	 50.95	-1	67921..68817	-	298	145294102	-	cgR_0060	-	hypothetical protein
61	 53.33	0	70422..72176	-	584	145294103	-	cgR_0061	-	hypothetical protein
62	 54.06	0	72209..73549	-	446	145294104	-	cgR_0062	-	hypothetical protein
63	 47.28	-2	73641..73934	-	97	145294105	-	cgR_0063	-	hypothetical protein
64	 54.48	0	73931..75580	-	549	145294106	-	cgR_0064	-	hypothetical protein
65	 48.33	-1	75667..76506	+	279	145294107	-	cgR_0065	-	hypothetical protein
66	 50.25	-1	76511..77314	-	267	145294108	-	cgR_0066	-	hypothetical protein
67	 56.98	0	77357..79504	+	715	145294109	-	cgR_0067	-	hypothetical protein
68	 58.93	+1	80263..81735	-	490	145294110	-	cgR_0068	-	hypothetical protein
69	 56.48	0	81844..82167	-	107	145294111	-	cgR_0069	-	hypothetical protein
70	 56.62	0	82192..82629	+	145	145294112	-	cgR_0070	-	hypothetical protein
71	 51.50	0	82789..84159	+	456	145294113	-	cgR_0071	-	hypothetical protein
72	 59.04	+1	84235..84981	-	248	145294114	-	cgR_0072	-	hypothetical protein
73	 48.64	-1	84991..85284	-	97	145294115	-	cgR_0073	-	hypothetical protein
74	 51.18	0	85285..85878	-	197	145294116	-	cgR_0074	-	hypothetical protein
75	 51.55	0	86004..86261	+	85	145294117	-	cgR_0075	-	hypothetical protein
76	 48.60	-1	86722..87579	+	285	145294118	-	cgR_0076	-	hypothetical protein
77	 52.91	0	87726..88568	+	280	145294119	-	cgR_0077	-	hypothetical protein
78	 54.20	0	88587..89300	+	237	145294120	-	cgR_0078	-	hypothetical protein
79	 54.44	0	89304..90980	+	558	145294121	-	cgR_0079	-	hypothetical protein
80	 56.68	0	91043..92164	-	373	145294122	-	cgR_0080	-	hypothetical protein
81	 49.11	-1	92247..92696	-	149	145294123	-	cgR_0081	-	hypothetical protein
82	 59.36	+1	92847..94118	+	423	145294124	-	cgR_0082	-	hypothetical protein
83	 54.98	0	94162..94854	-	230	145294125	-	cgR_0083	-	hypothetical protein
84	 57.30	0	95384..96643	+	419	145294126	-	cgR_0084	-	hypothetical protein
85	 55.56	0	96737..96844	+	35	145294127	-	cgR_0085	-	hypothetical protein
86	 53.23	0	96904..97290	-	128	145294128	-	cgR_0086	-	hypothetical protein
87	 59.46	+1	97373..98953	-	526	145294129	-	cgR_0087	-	hypothetical protein
88	 53.75	0	99122..100816	+	564	145294130	-	cgR_0088	-	hypothetical protein
89	 55.25	0	100816..101472	+	218	145294131	-	cgR_0089	-	hypothetical protein
90	 51.91	0	101469..102383	-	304	145294132	-	cgR_0090	-	hypothetical protein
91	 50.93	-1	102499..102930	+	143	145294133	-	cgR_0091	-	hypothetical protein
92	 54.63	0	103145..104149	+	334	145294134	-	cgR_0092	-	biotin synthase
93	 57.50	0	104161..104400	+	79	145294135	-	cgR_0093	-	hypothetical protein
94	 57.60	0	104352..104693	+	113	145294136	-	cgR_0094	-	hypothetical protein
95	 53.37	0	110791..112242	-	483	145294137	-	cgR_0095	-	hypothetical protein
96	 52.80	0	112362..113609	-	415	145294138	-	cgR_0096	-	hypothetical protein
97	 57.09	0	113853..114374	-	173	145294139	-	cgR_0097	-	hypothetical protein
98	 58.68	+1	114466..115392	+	308	145294140	-	cgR_0098	-	hypothetical protein
99	 55.08	0	115734..116708	-	324	145294141	-	cgR_0099	-	hypothetical protein
100	 56.81	0	116718..117620	-	300	145294142	-	cgR_0100	-	hypothetical protein
54.72	MEAN

3.72	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.