IslandPath Analysis: Rhizobium leguminosarum bv. trifolii WSM2304



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.87   STD DEV: 3.32
Rhizobium leguminosarum bv. trifolii WSM2304, complete genome - 1..4537948
4325 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.96	0	620..2170	+	516	209547613	-	Rleg2_0001	-	chromosomal replication initiator protein DnaA
2	 62.33	0	2336..3418	+	360	209547614	-	Rleg2_0002	-	Saccharopine dehydrogenase
3	 64.18	0	3481..4686	-	401	209547615	-	Rleg2_0003	-	oxygen-independent coproporphyrinogen III oxidase
4	 63.88	0	4696..5340	-	214	209547616	-	Rleg2_0004	-	Ham1 family protein
5	 61.74	0	5341..5766	-	141	209547617	-	Rleg2_0005	-	Glyoxalase/bleomycin resistance protein/dioxygenase
6	 63.61	0	5763..6482	-	239	209547618	-	Rleg2_0006	-	ribonuclease PH
7	 63.73	0	6610..7698	+	362	209547619	-	Rleg2_0007	-	heat-inducible transcription repressor HrcA
8	 64.93	0	7808..8440	+	210	209547620	-	Rleg2_0008	-	Ribulose-phosphate 3-epimerase
9	 62.63	0	8472..9437	-	321	209547621	-	Rleg2_0009	-	Inosine/uridine-preferring nucleoside hydrolase
10	 61.27	0	9655..10080	+	141	209547622	-	Rleg2_0010	-	heat shock protein Hsp20
11	 58.14	-1	10128..10385	+	85	209547623	-	Rleg2_0011	-	protein of unknown function DUF1150
12	 62.39	0	10780..11481	-	233	209547624	-	Rleg2_0012	-	tRNA (guanine-N(7)-)-methyltransferase
13	 63.20	0	11490..12728	-	412	209547625	-	Rleg2_0013	-	Methionine adenosyltransferase
14	 57.14	-1	12907..13326	-	139	209547626	-	Rleg2_0014	-	transcriptional regulator, XRE family
15	 61.68	0	13475..15079	-	534	209547627	-	Rleg2_0015	-	apolipoprotein N-acyltransferase
16	 65.71	+1	15148..16299	-	383	209547628	-	Rleg2_0016	-	transporter-associated region
17	 58.91	0	16296..16811	-	171	209547629	-	Rleg2_0017	-	protein of unknown function UPF0054
18	 63.63	0	16811..17863	-	350	209547630	-	Rleg2_0018	-	PhoH family protein
19	 62.77	0	17882..19291	-	469	209547631	-	Rleg2_0019	-	RNA modification enzyme, MiaB family
20	 65.91	+1	19341..20138	-	265	209547632	-	Rleg2_0020	-	phospholipid/glycerol acyltransferase
21	 62.00	0	20166..20594	-	142	209547633	-	Rleg2_0021	-	ferric uptake regulator, Fur family
22	 63.84	0	20678..21172	-	164	209547634	-	Rleg2_0022	-	GCN5-related N-acetyltransferase
23	 64.71	0	21175..21837	-	220	209547635	-	Rleg2_0023	-	peptidase M22 glycoprotease
24	 59.08	0	21927..22493	-	188	209547636	-	Rleg2_0024	-	Scaffold protein Nfu/NifU
25	 64.63	0	22598..23089	-	163	209547637	-	Rleg2_0025	-	UspA domain protein
26	 62.44	0	23199..24263	-	354	209547638	-	Rleg2_0026	-	tryptophanyl-tRNA synthetase
27	 63.66	0	24385..24783	-	132	209547639	-	Rleg2_0027	-	Glyoxalase/bleomycin resistance protein/dioxygenase
28	 63.64	0	24971..25399	+	142	209547640	-	Rleg2_0028	-	Peptidase M15A
29	 64.40	0	25612..27198	-	528	209547641	-	Rleg2_0029	-	integral membrane protein MviN
30	 63.61	0	27224..30130	-	968	209547642	-	Rleg2_0030	-	UTP-GlnB uridylyltransferase, GlnD
31	 61.23	0	30238..30513	-	91	209547643	-	Rleg2_0031	-	hypothetical protein
32	 66.25	+1	30528..33170	-	880	209547644	-	Rleg2_0032	-	DNA mismatch repair protein MutS
33	 63.65	0	33368..35653	+	761	209547645	-	Rleg2_0033	-	Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase
34	 59.90	0	35839..36828	+	329	209547646	-	Rleg2_0034	-	transcriptional regulator, AraC family
35	 63.13	0	36940..37815	-	291	209547647	-	Rleg2_0035	-	hypothetical protein
36	 65.96	+1	37924..40203	-	759	209547648	-	Rleg2_0036	-	integral membrane sensor hybrid histidine kinase
37	 60.32	0	40259..40762	-	167	209547649	-	Rleg2_0037	-	lipoprotein signal peptidase
38	 65.51	+1	40759..41619	-	286	209547650	-	Rleg2_0038	-	tRNA/rRNA methyltransferase (SpoU)
39	 66.30	+1	41616..42713	-	365	209547651	-	Rleg2_0039	-	putative SAM-dependent methyltransferase protein
40	 64.25	0	43120..43575	+	151	209547652	-	Rleg2_0040	-	carbon monoxide dehydrogenase subunit G
41	 60.92	0	43639..44073	+	144	209547653	-	Rleg2_0041	-	GCN5-related N-acetyltransferase
42	 62.76	0	44106..44438	-	110	209547654	-	Rleg2_0042	-	hypothetical protein
43	 61.67	0	44603..44902	-	99	209547655	-	Rleg2_0043	-	integration host factor, beta subunit
44	 61.41	0	44932..45882	-	316	209547656	-	Rleg2_0044	-	signal peptide peptidase SppA, 36K type
45	 59.46	0	46107..46772	+	221	209547657	-	Rleg2_0045	-	protein of unknown function DUF1239
46	 60.06	0	46788..47423	+	211	209547658	-	Rleg2_0046	-	OstA family protein
47	 63.84	0	47464..48240	+	258	209547659	-	Rleg2_0047	-	ABC transporter related
48	 63.34	0	48393..49955	+	520	209547660	-	Rleg2_0048	-	RNA polymerase, sigma 54 subunit, RpoN
49	 62.62	0	50045..50959	+	304	209547661	-	Rleg2_0049	-	protein of unknown function DUF6 transmembrane
50	 56.77	-1	51253..51828	+	191	209547662	-	Rleg2_0050	-	sigma 54 modulation protein/ribosomal protein S30EA
51	 61.51	0	51898..52362	+	154	209547663	-	Rleg2_0051	-	PTS IIA-like nitrogen-regulatory protein PtsN
52	 63.37	0	52434..54770	-	778	209547664	-	Rleg2_0052	-	methyl-accepting chemotaxis sensory transducer
53	 65.44	+1	55072..55971	-	299	209547665	-	Rleg2_0053	-	PfkB domain protein
54	 63.07	0	56023..57246	-	407	209547666	-	Rleg2_0054	-	protein of unknown function DUF195
55	 59.50	0	57537..58052	+	171	209547667	-	Rleg2_0055	-	peptide deformylase
56	 55.44	-1	58117..58401	+	94	209547668	-	Rleg2_0056	-	hypothetical protein
57	 56.50	-1	58398..58820	+	140	209547669	-	Rleg2_0057	-	PilT protein domain protein
58	 66.03	+1	58841..59776	+	311	209547670	-	Rleg2_0058	-	methionyl-tRNA formyltransferase
59	 66.79	+1	59776..60582	+	268	209547671	-	Rleg2_0059	-	tRNA pseudouridine synthase A
60	 63.32	0	60589..61185	-	198	209547672	-	Rleg2_0060	-	hypothetical protein
61	 65.75	+1	61172..62365	-	397	209547673	-	Rleg2_0061	-	succinyl-diaminopimelate desuccinylase
62	 64.58	0	62465..63325	-	286	209547674	-	Rleg2_0062	-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
63	 62.40	0	63519..64385	+	288	209547675	-	Rleg2_0063	-	hypothetical protein
64	 62.77	0	64581..65222	-	213	209547676	-	Rleg2_0064	-	Calcium-binding EF-hand-containing protein
65	 59.38	0	65343..66056	-	237	209547677	-	Rleg2_0065	-	pyrimidine 5'-nucleotidase
66	 63.69	0	66160..67233	+	357	209547678	-	Rleg2_0066	-	methylated-DNA/protein-cysteine methyltransferase
67	 62.91	0	67230..68000	+	256	209547679	-	Rleg2_0067	-	putative PEP phosphonomutase protein
68	 63.71	0	68067..69215	-	382	209547680	-	Rleg2_0068	-	FMN-dependent alpha-hydroxy acid dehydrogenase
69	 62.62	0	69323..70285	-	320	209547681	-	Rleg2_0069	-	fatty acid desaturase
70	 59.02	0	70457..70822	+	121	209547682	-	Rleg2_0070	-	transcriptional regulator, ArsR family
71	 62.95	0	70998..71885	-	295	209547683	-	Rleg2_0071	-	acetylglutamate kinase
72	 59.81	0	72029..72568	+	179	209547684	-	Rleg2_0072	-	RNA polymerase, sigma-24 subunit, ECF subfamily
73	 65.42	+1	72565..73284	+	239	209547685	-	Rleg2_0073	-	hypothetical protein
74	 61.08	0	73426..73980	+	184	209547686	-	Rleg2_0074	-	beta-Ig-H3/fasciclin
75	 60.63	0	74078..75154	-	358	209547687	-	Rleg2_0075	-	signal transduction histidine kinase
76	 54.71	-2	75420..75695	-	91	209547688	-	Rleg2_0076	-	hypothetical protein
77	 61.85	0	75696..75965	-	89	209547689	-	Rleg2_0077	-	hypothetical protein
78	 56.19	-1	76098..76307	-	69	209547690	-	Rleg2_0078	-	cold-shock DNA-binding domain protein
79	 63.61	0	76667..77320	-	217	209547691	-	Rleg2_0079	-	GTP-binding protein HSR1-related
80	 60.93	0	77463..79256	-	597	209547692	-	Rleg2_0080	-	60 kDa inner membrane insertion protein
81	 60.70	0	79256..79657	-	133	209547693	-	Rleg2_0081	-	ribonuclease P protein component
82	 63.70	0	79679..79813	-	44	209547694	-	Rleg2_0082	-	ribosomal protein L34
83	 64.96	0	80232..82229	+	665	209547695	-	Rleg2_0083	-	methyl-accepting chemotaxis sensory transducer
84	 64.32	0	82575..84107	+	510	209547696	-	Rleg2_0084	-	integral membrane sensor signal transduction histidine kinase
85	 53.16	-2	84528..84764	+	78	209547697	-	Rleg2_0086	-	hypothetical protein
86	 55.68	-1	84772..85044	+	90	209547698	-	Rleg2_0087	-	plasmid stabilization system
87	 50.46	-2	85190..85843	+	217	209547699	-	Rleg2_0088	-	putative DNA methylase protein
88	 59.43	0	85896..86282	-	128	209547700	-	Rleg2_0089	-	hypothetical protein
89	 58.67	0	86544..87206	-	220	209547701	-	Rleg2_0090	-	hypothetical protein
90	 60.56	0	87391..87570	+	59	209547702	-	Rleg2_0091	-	hypothetical protein
91	 58.25	-1	87586..87882	+	98	209547703	-	Rleg2_0092	-	hypothetical protein
92	 68.84	+2	87910..88785	-	291	209547704	-	Rleg2_0093	-	transcriptional regulator, LysR family
93	 64.26	0	88900..89604	+	234	209547705	-	Rleg2_0094	-	short-chain dehydrogenase/reductase SDR
94	 63.55	0	89609..90217	+	202	209547706	-	Rleg2_0095	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
95	 62.73	0	90249..91721	-	490	209547707	-	Rleg2_0096	-	hypothetical protein
96	 61.90	0	91991..92578	+	195	209547708	-	Rleg2_0097	-	hypothetical protein
97	 59.66	0	92772..93470	-	232	209547709	-	Rleg2_0098	-	Methyltransferase type 11
98	 62.62	0	93637..93957	+	106	209547710	-	Rleg2_0099	-	hypothetical protein
99	 63.17	0	94148..94519	+	123	209547711	-	Rleg2_0100	-	hypothetical protein
100	 58.92	0	94674..94970	+	98	209547712	-	Rleg2_0101	-	hypothetical protein
61.87	MEAN

3.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.