IslandPath Analysis: Shewanella sp. MR-4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.43   STD DEV: 3.72
Shewanella sp. MR-4, complete genome - 1..4706287
3924 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 46.06	0	79..1461	+	460	113968347	dnaA	Shewmr4_0001	-	chromosomal replication initiation protein
2	 45.96	0	1482..2582	+	366	113968348	-	Shewmr4_0002	-	DNA polymerase III, beta subunit
3	 45.71	0	2744..3826	+	360	113968349	-	Shewmr4_0003	-	DNA replication and repair protein RecF
4	 48.59	0	3843..6260	+	805	113968350	-	Shewmr4_0004	-	DNA gyrase subunit B
5	 46.73	0	6341..6997	-	218	113968351	-	Shewmr4_0005	-	glutathione S-transferase domain-containing protein
6	 47.82	0	7124..7972	+	282	113968352	-	Shewmr4_0006	-	LysR family transcriptional regulator
7	 45.98	0	8128..9171	+	347	113968353	-	Shewmr4_0007	-	putative signal transduction protein
8	 48.52	0	9235..11301	-	688	113968354	glyS	Shewmr4_0008	-	glycyl-tRNA synthetase subunit beta
9	 49.45	0	11311..12216	-	301	113968355	glyQ	Shewmr4_0009	-	glycyl-tRNA synthetase subunit alpha
10	 44.50	-1	12335..12907	+	190	113968356	-	Shewmr4_0010	-	DNA-3-methyladenine glycosylase I
11	 47.57	0	12996..16184	-	1062	113968357	-	Shewmr4_0011	-	amidohydrolase
12	 52.28	+1	16381..16818	-	145	113968358	-	Shewmr4_0012	-	hypothetical protein
13	 45.93	0	16854..17099	-	81	113968359	-	Shewmr4_0013	-	SirA family protein
14	 44.89	0	17258..18451	-	397	113968360	-	Shewmr4_0014	-	diguanylate cyclase
15	 45.27	0	18661..19464	-	267	113968361	-	Shewmr4_0015	-	integrase catalytic subunit
16	 43.43	-1	19494..19889	-	131	113968362	-	Shewmr4_0016	-	transposase
17	 51.63	0	19987..21150	-	387	113968363	fadA	Shewmr4_0017	-	3-ketoacyl-CoA thiolase
18	 49.51	0	21173..23323	-	716	113968364	fadB	Shewmr4_0018	-	multifunctional fatty acid oxidation complex subunit alpha
19	 49.09	0	23767..25086	+	439	113968365	-	Shewmr4_0019	-	proline dipeptidase
20	 48.46	0	25102..25716	+	204	113968366	-	Shewmr4_0020	-	hypothetical protein
21	 50.69	0	25794..27251	+	485	113968367	-	Shewmr4_0021	-	TrkH family potassium uptake protein
22	 47.05	0	27253..27777	+	174	113968368	-	Shewmr4_0022	-	protoporphyrinogen oxidase
23	 44.98	0	27840..28148	-	102	113968369	-	Shewmr4_0023	-	ArsR family transcriptional regulator
24	 49.91	0	28348..28902	+	184	113968370	-	Shewmr4_0024	-	protoporphyrinogen oxidase
25	 50.87	0	28949..30391	-	480	113968371	-	Shewmr4_0025	-	TrkH family potassium uptake protein
26	 51.70	0	30403..31812	-	469	113968372	trkA	Shewmr4_0026	-	potassium transporter peripheral membrane component
27	 51.16	0	31828..33117	-	429	113968373	-	Shewmr4_0027	-	sun protein
28	 52.35	+1	33117..34073	-	318	113968374	-	Shewmr4_0028	-	methionyl-tRNA formyltransferase
29	 45.76	0	34089..34595	-	168	113968375	-	Shewmr4_0029	-	peptide deformylase
30	 47.64	0	34721..35845	+	374	113968376	-	Shewmr4_0030	-	peptidoglycan-binding LysM
31	 48.57	0	35929..36945	+	338	113968377	-	Shewmr4_0031	-	DNA protecting protein DprA
32	 43.61	-1	36948..37424	+	158	113968378	-	Shewmr4_0032	-	hypothetical protein
33	 47.52	0	37547..38110	+	187	113968379	-	Shewmr4_0033	-	DNA topoisomerase type IA Zn finger domain-containing protein
34	 49.03	0	38249..38815	+	188	113968380	-	Shewmr4_0034	-	translation factor SUA5
35	 49.83	0	38845..39753	+	302	113968381	-	Shewmr4_0035	-	coproporphyrinogen III oxidase
36	 45.43	0	39785..40222	-	145	113968382	-	Shewmr4_0036	-	globin
37	 52.79	+1	40394..41272	+	292	113968383	-	Shewmr4_0037	-	shikimate 5-dehydrogenase
38	 45.29	0	41293..41568	+	91	113968384	-	Shewmr4_0038	-	hypothetical protein
39	 50.46	0	41625..42173	-	182	113968385	-	Shewmr4_0039	-	carbonic anhydrase
40	 47.06	0	48200..48454	+	84	113968386	-	Shewmr4_0040	-	hypothetical protein
41	 47.59	0	48476..48931	+	151	113968387	-	Shewmr4_0041	-	BadM/Rrf2 family transcriptional regulator
42	 49.47	0	48906..49661	-	251	113968388	-	Shewmr4_0042	-	protein of unknown function DUF610, YibQ
43	 48.01	0	49674..50879	-	401	113968389	-	Shewmr4_0043	-	C-terminal processing peptidase-3
44	 50.94	0	52071..53615	-	514	113968390	-	Shewmr4_0045	-	phosphoglyceromutase
45	 41.38	-1	53881..54315	+	144	113968391	-	Shewmr4_0046	-	rhodanese domain-containing protein
46	 46.71	0	54576..55061	+	161	113968392	-	Shewmr4_0047	-	preprotein translocase subunit SecB
47	 52.80	+1	55066..56082	+	338	113968393	gpsA	Shewmr4_0048	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
48	 51.90	0	56321..57505	+	394	113968394	-	Shewmr4_0049	-	hypothetical protein
49	 38.02	-2	58053..59630	+	525	113968395	-	Shewmr4_0050	-	hypothetical protein
50	 50.15	0	59838..61199	-	453	113968396	-	Shewmr4_0051	-	TrkH family potassium uptake protein
51	 52.93	+1	61201..61899	-	232	113968397	-	Shewmr4_0052	-	TrkA domain-containing protein
52	 52.46	+1	61944..62633	-	229	113968398	-	Shewmr4_0053	-	two component transcriptional regulator
53	 52.44	+1	62634..63680	-	348	113968399	-	Shewmr4_0054	-	periplasmic sensor signal transduction histidine kinase
54	 56.28	+2	63908..64831	-	307	113968400	-	Shewmr4_0055	-	pirin domain-containing protein
55	 48.63	0	65316..66989	+	557	113968401	-	Shewmr4_0056	-	signal transduction histidine kinase, LytS
56	 47.13	0	66983..67714	+	243	113968402	-	Shewmr4_0057	-	response regulator receiver protein
57	 49.08	0	67822..69066	+	414	113968403	-	Shewmr4_0058	-	major facilitator transporter
58	 36.71	-2	69156..69776	-	206	113968404	-	Shewmr4_0059	-	hypothetical protein
59	 49.86	0	70202..70939	+	245	113968405	-	Shewmr4_0060	-	hypothetical protein
60	 50.62	0	71040..71519	+	159	113968406	-	Shewmr4_0061	-	NLP/P60 protein
61	 54.52	+1	71544..72992	+	482	113968407	-	Shewmr4_0062	-	major facilitator transporter
62	 47.91	0	73081..74109	+	342	113968408	-	Shewmr4_0063	-	LacI family transcription regulator
63	 47.54	0	74168..75652	-	494	113968409	-	Shewmr4_0064	-	sucrose phosphorylase
64	 46.52	0	75909..77129	+	406	113968410	-	Shewmr4_0065	-	major facilitator transporter
65	 48.64	0	77389..79785	+	798	113968411	-	Shewmr4_0066	-	TonB-dependent receptor
66	 49.48	0	79878..80837	+	319	113968412	-	Shewmr4_0067	-	ribokinase-like domain-containing protein
67	 54.31	+1	81043..81576	+	177	113968413	mogA	Shewmr4_0068	-	molybdenum cofactor biosynthesis protein
68	 52.97	+1	81610..81828	-	72	113968414	-	Shewmr4_0069	-	hypothetical protein
69	 49.04	0	81980..83023	+	347	113968415	-	Shewmr4_0070	-	transcriptional regulator
70	 48.66	0	83027..83287	-	86	113968416	-	Shewmr4_0071	-	hypothetical protein
71	 52.54	+1	83337..84476	-	379	113968417	-	Shewmr4_0072	-	transport protein, putative
72	 55.51	+1	84565..85299	-	244	113968418	-	Shewmr4_0073	-	ABC transporter related
73	 54.17	+1	85302..86909	-	535	113968419	-	Shewmr4_0074	-	TAP domain-containing protein
74	 53.83	+1	87002..87367	+	121	113968420	-	Shewmr4_0075	-	GntR family transcriptional regulator
75	 53.82	+1	87414..88277	+	287	113968421	-	Shewmr4_0076	-	ABC transporter related
76	 51.64	0	88274..89584	+	436	113968422	-	Shewmr4_0077	-	hypothetical protein
77	 51.34	0	89713..91506	+	597	113968423	-	Shewmr4_0078	-	AMP-dependent synthetase and ligase
78	 49.48	0	91647..94136	+	829	113968424	-	Shewmr4_0079	-	MORN repeat-containing protein
79	 50.12	0	94244..94654	+	136	113968425	-	Shewmr4_0080	-	thioesterase superfamily protein
80	 50.64	0	94772..95320	+	182	113968426	-	Shewmr4_0081	-	HPP family protein
81	 44.85	0	95572..95979	-	135	113968427	-	Shewmr4_0082	-	hypothetical protein
82	 49.24	0	96029..96292	-	87	113968428	-	Shewmr4_0083	-	hypothetical protein
83	 46.67	0	96352..96816	-	154	113968429	-	Shewmr4_0084	-	thioesterase superfamily protein
84	 48.31	0	96964..97317	+	117	113968430	-	Shewmr4_0085	-	MerR family transcriptional regulator
85	 50.43	0	97389..97967	+	192	113968431	-	Shewmr4_0086	-	NAD(P)H dehydrogenase (quinone)
86	 48.99	0	97983..98378	+	131	113968432	-	Shewmr4_0087	-	glutathione-dependent formaldehyde-activating, GFA
87	 46.78	0	98382..98738	+	118	113968433	-	Shewmr4_0088	-	MerR family transcriptional regulator
88	 44.19	-1	98922..99308	+	128	113968434	-	Shewmr4_0089	-	carboxymuconolactone decarboxylase
89	 48.75	0	99360..100040	-	226	113968435	-	Shewmr4_0090	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
90	 48.97	0	100404..100838	+	144	113968436	-	Shewmr4_0091	-	hypothetical protein
91	 45.07	0	100931..101944	+	337	113968437	-	Shewmr4_0092	-	hypothetical protein
92	 50.41	0	102073..102804	+	243	113968438	-	Shewmr4_0093	-	hypothetical protein
93	 51.62	0	102895..104802	-	635	113968439	-	Shewmr4_0094	-	hypothetical protein
94	 51.52	0	105072..105500	+	142	113968440	-	Shewmr4_0095	-	MarR family transcriptional regulator
95	 50.20	0	105536..106282	+	248	113968441	-	Shewmr4_0096	-	FAD-binding 9, siderophore-interacting domain-containing protein
96	 52.32	+1	106986..108212	-	408	113968442	-	Shewmr4_0097	-	imidazolonepropionase
97	 55.51	+1	108410..109117	+	235	113968443	-	Shewmr4_0098	-	histidine utilization repressor
98	 55.06	+1	109241..110911	+	556	113968444	-	Shewmr4_0099	-	urocanate hydratase
99	 53.50	+1	110959..112500	+	513	113968445	-	Shewmr4_0100	-	histidine ammonia-lyase
100	 50.00	0	113109..113690	+	193	113968446	-	Shewmr4_0101	-	twin-arginine translocation pathway signal
48.43	MEAN

3.72	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.