IslandPath Analysis: Rickettsia akari str. Hartford



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.80   STD DEV: 4.23
Rickettsia akari str. Hartford, complete genome - 1..1231060
1259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.68	0	1..822	+	273	157825126	-	A1C_00005	-	hypothetical protein
2	 30.71	0	964..1383	+	139	157825127	-	A1C_00010	-	thioredoxin
3	 29.87	0	1389..2138	+	249	157825128	-	A1C_00015	-	O-antigen export system ATP-binding protein RfbE
4	 29.34	0	2139..2915	+	258	157825129	-	A1C_00020	-	O-antigen export system permease protein RfbA
5	 32.00	0	2912..5983	+	1023	157825130	-	A1C_00025	-	putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase
6	 36.40	+1	6021..6737	-	238	157825131	-	A1C_00030	-	UDP-N-acetylglucosamine acyltransferase
7	 40.00	+1	6725..6814	-	29	157825132	fabZ	A1C_00035	-	(3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase
8	 33.33	0	6801..6926	+	41	157825133	-	A1C_00040	-	hypothetical protein
9	 34.93	0	6824..7261	-	145	157825134	-	A1C_00045	-	(3R)-hydroxymyristoyl-ACP dehydratase
10	 34.87	0	7480..8520	-	346	157825135	lpxD	A1C_00050	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
11	 30.04	0	8972..9427	+	151	157825136	-	A1C_00055	-	esterase of the alpha-beta hydrolase superfamily protein
12	 27.27	-1	9637..9768	-	43	157825137	-	A1C_00060	-	hypothetical protein
13	 36.94	+1	10272..12848	-	858	157825138	-	A1C_00065	-	clpB protein
14	 28.70	0	14156..14263	+	35	157825139	-	A1C_00080	-	hypothetical protein
15	 23.81	-1	14247..14372	+	41	157825140	-	A1C_00085	-	hypothetical protein
16	 31.48	0	14481..14696	+	71	157825141	-	A1C_00090	-	hypothetical protein
17	 37.05	+1	14696..15421	+	241	157825142	-	A1C_00095	-	acetoacetyl-CoA reductase
18	 28.66	0	15625..16116	+	163	157825143	-	A1C_00100	-	hypothetical protein
19	 33.79	0	16130..17452	+	440	157825144	-	A1C_00105	-	hypothetical protein
20	 26.67	-1	17683..17907	+	74	157825145	-	A1C_00110	-	hypothetical protein
21	 34.21	0	17931..18044	+	37	157825146	-	A1C_00115	-	hypothetical protein
22	 36.36	+1	18710..18874	-	54	157825147	-	A1C_00120	-	cell surface antigen-like protein Sca10
23	 34.81	0	18801..19340	-	179	157825148	-	A1C_00125	-	cell surface antigen-like protein Sca10
24	 40.58	+2	19433..19570	-	45	157825149	-	A1C_00130	-	cell surface antigen-like protein Sca10
25	 37.21	+1	19767..20153	-	128	157825150	-	A1C_00135	-	cell surface antigen-like protein Sca10
26	 42.29	+2	20251..20529	+	92	157825151	-	A1C_00140	-	hypothetical protein
27	 47.01	+2	20543..20659	-	38	157825152	-	A1C_00145	-	hypothetical protein
28	 30.77	0	21109..21303	-	64	157825153	-	A1C_00150	-	cell surface antigen-like protein Sca10
29	 38.36	+1	21471..21629	-	52	157825154	-	A1C_00155	-	cell surface antigen-like protein Sca10
30	 25.71	-1	22115..22783	-	222	157825155	-	A1C_00160	-	hypothetical protein
31	 31.93	0	23018..23587	+	189	157825156	-	A1C_00165	-	hypothetical protein
32	 27.43	-1	23598..24173	-	191	157825157	-	A1C_00170	-	Sco2 protein precursor
33	 32.05	0	24487..24720	+	77	157825158	-	A1C_00175	-	hypothetical protein
34	 24.79	-1	24707..24823	+	38	157825159	-	A1C_00180	-	hypothetical protein
35	 27.19	-1	25742..26197	+	151	157825160	-	A1C_00185	-	hypothetical protein
36	 25.64	-1	26340..26573	+	77	157825161	-	A1C_00190	-	hypothetical protein
37	 31.09	0	26701..27369	+	222	157825162	-	A1C_00195	-	hypothetical protein
38	 28.21	0	27564..27875	+	103	157825163	-	A1C_00200	-	folate synthesis bifunctional protein
39	 27.66	0	28224..28364	+	46	157825164	-	A1C_00205	-	dihydrofolate reductase
40	 31.39	0	29260..30342	+	360	157825165	recF	A1C_00220	-	recombination protein F
41	 32.46	0	30588..32192	+	534	157825166	-	A1C_00225	-	hypothetical protein
42	 42.18	+2	32199..32345	+	48	157825167	-	A1C_00230	-	hypothetical protein
43	 35.02	0	32402..32935	-	177	157825168	-	A1C_00235	-	transcriptional regulator
44	 32.69	0	33114..34052	+	312	157825169	-	A1C_00240	-	protein-disulfide isomerase
45	 28.68	0	34211..34468	+	85	157825170	-	A1C_00245	-	hypothetical protein
46	 30.45	0	34465..35193	+	242	157825171	-	A1C_00250	-	F0F1 ATP synthase subunit A
47	 38.22	+1	35388..35612	+	74	157825172	-	A1C_00255	-	F0F1 ATP synthase subunit C
48	 25.95	-1	35630..36103	+	157	157825173	-	A1C_00260	-	F0F1 ATP synthase subunit B'
49	 29.70	0	36103..36597	+	164	157825174	-	A1C_00265	-	F0F1 ATP synthase subunit B
50	 19.82	-2	36698..36808	-	36	157825175	-	A1C_00270	-	hypothetical protein
51	 22.94	-2	37122..37631	-	169	157825176	-	A1C_00275	-	TPR repeat-containing protein
52	 34.09	0	38026..42537	-	1503	157825177	-	A1C_00280	-	cell surface antigen
53	 30.03	0	43287..43862	+	191	157825178	-	A1C_00285	-	ComEC/Rec2 family protein
54	 30.62	0	44125..44382	+	85	157825179	-	A1C_00290	-	ComEC/Rec2-related protein
55	 29.62	0	44786..45943	+	385	157825180	-	A1C_00295	-	Poly(A) polymerase
56	 28.45	0	46006..46845	+	279	157825181	-	A1C_00300	-	zinc/manganese ABC transporter substrate binding protein
57	 31.40	0	46833..47348	+	171	157825182	-	A1C_00305	-	hypothetical protein
58	 27.78	0	47353..47550	-	65	157825183	-	A1C_00310	-	antitoxin of toxin-antitoxin system StbD
59	 29.47	0	47579..48535	-	318	157825184	-	A1C_00315	-	hypothetical protein
60	 40.14	+1	48532..49515	-	327	157825185	-	A1C_00320	-	nifR3 family TIM-barrel protein
61	 28.44	0	50123..50449	-	108	157825186	-	A1C_00325	-	transposase IS200-family protein
62	 34.25	0	51227..51445	+	72	157825187	-	A1C_00330	-	transposase IS200-family protein
63	 19.26	-2	51835..51969	-	44	157825188	rpsF	A1C_00335	-	30S ribosomal protein S6
64	 25.64	-1	52263..52691	+	142	157825189	-	A1C_00340	-	30S ribosomal protein S6
65	 31.60	0	52716..53003	+	95	157825190	rpsR	A1C_00345	-	30S ribosomal protein S18
66	 31.40	0	53015..53530	+	171	157825191	rplI	A1C_00350	-	50S ribosomal protein L9
67	 28.77	0	53771..55063	+	430	157825192	-	A1C_00355	-	tRNA(Ile)-lysidine synthetase TilS
68	 37.15	+1	55116..57029	+	637	157825193	-	A1C_00360	-	cell division protein ftsH
69	 28.72	0	57126..57407	+	93	157825194	-	A1C_00365	-	site-specific DNA methylase
70	 24.82	-1	57985..58125	+	46	157825195	sdhB	A1C_00370	-	succinate dehydrogenase iron-sulfur subunit
71	 26.47	-1	58505..58708	+	67	157825196	-	A1C_00375	-	hypothetical protein
72	 35.62	0	58740..59525	+	261	157825197	-	A1C_00380	-	succinate dehydrogenase iron-sulfur subunit
73	 31.46	0	59601..59813	+	70	157825198	-	A1C_00385	-	hypothetical protein
74	 31.91	0	59948..61072	-	374	157825199	-	A1C_00390	-	hypothetical protein
75	 31.28	0	61051..61830	-	259	157825200	-	A1C_00395	-	prolipoprotein diacylglyceryl transferase
76	 27.36	-1	62087..63241	+	384	157825201	-	A1C_00400	-	hypothetical protein
77	 30.30	0	63370..65052	+	560	157825202	-	A1C_00405	-	putative inner membrane protein translocase component YidC
78	 29.85	0	65052..65597	+	181	157825203	-	A1C_00410	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
79	 30.48	0	65612..66172	+	186	157825204	-	A1C_00415	-	hypothetical protein
80	 30.47	0	66476..66859	-	127	157825205	-	A1C_00420	-	hypothetical protein
81	 36.49	+1	67369..67653	+	94	157825206	-	A1C_00425	-	tellurite resistance protein-related protein
82	 33.33	0	67847..67933	+	28	157825207	-	A1C_00430	-	hypothetical protein
83	 30.69	0	68372..68674	-	100	157825208	-	A1C_00435	-	polypeptide deformylase
84	 32.26	0	69227..70723	+	498	157825209	-	A1C_00440	-	ADP,ATP carrier protein
85	 35.19	0	70807..72096	+	429	157825210	-	A1C_00445	-	sugar phosphate permease
86	 32.39	0	72124..72546	+	140	157825211	ndk	A1C_00450	-	nucleoside diphosphate kinase
87	 32.32	0	72550..74418	+	622	157825212	-	A1C_00455	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
88	 25.00	-1	74402..74977	+	191	157825213	gidB	A1C_00460	-	glucose-inhibited division protein B
89	 29.30	0	74974..75741	+	255	157825214	-	A1C_00465	-	soj protein
90	 28.69	0	75728..76588	+	286	157825215	-	A1C_00470	-	stage 0 sporulation protein J
91	 30.10	0	76776..78443	+	555	157825216	-	A1C_00475	-	putative ABC transporter ATP-binding protein
92	 21.70	-2	78446..78763	+	105	157825217	-	A1C_00480	-	hypothetical protein
93	 34.42	0	78798..79622	+	274	157825218	-	A1C_00485	-	2-dehydro-3-deoxyphosphooctonate aldolase
94	 29.23	0	80008..80202	+	64	157825219	-	A1C_00490	-	hypothetical protein
95	 33.63	0	80966..81298	-	110	157825220	-	A1C_00495	-	Iron-sulfur cluster assembly accessory protein
96	 31.89	0	81556..82731	+	391	157825221	-	A1C_00500	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
97	 33.45	0	82718..84448	+	576	157825222	argS	A1C_00505	-	arginyl-tRNA synthetase
98	 28.59	0	84595..85269	+	224	157825223	-	A1C_00510	-	hypothetical protein
99	 33.33	0	85287..85445	+	52	157825224	-	A1C_00515	-	hypothetical protein
100	 36.50	+1	85586..87799	+	737	157825225	-	A1C_00520	-	DNA topoisomerase IV subunit A
31.80	MEAN

4.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.