IslandPath Analysis: Aeromonas salmonicida subsp. salmonicida A449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 58.96   STD DEV: 5.32
Aeromonas salmonicida subsp. salmonicida A449, complete genome - 1..4702402
4086 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.82	0	201..1571	+	456	145297125	dnaA	ASA_0001	-	chromosomal replication initiator protein DnaA
2	 58.15	0	1654..2757	+	367	145297126	dnaN	ASA_0002	-	DNA polymerase III beta-subunit
3	 58.61	0	2760..3863	+	367	145297127	recF	ASA_0003	-	DNA replication and repair protein RecF
4	 58.67	0	3860..6274	+	804	145297128	gyrB	ASA_0004	-	DNA gyrase subunit B
5	 53.59	-1	6342..7106	-	254	145297129	-	ASA_0005	-	hypothetical protein
6	 61.15	0	7310..7690	-	126	145297130	-	ASA_0006	-	glyoxalase family protein
7	 60.43	0	7758..8462	-	234	145297131	-	ASA_0007	-	DeoR family transcriptional regulator
8	 54.11	0	8741..9154	+	137	145297132	ibpA	ASA_0008	-	16 kDa heat shock protein A
9	 58.90	0	9248..9685	+	145	145297133	ibpB	ASA_0009	-	16 kDa heat shock protein B
10	 51.85	-1	10881..11312	-	143	145297134	-	ASA_0011	-	putative type III secretion chaperone
11	 58.49	0	11425..12672	-	415	145297135	avtA	ASA_0012	-	valine--pyruvate transaminase
12	 58.12	0	12965..13198	+	77	145297136	-	ASA_0013	-	hypothetical protein
13	 59.06	0	15359..16042	-	227	145297137	kdpE	ASA_0016	-	two-component system potassium response regulator KdpE
14	 63.69	0	16129..18717	-	862	145297138	kdpD	ASA_0017	-	two-component system potassium sensor histidine kinase KdpD
15	 60.85	0	18844..19359	-	171	145297139	kdpC	ASA_0018	-	potassium-transporting ATPase, C chain
16	 61.86	0	19420..21477	-	685	145297140	kdpB	ASA_0019	-	potassium-transporting ATPase, B subunit
17	 61.08	0	21545..23227	-	560	145297141	kdpA	ASA_0020	-	potassium-transporting ATPase subunit A
18	 58.52	0	23541..24890	-	449	145297142	gor	ASA_0021	-	glutathione oxidoreductase
19	 55.86	0	24967..26964	-	665	145297143	-	ASA_0022	-	two-component system sensor histidine kinase
20	 58.65	0	27057..30137	-	1026	145297144	-	ASA_0023	-	multidrug resistance protein
21	 58.08	0	30153..31259	-	368	145297145	-	ASA_0024	-	membrane-fusion protein
22	 52.86	-1	31207..31887	-	226	145297146	-	ASA_0025	-	TetR family transcriptional regulator
23	 59.06	0	32763..33275	+	170	145297147	-	ASA_0030	-	hypothetical protein
24	 59.80	0	33392..34207	-	271	145297148	-	ASA_0031	-	hypothetical protein
25	 61.06	0	34295..35275	-	326	145297149	lypA	ASA_0032	-	lysophospholipase L2
26	 61.04	0	35325..36071	-	248	145297150	trmH	ASA_0033	-	tRNA guanosine-2'-O-methyltransferase
27	 59.53	0	36228..38342	-	704	145297151	spoT	ASA_0034	-	guanosine-3',5'-bis(diphosphate)3'-pyrophosphohydrolase
28	 58.33	0	38477..38752	-	91	145297152	rpoZ	ASA_0035	-	DNA-directed RNA polymerase, omega subunit
29	 57.89	0	38832..39458	-	208	145297153	gmk	ASA_0036	-	guanylate kinase
30	 62.69	0	39758..40813	-	351	145297154	-	ASA_0037	-	ADP-heptose--LPS heptosyltransferase III
31	 60.22	0	40999..41712	+	237	145297155	kdtA	ASA_0038	-	3-deoxy-D-manno-octulosonic-acid kinase
32	 64.23	0	41783..42643	+	286	145297156	-	ASA_0039	-	GGDEF domain-containing protein
33	 61.05	0	42640..43494	-	284	145297157	madN	ASA_0040	-	MadN protein
34	 59.52	0	43537..43830	+	97	145297158	-	ASA_0041	-	hypothetical protein
35	 59.88	0	43987..44148	-	53	145297159	-	ASA_0042	-	hypothetical protein
36	 60.54	0	44133..45062	-	309	145297160	-	ASA_0043	-	integral membrane protein
37	 65.85	+1	45124..46098	+	324	145297161	-	ASA_0044	-	LysR family transcriptional regulator
38	 61.93	0	46077..47090	-	337	145297162	trpS	ASA_0045	-	tryptophanyl-tRNA synthetase II
39	 54.94	0	47282..47716	-	144	145297163	uspA	ASA_0046	-	universal stress protein A
40	 63.61	0	47974..49281	+	435	145297164	-	ASA_0047	-	trans-2-enoyl-CoA reductase
41	 56.57	0	51239..51763	+	174	145297165	ftn	ASA_0049	-	nonheme iron-containing ferritin
42	 62.36	0	51965..53149	+	394	145297166	-	ASA_0050	-	flavoprotein
43	 60.09	0	53258..53896	+	212	145297167	-	ASA_0051	-	leucine export protein LeuE
44	 55.02	0	53998..54624	+	208	145297168	-	ASA_0052	-	hypothetical protein
45	 47.71	-2	54677..55309	-	210	145297169	-	ASA_0053	-	hypothetical protein
46	 56.87	0	58309..59319	-	336	145297170	-	ASA_0056	-	hypothetical protein
47	 50.00	-1	59862..60311	+	149	145297171	-	ASA_0058	-	transposase
48	 51.61	-1	60482..61351	+	289	145297172	-	ASA_0059	-	transposase
49	 59.34	0	61526..63067	+	513	145297173	-	ASA_0060	-	transposase subunit 1
50	 58.07	0	63082..63837	+	251	145297174	-	ASA_0061	-	transposase subunit 2
51	 55.79	0	64321..64881	-	186	145297175	matB	ASA_0062	-	MatB protein
52	 39.10	-2	65453..66076	+	207	145297176	bvgA	ASA_0063	-	two-component system response regulator
53	 55.44	0	69154..69447	+	97	145297177	-	ASA_0065	-	IS3 family transposase
54	 54.32	0	69576..70304	+	242	145297178	-	ASA_0066	-	IS3 family transposase
55	 51.82	-1	70928..71338	-	136	145297179	-	ASA_0067	-	hypothetical protein
56	 60.31	0	71429..73144	+	571	145297180	-	ASA_0068	-	two-component system sensor histidine kinase
57	 56.97	0	73138..73869	+	243	145297181	-	ASA_0069	-	two-component system response regulator
58	 61.40	0	73979..75175	+	398	145297182	-	ASA_0070	-	major facilitator superfamily protein
59	 66.85	+1	75255..76352	-	365	145297183	purK	ASA_0071	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
60	 69.49	+1	76376..76870	-	164	145297184	purE	ASA_0072	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
61	 63.04	0	76933..77235	-	100	145297185	-	ASA_0073	-	hypothetical protein
62	 63.32	0	77241..78167	-	308	145297186	-	ASA_0074	-	hypothetical protein
63	 63.01	0	78279..79181	+	300	145297187	-	ASA_0075	-	LysR family transcriptional regulator
64	 59.75	0	79448..81283	+	611	145297188	btuB	ASA_0076	-	vitamin B12 transporter btuB precursor
65	 59.22	0	81400..82191	+	263	145297189	murI	ASA_0077	-	glutamate racemase
66	 55.49	0	82210..82701	-	163	145297190	-	ASA_0078	-	RNA-binding protein
67	 58.80	0	88845..89708	+	287	145297191	-	ASA_0084	-	HesA/MoeB/ThiF family protein
68	 60.00	0	89730..90164	-	144	145297192	sufE	ASA_0085	-	cysteine desulfuration protein SufE
69	 62.41	0	90178..91398	-	406	145297193	sufS	ASA_0086	-	cysteine desulphurase
70	 59.17	0	91565..93577	+	670	145297194	rep	ASA_0087	-	ATP-dependent DNA helicase Rep
71	 56.36	0	95957..96412	-	151	145297195	-	ASA_0089	-	cytochrome c5
72	 59.09	0	96610..97638	-	342	145297196	tdh	ASA_0090	-	L-threonine 3-dehydrogenase
73	 60.02	0	97707..98804	-	365	145297197	kbl	ASA_0091	-	2-amino-3-ketobutyrate coenzyme A ligase
74	 55.50	0	98858..99502	-	214	145297198	-	ASA_0092	-	TetR family transcriptional regulator
75	 56.35	0	99649..100608	+	319	145297199	hldD	ASA_0093	-	ADP-L-glycero-D-manno-heptose-6-epimerase
76	 42.07	-2	100694..101815	+	373	145297200	-	ASA_0094	-	glycosyl transferase family protein
77	 56.27	0	101906..103666	+	586	145297201	wavL	ASA_0095	-	polysaccharide deacetylase
78	 46.04	-2	103673..104884	+	403	145297202	waaL	ASA_0096	-	O-antigen ligase
79	 44.30	-2	104881..105564	+	227	145297203	lbgA	ASA_0097	-	LPS biosynthesis glycosyltransferase
80	 41.50	-2	105561..106613	+	350	145297204	lbgB	ASA_0098	-	lipooligosaccharided-glycero-D-manno-heptosyltransferase
81	 55.77	0	106588..107652	-	354	145297205	-	ASA_0099	-	ADP-heptose:LPS heptosyltransferase II
82	 59.84	0	107820..108683	-	287	145297206	-	ASA_0100	-	hypothetical protein
83	 61.27	0	108974..109696	+	240	145297207	rph	ASA_0101	-	ribonuclease PH
84	 60.40	0	109766..110419	+	217	145297208	pyrE	ASA_0102	-	orotate phosphoribosyltransferase
85	 65.27	+1	110609..113038	+	809	145297209	-	ASA_0103	-	copper-translocating P-type ATPase
86	 59.23	0	113039..113428	+	129	145297210	cueR	ASA_0104	-	Cu(I)-responsive transcriptional regulator
87	 61.67	0	113507..114667	+	386	145297211	-	ASA_0105	-	GGDEF domain-containing protein
88	 56.82	0	114698..114961	+	87	145297212	-	ASA_0106	-	hypothetical protein
89	 59.02	0	115158..116609	+	483	145297213	-	ASA_0107	-	FixG-related protein
90	 60.61	0	116694..117683	+	329	145297214	-	ASA_0108	-	serine/threonine protein kinase
91	 55.83	0	118061..118669	+	202	145297215	dsbA	ASA_0109	-	thiol-disulfide interchange protein
92	 68.16	+1	118774..120309	-	511	145297216	phnE	ASA_0110	-	ABC-type phosphate/phosphonate transporter, permease component
93	 70.87	+2	120309..121070	-	253	145297217	phnC	ASA_0111	-	ABC-type phosphate/phosphonate transporter, ATP- binding protein
94	 63.95	0	121067..121912	-	281	145297218	phnD	ASA_0112	-	ABC-type phosphate/phosphonate transporter, periplasmic binding protein
95	 62.09	0	122037..123215	-	392	145297219	pncB	ASA_0113	-	nicotinate phosphoribosyltransferase
96	 63.52	0	123305..123940	-	211	145297220	pncA	ASA_0114	-	pyrazinamidase/nicotinamidase
97	 62.52	0	124015..124665	+	216	145297221	-	ASA_0115	-	MutT/nudix family protein
98	 65.26	+1	124662..125159	+	165	145297222	-	ASA_0116	-	hypothetical protein
99	 53.67	0	125318..126217	-	299	145297223	-	ASA_0117	-	phospholipid/glycerol acyltransferase
100	 64.03	0	126354..127868	-	504	145297224	comM	ASA_0118	-	ComM-related protein
58.96	MEAN

5.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.