IslandPath Analysis: Methylacidiphilum infernorum V4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.35   STD DEV: 5.40
Methylacidiphilum infernorum V4, complete genome - 1..2287145
2472 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.63	0	251..1615	+	454	189218018	dnaA	Minf_0001	-	Chromosomal replication initiator protein dnaA, ATPase
2	 40.68	0	1822..2937	+	371	189218019	dnaN	Minf_0002	-	DNA polymerase sliding clamp subunit
3	 39.28	0	2950..3336	+	128	189218020	-	Minf_0003	-	hypothetical protein
4	 38.19	-1	3344..3487	-	47	189218021	-	Minf_0004	-	hypothetical protein
5	 34.25	-1	3469..3906	+	145	189218022	lspA	Minf_0005	-	Lipoprotein signal peptidase
6	 41.30	0	3909..4850	+	313	189218023	nadA	Minf_0006	-	Quinolinate synthase
7	 42.53	0	4886..5494	+	202	189218024	-	Minf_0007	-	Predicted DNA-binding protein containing PIN domain
8	 39.96	0	5456..6556	-	366	189218025	-	Minf_0008	-	ATP-dependent DNA ligase
9	 28.03	-2	6726..6857	+	43	189218026	-	Minf_0009	-	hypothetical protein
10	 41.55	0	6854..8143	+	429	189218027	ugd	Minf_0010	-	UDP-glucose 6-dehydrogenase
11	 44.84	0	8155..9423	+	422	189218028	purA	Minf_0011	-	Adenylosuccinate synthase
12	 27.04	-2	9455..9613	+	52	189218029	-	Minf_0012	-	hypothetical protein
13	 40.10	0	9606..10388	+	260	189218030	uppS	Minf_0013	-	Undecaprenyl pyrophosphate synthase
14	 41.41	0	10440..11330	+	296	189218031	cdsA	Minf_0014	-	Phosphatidate cytidylyltransferase
15	 41.36	0	11358..12005	+	215	189218032	psd	Minf_0015	-	Phosphatidylserine decarboxylase
16	 38.83	-1	11996..12886	+	296	189218033	pssA	Minf_0016	-	Phosphatidylserine synthase
17	 44.89	0	13146..14339	+	397	189218034	kamA	Minf_0017	-	Lysine 2,3-aminomutase
18	 42.25	0	14360..15559	+	399	189218035	-	Minf_0018	-	SAM-dependent methyltransferase
19	 43.81	0	15562..15666	-	34	189218036	-	Minf_0019	-	hypothetical protein
20	 44.76	0	15773..18223	+	816	189218037	ppsA	Minf_0020	-	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
21	 45.54	0	18242..20968	+	908	189218038	-	Minf_0021	-	Acyl-CoA synthetase (ADP forming) alpha and beta chain
22	 42.15	0	21169..22098	+	309	189218039	spo0J	Minf_0022	-	Chromosome (plasmid) partitioning protein, ParB/Spo0J family
23	 42.83	0	22043..22663	-	206	189218040	-	Minf_0023	-	SCP/PR1 family protein
24	 44.63	0	22732..24519	+	595	189218041	mutL	Minf_0024	-	DNA mismatch repair enzyme MutL
25	 44.90	0	24527..25633	-	368	189218042	-	Minf_0025	-	Predicted GTPase, probable translation factor
26	 40.32	0	25751..26308	+	185	189218043	nusG	Minf_0026	-	Transcriptional activator RfaH, NusG family
27	 55.76	+2	26363..26527	-	54	189218044	-	Minf_0027	-	hypothetical protein
28	 43.65	0	26613..27494	+	293	189218045	rfbD	Minf_0028	-	dTDP-4-dehydrorhamnose reductase
29	 37.78	-1	27485..27619	+	44	189218046	-	Minf_0029	-	hypothetical protein
30	 45.15	0	27591..28775	+	394	189218047	wecE	Minf_0030	-	Predicted pyridoxal phosphate-dependent enzyme involved in regulation of cell wall biogenesis
31	 43.92	0	28861..31362	+	833	189218048	imp	Minf_0031	-	Organic solvent tolerance protein OstA
32	 45.41	0	31328..31915	-	195	189218049	-	Minf_0032	-	hypothetical protein
33	 45.96	0	31919..32512	-	197	189218050	kdpC	Minf_0033	-	K+-transporting ATPase, chain C
34	 47.56	0	32522..34567	-	681	189218051	kdpB	Minf_0034	-	K+ transporting ATPase, chain B
35	 46.55	0	34571..36295	-	574	189218052	kdpA	Minf_0035	-	K+-transporting ATPase, chain A
36	 44.08	0	36581..38488	-	635	189218053	priA	Minf_0036	-	Primosomal protein N', superfamily II helicase
37	 40.95	0	38700..38909	-	69	189218054	-	Minf_0037	-	hypothetical protein
38	 26.53	-2	38882..39028	-	48	189218055	-	Minf_0038	-	hypothetical protein
39	 46.33	0	39029..39205	+	58	189218056	-	Minf_0039	-	Protein of unknown function, DUF1458
40	 45.56	0	39251..39757	-	168	189218057	cumB	Minf_0040	-	Cytosine/adenosine deaminase
41	 44.30	0	40039..40713	+	224	189218058	-	Minf_0041	-	Nitric-oxide reductase subunit C
42	 45.89	0	40718..42142	+	474	189218059	norB	Minf_0042	-	Nitric-oxide reductase subunit B
43	 39.05	0	42133..42447	+	104	189218060	-	Minf_0043	-	hypothetical protein
44	 40.39	0	42470..42724	-	84	189218061	-	Minf_0044	-	hypothetical protein
45	 52.07	+1	42784..43146	+	120	189218062	-	Minf_0045	-	hypothetical protein
46	 46.49	0	43210..43323	+	37	189218063	-	Minf_0046	-	hypothetical protein
47	 38.91	-1	43345..44169	-	274	189218064	ubiE	Minf_0047	-	Methylase involved in ubiquinone/menaquinone biosynthesis
48	 41.86	0	44245..44877	-	210	189218065	sodA	Minf_0048	-	Superoxide dismutase
49	 42.74	0	44963..46642	-	559	189218066	recN	Minf_0049	-	DNA repair protein ATPase, RecN
50	 44.48	0	46676..47689	-	337	189218067	prfB	Minf_0050	-	Protein chain release factor B
51	 42.74	0	47890..48495	-	201	189218068	-	Minf_0051	-	hypothetical protein
52	 45.15	0	48691..49164	+	157	189218069	moaC	Minf_0052	-	Molybdenum cofactor biosynthesis enzyme
53	 48.61	0	49161..49664	+	167	189218070	moaB	Minf_0053	-	Molybdopterin biosynthesis enzyme
54	 36.11	-1	49641..49748	-	35	189218071	-	Minf_0054	-	hypothetical protein
55	 42.36	0	49771..49914	+	47	189218072	-	Minf_0055	-	hypothetical protein
56	 41.61	0	51111..51557	+	148	189218073	hisI	Minf_0056	-	Phosphoribosyl-AMP cyclohydrolase
57	 46.26	0	51575..52657	-	360	189218074	-	Minf_0057	-	Acyl-CoA reductase, LuxC
58	 42.92	0	52691..53764	-	357	189218075	-	Minf_0058	-	Acyl-protein synthetase, LuxE
59	 38.68	-1	53842..54084	+	80	189218076	-	Minf_0059	-	Membrane protein CcmA involved in cell shape determination
60	 42.38	0	54084..54857	+	257	189218077	-	Minf_0060	-	Zn-finger protein
61	 37.91	-1	54919..55071	+	50	189475224	-	Minf_0061	-	hypothetical protein
62	 45.32	0	55148..56056	-	302	189218079	phuW	Minf_0062	-	Uncharacterized iron-regulated protein
63	 44.54	0	56063..56758	-	231	189218080	-	Minf_0063	-	Phosphatase/phosphohexomutase HAD superfamily
64	 41.57	0	56799..58037	+	412	189218081	-	Minf_0064	-	Predicted aspartyl protease
65	 45.94	0	58279..59079	+	266	189218082	-	Minf_0065	-	GTP cyclohydrolase I
66	 44.19	0	59309..61252	+	647	189218083	thiC	Minf_0066	-	Thiamine biosynthesis protein ThiC
67	 44.08	0	61355..64117	+	920	189218084	sucA	Minf_0067	-	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, or related enzyme
68	 44.88	0	64161..65390	+	409	189218085	aceF	Minf_0068	-	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component
69	 45.61	0	65419..66819	+	466	189218086	lpd	Minf_0069	-	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component
70	 44.59	0	66810..67973	-	387	189218087	alr	Minf_0070	-	Alanine racemase
71	 45.31	0	67975..68550	-	191	189218088	-	Minf_0071	-	Glycoprotease family enzyme
72	 40.38	0	68602..69027	-	141	189218089	-	Minf_0072	-	ATP/GTP binding protein
73	 44.90	0	68990..69949	-	319	189218090	thiL	Minf_0073	-	Thiamine monophosphate kinase
74	 45.51	0	69979..70758	-	259	189218091	-	Minf_0074	-	Predicted metal-dependent membrane protease
75	 43.57	0	70916..71911	-	331	189218092	sppA	Minf_0075	-	Periplasmic serine protease, ClpP class
76	 43.22	0	71981..73315	-	444	189218093	metG	Minf_0076	-	Methionyl-tRNA synthetase
77	 38.64	-1	73442..73573	+	43	189218094	-	Minf_0077	-	hypothetical protein
78	 20.43	-2	73541..73633	-	30	189218095	-	Minf_0078	-	hypothetical protein
79	 42.42	0	73695..74024	+	109	189218096	himA	Minf_0079	-	Bacterial nucleoid DNA-binding protein
80	 42.28	0	74077..75294	+	405	189218097	hisS	Minf_0080	-	Histidyl-tRNA synthetase
81	 44.20	0	75431..77233	+	600	189218098	aspS	Minf_0081	-	Aspartyl-tRNA synthetase
82	 44.09	0	77270..78691	+	473	189218099	pykF	Minf_0082	-	Pyruvate kinase
83	 43.24	0	78709..79566	+	285	189218100	dltE	Minf_0083	-	Short-chain dehydrogenase
84	 46.05	0	79637..80383	+	248	189218101	-	Minf_0084	-	alpha/beta superfamily hydrolase
85	 41.23	0	80353..80466	+	37	189218102	-	Minf_0085	-	hypothetical protein
86	 43.51	0	80873..81442	+	189	189218103	dcd	Minf_0086	-	Deoxycytidine deaminase
87	 44.87	0	81660..82604	+	314	189218104	-	Minf_0087	-	Radical SAM family enzyme
88	 42.90	0	82830..83174	-	114	189218105	-	Minf_0088	-	hypothetical protein
89	 53.46	+1	83207..84910	-	567	189218106	-	Minf_0089	-	hypothetical protein
90	 47.44	0	84984..86429	+	481	189218107	nfeD	Minf_0090	-	Membrane-bound serine protease, NfeD family
91	 43.10	0	86448..86918	+	156	189218108	nfeD	Minf_0091	-	Membrane-bound serine protease, NfeD family
92	 49.16	0	86962..87978	+	338	189218109	-	Minf_0092	-	hypothetical protein
93	 43.75	0	87941..88468	+	175	189218110	-	Minf_0093	-	hypothetical protein
94	 47.59	0	88525..89934	+	469	189218111	-	Minf_0094	-	Copper/silver efflux system membrane fusion protein
95	 47.42	0	89938..93168	+	1076	189218112	-	Minf_0095	-	Putative silver efflux pump
96	 44.69	0	93301..93714	-	137	189218113	-	Minf_0096	-	hypothetical protein
97	 31.90	-2	93711..93920	-	69	189218114	-	Minf_0097	-	hypothetical protein
98	 39.82	0	94021..94914	-	297	189218115	rbn	Minf_0098	-	Ribonuclease BN family enzyme
99	 43.99	0	95030..95686	+	218	189218116	mltE	Minf_0099	-	Soluble lytic murein transglycosylase
100	 43.03	0	96300..97196	+	298	189218117	erfK	Minf_0100	-	Uncharacterized protein, ErfK family
44.35	MEAN

5.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.