IslandPath Analysis: Listeria innocua Clip11262



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.44   STD DEV: 3.31
Listeria innocua Clip11262, complete genome - 1..3011208
2968 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.54	0	319..1674	+	451	16799080	dnaA	lin0001	-	chromosomal replication initiation protein
2	 34.90	0	1868..3013	+	381	16799081	dnaN	lin0002	-	DNA polymerase III subunit beta
3	 39.36	0	3122..4465	+	447	16799082	-	lin0003	-	hypothetical protein
4	 38.81	0	4645..4863	+	72	16799083	-	lin0004	-	hypothetical protein
5	 39.08	0	4870..5982	+	370	16799084	recF	lin0005	-	recombination protein F
6	 39.72	0	6031..7971	+	646	16799085	gyrB	lin0006	-	DNA gyrase subunit B
7	 40.09	0	8066..10594	+	842	16799086	gyrA	lin0007	-	DNA gyrase subunit A
8	 38.02	0	10729..12243	+	504	16799087	-	lin0008	-	hypothetical protein
9	 34.49	0	12259..12777	+	172	16799088	-	lin0009	-	hypothetical protein
10	 38.18	0	12919..13887	+	322	16799089	-	lin0010	-	hypothetical protein
11	 40.98	+1	13796..14815	+	339	16799090	-	lin0011	-	hypothetical protein
12	 39.15	0	14793..15875	+	360	16799091	-	lin0012	-	hypothetical protein
13	 37.67	0	16219..17325	+	368	16799092	qoxA	lin0013	-	AA3-600 quinol oxidase subunit II
14	 40.51	0	17343..19322	+	659	16799093	qoxB	lin0014	-	AA3-600 quinol oxidase subunit I
15	 38.24	0	19310..19921	+	203	16799094	qoxC	lin0015	-	AA3-600 quinol oxidase subunit III
16	 37.24	0	19923..20255	+	110	16799095	-	lin0016	-	hypothetical protein
17	 40.17	0	20424..21857	+	477	16799096	-	lin0017	-	beta-glucosidase
18	 38.56	0	21904..22725	-	273	16799097	-	lin0018	-	hypothetical protein
19	 31.85	-1	22966..23706	+	246	16799098	-	lin0019	-	hypothetical protein
20	 42.04	+1	23722..24123	+	133	16799099	-	lin0020	-	hypothetical protein
21	 38.45	0	24123..24611	+	162	16799100	-	lin0021	-	hypothetical protein
22	 42.79	+1	24634..25437	+	267	16799101	-	lin0022	-	hypothetical protein
23	 38.77	0	25412..26239	+	275	16799102	-	lin0023	-	hypothetical protein
24	 42.27	+1	26267..26971	+	234	16799103	-	lin0024	-	hypothetical protein
25	 40.19	0	27026..27667	+	213	16799104	-	lin0025	-	hypothetical protein
26	 38.43	0	27872..29773	+	633	16799105	-	lin0026	-	hypothetical protein
27	 36.07	0	29855..30730	+	291	16799106	-	lin0027	-	hypothetical protein
28	 39.23	0	30963..31301	+	112	16799107	-	lin0028	-	hypothetical protein
29	 35.43	0	31338..32147	-	269	16799108	-	lin0029	-	hypothetical protein
30	 36.84	0	32164..33219	-	351	16799109	-	lin0030	-	LacI family transcription regulator
31	 42.34	+1	33421..34386	+	321	16799110	-	lin0031	-	hypothetical protein
32	 40.53	0	34383..36785	+	800	16799111	-	lin0032	-	hypothetical protein
33	 38.78	0	36798..38156	+	452	16799112	-	lin0033	-	hypothetical protein
34	 38.12	0	38157..39242	+	361	16799113	-	lin0034	-	hypothetical protein
35	 35.76	0	39445..40104	+	219	16799114	-	lin0035	-	hypothetical protein
36	 38.22	0	40183..41409	+	408	16799115	-	lin0036	-	arginine deiminase
37	 36.73	0	41689..41982	+	97	16799116	rpsF	lin0037	-	30S ribosomal protein S6
38	 41.48	+1	42038..42577	+	179	16799117	-	lin0038	-	hypothetical protein
39	 39.17	0	42621..42860	+	79	16799118	rpsR	lin0039	-	30S ribosomal protein S18
40	 31.70	-1	43016..43627	+	203	16799119	-	lin0040	-	hypothetical protein
41	 34.15	0	43883..44497	+	204	16799120	-	lin0041	-	putative accessory gene regulator protein
42	 29.01	-2	44481..44642	+	53	16799121	-	lin0042	-	hypothetical protein
43	 32.95	-1	44738..46033	+	431	16799122	-	lin0043	-	hypothetical protein
44	 34.71	0	46052..46780	+	242	16799123	-	lin0044	-	hypothetical protein
45	 40.02	0	46947..48920	+	657	16799124	-	lin0045	-	hypothetical protein
46	 35.35	0	48923..49369	+	148	16799125	rplI	lin0046	-	50S ribosomal protein L9
47	 41.98	+1	49394..50746	+	450	16799126	-	lin0047	-	replicative DNA helicase
48	 39.91	0	51005..52297	+	430	16799127	-	lin0048	-	adenylosuccinate synthetase
49	 38.44	0	52623..52916	+	97	16799128	-	lin0049	-	hypothetical protein
50	 36.14	0	53065..56268	+	1067	16799129	-	lin0050	-	hypothetical protein
51	 36.45	0	56258..56770	+	170	16799130	-	lin0051	-	hypothetical protein
52	 29.76	-2	56788..57039	+	83	16799131	-	lin0052	-	hypothetical protein
53	 34.59	0	57061..58257	+	398	16799132	-	lin0053	-	hypothetical protein
54	 39.78	0	58271..62767	+	1498	16799133	-	lin0054	-	hypothetical protein
55	 34.34	0	62787..63182	+	131	16799134	-	lin0055	-	hypothetical protein
56	 34.67	0	63175..63474	+	99	16799135	-	lin0056	-	hypothetical protein
57	 34.76	0	63471..64172	+	233	16799136	-	lin0057	-	hypothetical protein
58	 37.84	0	64173..64505	+	110	16799137	-	lin0058	-	hypothetical protein
59	 43.19	+1	64519..66252	+	577	16799138	-	lin0059	-	hypothetical protein
60	 28.46	-2	66267..66881	+	204	16799139	-	lin0060	-	hypothetical protein
61	 29.63	-2	67522..67845	+	107	16799140	-	lin0061	-	hypothetical protein
62	 29.23	-2	68014..68646	+	210	16799141	-	lin0062	-	hypothetical protein
63	 23.08	-2	70428..70817	+	129	16799142	-	lin0064	-	hypothetical protein
64	 24.33	-2	70955..71365	+	136	16799143	-	lin0065	-	hypothetical protein
65	 31.48	-1	71623..71946	+	107	16799144	-	lin0066	-	hypothetical protein
66	 45.35	+2	72374..73147	+	257	16799145	-	lin0067	-	hypothetical protein
67	 41.50	+1	73144..74196	+	350	16799146	-	lin0068	-	hypothetical protein
68	 37.56	0	74218..74856	-	212	16799147	-	lin0069	-	hypothetical protein
69	 41.80	+1	74988..75944	+	318	16799148	-	lin0070	-	hypothetical protein
70	 37.57	0	76209..77411	-	400	16799149	-	lin0071	-	hypothetical protein
71	 32.72	-1	77476..78126	-	216	16799150	-	lin0072	-	hypothetical protein
72	 34.80	0	78505..78981	-	158	16799151	-	lin0073	-	hypothetical protein
73	 36.70	0	79378..79644	+	88	16799152	-	lin0074	-	hypothetical protein
74	 36.80	0	79573..79803	-	76	16799153	-	lin0075	-	hypothetical protein
75	 29.74	-2	79869..80063	+	64	16799154	-	lin0076	-	hypothetical protein
76	 35.02	0	80075..80311	+	78	16799155	-	lin0077	-	identical to gp40
77	 29.43	-2	80308..80589	+	93	16799156	-	lin0078	-	hypothetical protein
78	 31.28	-1	80775..81017	-	80	16799157	-	lin0079	-	hypothetical protein
79	 36.82	0	81081..81854	+	257	16799158	-	lin0080	-	hypothetical protein
80	 37.90	0	81973..82497	+	174	16799159	-	lin0081	-	hypothetical protein
81	 40.86	+1	82504..82689	+	61	16799160	-	lin0082	-	hypothetical protein
82	 40.21	0	82705..82893	+	62	16799161	-	lin0083	-	hypothetical protein
83	 37.71	0	83126..84085	+	319	16799162	-	lin0084	-	hypothetical protein
84	 38.60	0	84085..84900	+	271	16799163	-	lin0085	-	putative recombinase
85	 38.16	0	84921..85832	+	303	16799164	-	lin0086	-	hypothetical protein
86	 40.48	0	85829..85996	+	55	16799165	-	lin0087	-	hypothetical protein
87	 37.39	0	86290..87102	+	270	16799166	-	lin0088	-	hypothetical protein
88	 37.14	0	87099..87728	+	209	16799167	-	lin0089	-	hypothetical protein
89	 37.16	0	87725..88246	+	173	16799168	-	lin0090	-	hypothetical protein
90	 37.66	0	88373..88765	+	130	16799169	-	lin0091	-	hypothetical protein
91	 33.87	-1	88762..88947	+	61	16799170	-	lin0092	-	hypothetical protein
92	 34.36	0	88944..89234	+	96	16799171	-	lin0093	-	hypothetical protein
93	 39.61	0	89231..89437	+	68	16799172	-	lin0094	-	hypothetical protein
94	 32.84	-1	89438..89839	+	133	16799173	-	lin0095	-	hypothetical protein
95	 31.74	-1	89836..90336	+	166	16799174	-	lin0096	-	hypothetical protein
96	 41.25	+1	90333..90812	+	159	16799175	-	lin0097	-	hypothetical protein
97	 39.89	0	90831..91013	+	60	16799176	-	lin0098	-	hypothetical protein
98	 36.79	0	90958..91362	+	134	16799177	-	lin0099	-	hypothetical protein
99	 34.90	0	91366..91749	+	127	16799178	-	lin0100	-	hypothetical protein
100	 35.40	0	91890..92324	+	144	16799179	-	lin0101	-	protein gp66
37.44	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.