IslandPath Analysis: Clostridium thermocellum ATCC 27405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.72   STD DEV: 4.22
Clostridium thermocellum ATCC 27405, complete genome - 1..3843301
3189 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 46.48	+1	104..1723	+	539	125972526	-	Cthe_0001	-	recombinase
2	 35.83	0	1883..2602	+	239	125972527	-	Cthe_0002	-	hypothetical protein
3	 36.34	0	2599..3528	+	309	125972528	-	Cthe_0003	-	ankyrin repeat-containing protein
4	 39.05	0	3874..9702	+	1942	125972529	-	Cthe_0004	-	YD repeat-containing protein
5	 33.10	-1	9715..10572	+	285	125972530	-	Cthe_0005	-	hypothetical protein
6	 29.52	-2	10818..11210	+	130	125972531	-	Cthe_0006	-	hypothetical protein
7	 31.27	-2	11461..11994	+	177	125972532	-	Cthe_0007	-	hypothetical protein
8	 34.65	-1	12187..12489	+	100	125972533	-	Cthe_0008	-	hypothetical protein
9	 39.00	0	12555..18077	+	1840	125972534	-	Cthe_0009	-	YD repeat-containing protein
10	 30.69	-2	18109..18486	+	125	125972535	-	Cthe_0010	-	hypothetical protein
11	 40.58	0	18824..19099	+	91	125972536	-	Cthe_0011	-	hypothetical protein
12	 32.81	-1	19302..19493	+	63	125972537	-	Cthe_0012	-	YD repeat-containing protein
13	 31.37	-1	19560..19916	+	118	125972538	-	Cthe_0013	-	hypothetical protein
14	 31.31	-1	20125..20421	+	98	125972539	-	Cthe_0014	-	hypothetical protein
15	 41.81	0	20533..22656	+	707	125972540	-	Cthe_0015	-	alpha-L-arabinofuranosidase B
16	 39.58	0	23020..23499	+	159	125972541	-	Cthe_0016	-	Ferritin and Dps
17	 41.44	0	24056..25918	+	620	125972542	-	Cthe_0017	-	hypothetical protein
18	 34.92	-1	25946..26260	+	104	125972543	-	Cthe_0018	-	hypothetical protein
19	 42.20	0	26276..26602	+	108	125972544	-	Cthe_0019	-	P-II family regulatory protein
20	 42.68	0	26797..27759	+	320	125972545	-	Cthe_0020	-	biotin synthase
21	 41.77	0	27756..28490	+	244	125972546	-	Cthe_0021	-	dethiobiotin synthase
22	 44.47	+1	28483..29649	+	388	125972547	-	Cthe_0022	-	2-amino-3-ketobutyrate coenzyme A ligase
23	 41.83	0	29649..30425	+	258	125972548	-	Cthe_0023	-	pimeloyl-CoA synthesis (biotin biosynthesis)
24	 39.44	0	30415..31266	+	283	125972549	-	Cthe_0024	-	biotin biosynthesis protein BioC
25	 43.45	0	31259..32632	+	457	125972550	-	Cthe_0025	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
26	 34.14	-1	34060..34431	+	123	125972551	-	Cthe_0027	-	hypothetical protein
27	 37.09	0	34615..35625	-	336	125972552	-	Cthe_0028	-	uncharacterized protein, YcgL-like protein
28	 40.53	0	36062..36700	+	212	125972553	-	Cthe_0029	-	hypothetical protein
29	 44.30	+1	36870..37580	+	236	125972554	-	Cthe_0030	-	phosphatidate cytidylyltransferase
30	 45.67	+1	37585..38208	+	207	125972555	-	Cthe_0031	-	putative membrane transporter
31	 41.12	0	38313..40085	-	590	125972556	-	Cthe_0032	-	glycoside hydrolase family protein
32	 43.42	0	40454..43120	+	888	125972557	-	Cthe_0033	-	small GTP-binding protein
33	 39.24	0	43237..43896	-	219	125972558	-	Cthe_0034	-	cyclic nucleotide-binding protein
34	 45.11	+1	44011..44715	+	234	125972559	-	Cthe_0035	-	4Fe-4S ferredoxin, iron-sulfur binding
35	 44.44	+1	44775..46403	+	542	125972560	-	Cthe_0036	-	hydroxylamine reductase
36	 35.90	0	46505..46933	-	142	125972561	-	Cthe_0037	-	heat shock protein Hsp20
37	 43.80	0	47035..47292	+	85	125972562	-	Cthe_0038	-	chemotaxis protein cheW
38	 41.24	0	47345..49216	+	623	125972563	-	Cthe_0039	-	methyl-accepting chemotaxis sensory transducer
39	 44.03	+1	49460..52123	+	887	125972564	-	Cthe_0040	-	cellulose 1,4-beta-cellobiosidase
40	 38.39	0	52125..52559	-	144	125972565	-	Cthe_0041	-	hypothetical protein
41	 41.90	0	52784..53986	+	400	125972566	-	Cthe_0042	-	small GTP-binding protein
42	 46.66	+1	54373..56601	+	742	125972567	-	Cthe_0043	-	glycoside hydrolase family protein
43	 43.88	0	56725..58326	-	533	125972568	-	Cthe_0044	-	cellulosome enzyme, dockerin type I
44	 39.01	0	58680..59489	+	269	125972569	-	Cthe_0045	-	copper amine oxidase-like protein
45	 34.70	-1	59535..62237	+	900	125972570	-	Cthe_0046	-	hypothetical protein
46	 38.52	0	62485..63294	+	269	125972571	-	Cthe_0047	-	copper amine oxidase-like protein
47	 38.77	0	63314..64123	+	269	125972572	-	Cthe_0048	-	copper amine oxidase-like protein
48	 38.76	0	64209..64871	+	220	125972573	-	Cthe_0049	-	XRE family transcriptional regulator
49	 37.08	0	65172..66131	+	319	125972574	-	Cthe_0050	-	hypothetical protein
50	 39.21	0	66312..67571	+	419	125972575	-	Cthe_0051	-	hypothetical protein
51	 43.10	0	67772..69031	+	419	125972576	-	Cthe_0052	-	hypothetical protein
52	 42.73	0	69309..71693	+	794	125972577	-	Cthe_0053	-	ribonucleotide-diphosphate reductase subunit alpha
53	 44.11	+1	71948..74137	+	729	125972578	-	Cthe_0054	-	hypothetical protein
54	 38.36	0	74379..74915	+	178	125972579	-	Cthe_0055	-	hypothetical protein
55	 43.27	0	75394..89286	+	4630	125972580	-	Cthe_0056	-	Ig-like, group 2
56	 39.65	0	89362..89994	-	210	125972581	-	Cthe_0057	-	hypothetical protein
57	 34.89	-1	90212..90982	+	256	125972582	-	Cthe_0058	-	putative RNA polymerase sigma factor SigI
58	 40.31	0	90979..92439	+	486	125972583	-	Cthe_0059	-	type 3a, cellulose-binding
59	 39.68	0	92558..93061	+	167	125972584	-	Cthe_0060	-	hypothetical protein
60	 47.18	+1	93207..93755	-	182	125972585	-	Cthe_0061	-	BioY protein
61	 37.94	0	93965..95854	-	629	125972586	-	Cthe_0062	-	sulfatase
62	 41.37	0	96121..96456	+	111	125972587	-	Cthe_0063	-	rubredoxin-type Fe(Cys)4 protein
63	 43.05	0	96477..97433	-	318	125972588	-	Cthe_0064	-	Na/Pi-cotransporter II-related protein
64	 41.89	0	97629..97967	+	112	125972589	-	Cthe_0065	-	hypothetical protein
65	 35.85	0	97964..98440	+	158	125972590	-	Cthe_0066	-	hypothetical protein
66	 48.90	+2	98498..99223	+	241	125972591	-	Cthe_0067	-	NAD-dependent deacetylase
67	 43.14	0	99295..99906	-	203	125972592	-	Cthe_0068	-	peptidylprolyl isomerase
68	 40.96	0	100097..101119	+	340	125972593	-	Cthe_0069	-	asparagine synthetase AsnA
69	 42.15	0	101256..102650	+	464	125972594	asnC	Cthe_0070	-	asparaginyl-tRNA synthetase
70	 45.76	+1	102852..105668	-	938	125972595	-	Cthe_0071	-	cellulose 1,4-beta-cellobiosidase
71	 38.07	0	105911..106396	+	161	125972596	-	Cthe_0072	-	phage shock protein C, PspC
72	 38.92	0	106393..107358	+	321	125972597	-	Cthe_0073	-	hypothetical protein
73	 40.62	0	107385..107576	+	63	125972598	-	Cthe_0074	-	ECF subfamily RNA polymerase sigma-24 factor
74	 36.16	0	107711..108454	+	247	125972599	-	Cthe_0075	-	hypothetical protein
75	 43.33	0	108653..109042	+	129	125972600	-	Cthe_0076	-	hypothetical protein
76	 35.94	0	109205..109588	+	127	125972601	-	Cthe_0077	-	hypothetical protein
77	 43.96	+1	109659..109865	-	68	125972602	-	Cthe_0078	-	hypothetical protein
78	 43.60	0	110150..110665	+	171	125972603	-	Cthe_0079	-	hypothetical protein
79	 38.89	0	110717..111148	-	143	125972604	-	Cthe_0080	-	CheW protein
80	 44.86	+1	111423..112628	-	401	125972605	-	Cthe_0081	-	N-acetylglutamate synthase / glutamate N-acetyltransferase
81	 43.59	0	113271..115718	+	815	125972606	-	Cthe_0082	-	Lon-A peptidase
82	 36.43	0	116031..117710	+	559	125972607	-	Cthe_0083	-	serine phosphatase
83	 32.78	-1	117726..118271	-	181	125972608	-	Cthe_0084	-	hypothetical protein
84	 37.76	0	118609..119241	-	210	125972609	-	Cthe_0085	-	negative regulator of genetic competence
85	 38.76	0	119622..120506	+	294	125972610	-	Cthe_0086	-	hypothetical protein
86	 42.29	0	120774..121376	+	200	125972611	-	Cthe_0087	-	maf protein
87	 45.16	+1	121454..122476	+	340	125972612	-	Cthe_0088	-	rod shape-determining protein MreB
88	 39.35	0	122493..123356	+	287	125972613	-	Cthe_0089	-	rod shape-determining protein MreC
89	 35.40	-1	123353..123883	+	176	125972614	-	Cthe_0090	-	hypothetical protein
90	 42.77	0	123997..126126	+	709	125972615	-	Cthe_0091	-	peptidoglycan glycosyltransferase
91	 43.71	0	126192..126875	+	227	125972616	minC	Cthe_0092	-	septum formation inhibitor
92	 42.82	0	127090..127890	+	266	125972617	-	Cthe_0093	-	septum site-determining protein MinD
93	 38.95	0	127904..128188	+	94	125972618	-	Cthe_0094	-	cell division topological specificity factor MinE
94	 38.38	0	128209..128604	+	131	125972619	-	Cthe_0095	-	methylglyoxal synthase
95	 37.88	0	128662..128925	-	87	125972620	-	Cthe_0096	-	hypothetical protein
96	 40.18	0	129156..130031	+	291	125972621	-	Cthe_0097	-	peptidase M23B
97	 32.96	-1	130163..130972	+	269	125972622	-	Cthe_0098	-	peptidase M50
98	 41.32	0	131036..131911	-	291	125972623	-	Cthe_0099	-	5,10-methylenetetrahydrofolate reductase
99	 36.91	0	132322..133104	+	260	125972624	-	Cthe_0100	-	hypothetical protein
100	 44.87	+1	133120..134289	+	389	125972625	-	Cthe_0101	-	iron-containing alcohol dehydrogenase
39.72	MEAN

4.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.