IslandPath Analysis: Shewanella loihica PV-4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.50   STD DEV: 4.91
Shewanella loihica PV-4, complete genome - 1..4602594
3859 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 51.67	0	111..1490	+	459	127510936	dnaA	Shew_0001	-	chromosomal replication initiation protein
2	 53.68	0	1511..2611	+	366	127510937	-	Shew_0002	-	DNA polymerase III, beta subunit
3	 48.66	-1	2684..3766	+	360	127510938	-	Shew_0003	-	DNA replication and repair protein RecF
4	 52.94	0	3783..6200	+	805	127510939	-	Shew_0004	-	DNA gyrase, B subunit
5	 50.00	0	6322..7041	+	239	127510940	-	Shew_0005	-	hypothetical protein
6	 58.30	0	7075..7803	-	242	127510941	-	Shew_0006	-	LamB/YcsF family protein
7	 62.17	+1	7793..8725	-	310	127510942	-	Shew_0007	-	urea amidolyase related protein
8	 58.37	0	8722..9408	-	228	127510943	-	Shew_0008	-	allophanate hydrolase subunit 1
9	 57.44	0	9507..11576	-	689	127510944	glyS	Shew_0009	-	glycyl-tRNA synthetase subunit beta
10	 52.98	0	11589..12494	-	301	127510945	glyQ	Shew_0010	-	glycyl-tRNA synthetase subunit alpha
11	 50.35	0	12604..13173	+	189	127510946	-	Shew_0011	-	DNA-3-methyladenine glycosylase I
12	 48.16	-1	13179..13859	-	226	127510947	-	Shew_0012	-	hypothetical protein
13	 54.34	0	14072..17275	-	1067	127510948	-	Shew_0013	-	amidohydrolase
14	 55.78	0	17578..18018	-	146	127510949	-	Shew_0014	-	hypothetical protein
15	 55.28	0	18184..18429	-	81	127510950	-	Shew_0015	-	SirA family protein
16	 55.70	0	18563..19027	-	154	127510951	-	Shew_0016	-	ybaK/ebsC protein
17	 52.76	0	19011..19499	-	162	127510952	-	Shew_0017	-	GCN5-related N-acetyltransferase
18	 57.56	0	19854..21017	-	387	127510953	fadA	Shew_0018	-	3-ketoacyl-CoA thiolase
19	 55.65	0	21039..23189	-	716	127510954	fadB	Shew_0019	-	multifunctional fatty acid oxidation complex subunit alpha
20	 56.08	0	23495..24817	+	440	127510955	-	Shew_0020	-	proline dipeptidase
21	 55.93	0	24832..25446	+	204	127510956	-	Shew_0021	-	hypothetical protein
22	 56.45	0	25599..27056	+	485	127510957	-	Shew_0022	-	TrkH family potassium uptake protein
23	 50.19	0	27056..27583	+	175	127510958	-	Shew_0023	-	protoporphyrinogen oxidase
24	 50.00	0	27605..27910	-	101	127510959	-	Shew_0024	-	ArsR family transcriptional regulator
25	 53.56	0	28183..28716	+	177	127510960	-	Shew_0025	-	protoporphyrinogen oxidase
26	 53.07	0	28832..29368	+	178	127510961	-	Shew_0026	-	hypothetical protein
27	 52.78	0	29381..30028	-	215	127510962	-	Shew_0027	-	glutathione S-transferase domain-containing protein
28	 57.78	0	30110..31009	-	299	127510963	-	Shew_0028	-	LysR family transcriptional regulator
29	 54.64	0	31239..31928	+	229	127510964	-	Shew_0029	-	3-methyladenine DNA glycosylase
30	 52.91	0	32076..32831	-	251	127510965	-	Shew_0030	-	hypothetical protein
31	 56.24	0	33256..34416	+	386	127510966	-	Shew_0031	-	RND family efflux transporter MFP subunit
32	 57.24	0	34426..37575	+	1049	127510967	-	Shew_0032	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
33	 58.79	0	37798..39639	+	613	127510968	-	Shew_0033	-	peptidase M14, carboxypeptidase A
34	 56.34	0	39701..40504	-	267	127510969	-	Shew_0034	-	methyltransferase type 12
35	 54.99	0	40708..41478	+	256	127510970	-	Shew_0035	-	putative lipoprotein
36	 59.37	0	41568..42389	-	273	127510971	-	Shew_0036	-	phosphoesterase, PA-phosphatase related
37	 55.56	0	42482..43300	-	272	127510972	-	Shew_0037	-	phosphoesterase, PA-phosphatase related
38	 55.78	0	43463..43756	-	97	127510973	-	Shew_0038	-	excinuclease ABC subunit C
39	 58.08	0	43758..45818	-	686	127510974	-	Shew_0039	-	oligopeptidase B
40	 58.26	0	46327..46980	+	217	127510975	-	Shew_0040	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
41	 57.53	0	47293..50577	+	1094	127510976	-	Shew_0041	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
42	 52.38	0	50756..51280	-	174	127510977	-	Shew_0042	-	Ferritin, Dps family protein
43	 46.03	-1	51408..51596	+	62	127510978	-	Shew_0043	-	hypothetical protein
44	 59.53	+1	51810..54920	+	1036	127510979	-	Shew_0044	-	acriflavin resistance protein
45	 60.78	+1	54917..55987	+	356	127510980	-	Shew_0045	-	RND family efflux transporter MFP subunit
46	 59.46	+1	56169..57416	+	415	127510981	-	Shew_0046	-	molybdenum cofactor synthesis domain-containing protein
47	 57.81	0	57427..58194	+	255	127510982	-	Shew_0047	-	molybdopterin biosynthesis protein MoeB
48	 57.91	0	58313..59020	-	235	127510983	-	Shew_0048	-	short chain dehydrogenase
49	 57.82	0	59401..60972	+	523	127510984	-	Shew_0049	-	choline/carnitine/betaine transporter
50	 59.58	+1	61076..61795	-	239	127510985	-	Shew_0050	-	DNA polymerase III subunit epsilon
51	 58.62	0	61803..63692	-	629	127510986	-	Shew_0051	-	cyclic nucleotide-binding protein
52	 59.38	0	63788..64693	-	301	127510987	-	Shew_0052	-	DNA binding domain-containing protein
53	 58.27	0	64717..65562	-	281	127510988	-	Shew_0053	-	formate dehydrogenase, subunit FdhD
54	 56.48	0	65858..66328	+	156	127510989	-	Shew_0054	-	hypothetical protein
55	 59.73	+1	66328..66918	+	196	127510990	-	Shew_0055	-	hypothetical protein
56	 57.84	0	67100..68776	+	558	127510991	-	Shew_0056	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
57	 56.31	0	68787..69452	+	221	127510992	-	Shew_0057	-	cytoplasmic chaperone TorD family protein
58	 53.73	0	69620..69820	+	66	127510993	-	Shew_0058	-	twin-arginine translocation pathway signal
59	 53.23	0	69872..72721	+	949	127510994	-	Shew_0059	-	molybdopterin oxidoreductase
60	 53.98	0	72749..73339	+	196	127510995	-	Shew_0060	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
61	 52.28	0	73390..74397	+	335	127510996	-	Shew_0061	-	formate dehydrogenase, gamma subunit
62	 48.99	-1	74889..75086	+	65	127510997	-	Shew_0062	-	hypothetical protein
63	 54.17	0	75104..77959	+	951	127510998	-	Shew_0063	-	molybdopterin oxidoreductase
64	 53.86	0	77980..78549	+	189	127510999	-	Shew_0064	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
65	 53.98	0	78618..79610	+	330	127511000	-	Shew_0065	-	formate dehydrogenase, gamma subunit
66	 54.37	0	79885..80250	+	121	127511001	-	Shew_0066	-	hypothetical protein
67	 56.86	0	80252..80761	-	169	127511002	-	Shew_0067	-	hypothetical protein
68	 61.59	+1	80976..82355	+	459	127511003	-	Shew_0068	-	fumarate lyase
69	 58.79	0	82400..83503	-	367	127511004	-	Shew_0069	-	hypothetical protein
70	 61.00	+1	83682..84845	-	387	127511005	-	Shew_0070	-	iron-containing alcohol dehydrogenase
71	 57.90	0	85050..85916	+	288	127511006	-	Shew_0071	-	AraC family transcriptional regulator
72	 56.32	0	85924..86445	-	173	127511007	-	Shew_0072	-	hypothetical protein
73	 53.94	0	86819..88162	+	447	127511008	-	Shew_0073	-	coproporphyrinogen III oxidase
74	 53.24	0	88882..89097	-	71	127511009	-	Shew_0075	-	hypothetical protein
75	 57.64	0	89390..89677	+	95	127511010	-	Shew_0076	-	antibiotic biosynthesis monooxygenase
76	 59.85	+1	89699..90652	+	317	127511011	-	Shew_0077	-	GCN5-related N-acetyltransferase
77	 60.05	+1	90789..91649	+	286	127511012	-	Shew_0078	-	ribokinase-like domain-containing protein
78	 56.79	0	91853..93310	-	485	127511013	-	Shew_0079	-	TAP domain-containing protein
79	 58.31	0	93574..94866	-	430	127511014	-	Shew_0080	-	integral membrane sensor signal transduction histidine kinase
80	 57.28	0	94873..95607	-	244	127511015	-	Shew_0081	-	two component transcriptional regulator
81	 54.89	0	95660..96109	-	149	127511016	-	Shew_0082	-	hypothetical protein
82	 59.02	0	96244..96936	+	230	127511017	-	Shew_0083	-	MOSC domain-containing protein
83	 53.89	0	97018..97338	+	106	127511018	-	Shew_0084	-	hypothetical protein
84	 59.89	+1	97414..99330	-	638	127511019	-	Shew_0085	-	methyl-accepting chemotaxis sensory transducer
85	 57.27	0	99591..101240	-	549	127511020	-	Shew_0086	-	electron-transferring-flavoprotein dehydrogenase
86	 55.13	0	101556..102569	+	337	127511021	moaA	Shew_0087	-	molybdenum cofactor biosynthesis protein A
87	 53.48	0	102681..103211	+	176	127511022	-	Shew_0088	-	molybdenum cofactor biosynthesis protein B
88	 58.49	0	103204..103680	+	158	127511023	moaC	Shew_0089	-	molybdenum cofactor biosynthesis protein C
89	 55.56	0	103730..103981	+	83	127511024	-	Shew_0090	-	molybdopterin converting factor, subunit 1
90	 59.40	0	103983..104450	+	155	127511025	-	Shew_0091	-	molybdopterin biosynthesis MoaE
91	 59.88	+1	104484..105308	+	274	127511026	-	Shew_0092	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
92	 59.18	0	105308..105988	+	226	127511027	-	Shew_0093	-	molybdate ABC transporter, inner membrane subunit
93	 61.53	+1	105969..107078	+	369	127511028	-	Shew_0094	-	ABC transporter-related protein
94	 57.78	0	107182..107541	+	119	127511029	-	Shew_0095	-	hypothetical protein
95	 52.70	0	107692..108228	+	178	127511030	-	Shew_0096	-	hypothetical protein
96	 56.64	0	108232..108909	+	225	127511031	-	Shew_0097	-	two component transcriptional regulator
97	 58.65	0	108959..110218	+	419	127511032	-	Shew_0098	-	integral membrane sensor signal transduction histidine kinase
98	 56.89	0	110231..110905	+	224	127511033	-	Shew_0099	-	pseudouridine synthase Rlu family protein
99	 51.79	0	110927..111094	+	55	127511034	-	Shew_0100	-	hypothetical protein
100	 59.95	+1	111320..111721	+	133	127511035	-	Shew_0101	-	endoribonuclease L-PSP
54.50	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.