IslandPath Analysis: Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.01   STD DEV: 5.72
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome - 1..4755700
4413 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.55	0	190..255	+	21	62178571	thrL	SC0001	-	thr operon leader peptide
2	 56.19	0	337..2799	+	820	62178572	thrA	SC0002	-	bifunctional aspartokinase I/homeserine dehydrogenase I
3	 57.96	+1	2801..3730	+	309	62178573	thrB	SC0003	-	homoserine kinase
4	 56.57	0	3734..5020	+	428	62178574	thrC	SC0004	-	threonine synthase
5	 50.26	0	5114..5887	-	257	62178575	yaaA	SC0005	-	hypothetical protein
6	 56.11	0	5966..7396	-	476	62178576	yaaJ	SC0006	-	AGCS family, alanine/glycine transport protein
7	 53.77	0	7665..8618	+	317	162139625	talB	SC0007	-	transaldolase B
8	 56.18	0	8729..9319	+	196	62178578	mogA	SC0008	-	molybdenum cofactor biosynthesis protein
9	 54.14	0	9376..9942	-	188	62178579	yaaH	SC0009	-	hypothetical protein
10	 54.06	0	10092..10805	-	237	62178580	htgA	SC0010	-	hypothetical protein
11	 49.63	0	10841..11245	-	134	62178581	yaaI	SC0011	-	hypothetical protein
12	 52.58	0	11594..13510	+	638	62178582	dnaK	SC0012	-	molecular chaperone DnaK
13	 54.04	0	13596..14735	+	379	62178583	dnaJ	SC0013	-	chaperone protein DnaJ
14	 40.51	-2	15015..15962	+	315	62178584	ybdO	SC0014	-	LysR family transcriptional regulator
15	 40.00	-2	16089..16433	+	114	62178585	-	SC0015	-	hypothetical protein
16	 51.12	0	16494..17027	-	177	62178586	-	SC0016	-	hypothetical protein
17	 40.25	-2	17044..17361	-	105	62178587	-	SC0017	-	hypothetical protein
18	 54.69	0	20059..23055	+	998	62178588	hmt	SC0018	-	putative hydroxymethyltransferase
19	 46.52	0	23336..24040	+	234	62178589	yaiV	SC0019	-	hypothetical protein
20	 52.12	0	24470..25012	+	180	62178590	bcfA	SC0020	-	fimbrial subunit
21	 50.97	0	24972..25799	+	275	62178591	bcfB	SC0021	-	fimbrial chaparone
22	 50.20	0	28426..29433	+	335	62178592	bcfD	SC0022	-	fimbrial subunit
23	 49.27	0	29434..29979	+	181	62178593	bcfE	SC0023	-	fimbrial subunit
24	 55.88	0	29995..30513	+	172	62178594	bcfF	SC0024	-	fimbrial subunit
25	 54.23	0	30479..31210	+	243	62178595	bcfG	SC0025	-	fimbrial chaparone
26	 54.96	0	31274..32119	+	281	62178596	bcfH	SC0026	-	hypothetical protein
27	 41.67	-1	32158..32445	+	95	62178597	-	SC0027	-	hypothetical protein
28	 40.22	-2	32545..32994	-	149	62178598	-	SC0028	-	hypothetical protein
29	 46.36	0	33693..33953	+	86	62178599	asl	SC0029	-	putative arylsulfatase
30	 43.97	-1	33978..34325	+	115	62178600	-	SC0030	-	hypothetical protein
31	 39.08	-2	34909..35673	+	254	62178601	yfeN	SC0031	-	hypothetical protein
32	 48.96	0	37290..38486	+	398	62178602	aslB	SC0032	-	putative arylsulfatase regulatory protein
33	 50.16	0	38504..39757	+	417	62178603	-	SC0033	-	hypothetical protein
34	 56.47	0	40445..41611	+	388	62178604	nhaA	SC0034	-	pH-dependent sodium/proton antiporter
35	 50.78	0	41673..42572	+	299	62178605	nhaR	SC0035	-	transcriptional activator NhaR
36	 54.36	0	42627..44666	-	679	62178606	-	SC0036	-	putative glycosyl hydrolase
37	 46.59	0	46534..46797	-	87	62178607	rpsT	SC0037	-	30S ribosomal protein S20
38	 47.69	0	46903..47118	+	71	62178608	yaaY	SC0038	-	putative cytoplasmic protein
39	 56.98	0	47126..48064	+	312	62178609	ribF	SC0039	-	bifunctional riboflavin kinase/FMN adenylyltransferase
40	 54.79	0	48073..50943	+	956	62178610	ileS	SC0040	-	isoleucyl-tRNA synthetase
41	 52.89	0	50943..51443	+	166	62178611	lspA	SC0041	-	lipoprotein signal peptidase
42	 54.67	0	51598..52047	+	149	62178612	slpA	SC0042	-	FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)
43	 57.62	0	52050..53000	+	316	62178613	ispH	SC0043	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
44	 48.38	0	53200..54402	+	400	62178614	-	SC0044	-	putative nitrite reductase
45	 56.57	0	54418..55338	+	306	62178615	rihC	SC0045	-	ribonucleoside hydrolase RihC
46	 48.33	0	55360..56046	-	228	62178616	citB	SC0046	-	putative transcription regulator sensor for citrate
47	 47.62	0	56048..57706	-	552	62178617	citA	SC0047	-	putative transcription regulator, histidine kinase for citrate
48	 64.21	+2	57802..59103	-	433	62178618	oadB	SC0048	-	putative oxalacetate decarboxylase, subunit beta
49	 64.02	+2	59116..60891	-	591	62178619	oadA	SC0049	-	pyruvate carboxylase subunit B
50	 56.79	0	60907..61149	-	80	62178620	oag3	SC0050	-	oxaloacetate decarboxylase subunit gamma
51	 49.22	0	61308..62648	-	446	62178621	citN	SC0051	-	putative citrate-sodium symport
52	 53.35	0	62893..63936	+	347	62178622	citC2	SC0052	-	putative citrate lyase synthetase (citrate (pro-3S)-lyase ligase
53	 56.80	0	63966..64259	+	97	62178623	citD2	SC0053	-	citrate lyase subunit gamma
54	 55.52	0	64256..65125	+	289	62178624	citE2	SC0054	-	putative citrate lyase beta chain (acyl lyase subunit)
55	 55.36	0	65136..66656	+	506	62178625	citF2	SC0055	-	putative citrate lyase alpha chain/citrate-ACP transferase
56	 55.49	0	66707..67207	+	166	62178626	citX2	SC0056	-	putative cytoplasmic protein
57	 54.57	0	67185..68093	+	302	62178627	citG2	SC0057	-	putative modifier of citrate lyase protein
58	 56.57	0	68273..69094	+	273	62178628	dapB	SC0058	-	dihydrodipicolinate reductase
59	 35.90	-2	69746..69901	-	51	62178629	-	SC0059	-	hypothetical protein
60	 56.40	0	69959..71107	+	382	62178630	carA	SC0060	-	carbamoyl phosphate synthase small subunit
61	 58.95	+1	71126..74353	+	1075	62178631	carB	SC0061	-	carbamoyl phosphate synthase large subunit
62	 46.46	0	74627..75022	+	131	62178632	caiF	SC0062	-	DNA-binding transcriptional activator CaiF
63	 55.78	0	75100..75696	-	198	62178633	caiE	SC0063	-	carnitine operon protein CaiE
64	 56.11	0	75806..76591	-	261	62178634	caiD	SC0064	-	carnitinyl-CoA dehydratase
65	 51.09	0	76645..78198	-	517	62178635	caiC	SC0065	-	putative crotonobetaine/carnitine-CoA ligase
66	 53.28	0	78261..79478	-	405	62178636	caiB	SC0066	-	crotonobetainyl-CoA:carnitine CoA-transferase
67	 52.58	0	79590..80732	-	380	62178637	caiA	SC0067	-	crotonobetainyl-CoA dehydrogenase
68	 53.75	0	80767..82284	-	505	62178638	caiT	SC0068	-	L-carnitine/gamma-butyrobetaine antiporter
69	 28.49	-2	82512..82697	+	61	62178639	-	SC0069	-	hypothetical protein
70	 52.27	0	82765..83535	+	256	62178640	fixA	SC0070	-	putative electron transfer flavoprotein FixA
71	 59.24	+1	83551..84492	+	313	62178641	fixB	SC0071	-	putative electron transfer flavoprotein FixB
72	 55.48	0	84542..85828	+	428	62178642	fixC	SC0072	-	putative oxidoreductase FixC
73	 55.21	0	85825..86112	+	95	62178643	fixX	SC0073	-	putative ferredoxin, carnitine metabolism
74	 53.99	0	86259..87599	+	446	62178644	yaaU	SC0074	-	MFS family transporter
75	 48.48	0	87688..87918	+	76	62178645	ygdI	SC0075	-	putative outer membrane lipoprotein
76	 46.76	0	88203..88619	+	138	62178646	-	SC0076	-	putative secreted protein
77	 46.39	0	88842..89132	-	96	62178647	-	SC0077	-	putative secreted protein
78	 38.46	-2	89342..89536	+	64	62178648	cysB	SC0078	-	putative inner membrane protein
79	 46.72	0	90030..91919	+	629	62178649	-	SC0079	-	putative sulfatase
80	 52.73	0	92473..93003	+	176	62178650	yabF	SC0080	-	glutathione-regulated potassium-efflux system ancillary protein KefF
81	 57.97	+1	92996..94858	+	620	62178651	kefC	SC0081	-	glutathione-regulated potassium-efflux system protein KefC
82	 53.75	0	95057..95536	+	159	62178652	folA	SC0082	-	dihydrofolate reductase
83	 55.59	0	95642..96490	-	282	62178653	apaH	SC0083	-	diadenosine tetraphosphatase
84	 54.50	0	96501..96878	-	125	62178654	apaG	SC0084	-	ApaG
85	 52.43	0	96881..97702	-	273	62178655	ksgA	SC0085	-	dimethyladenosine transferase
86	 58.48	+1	97699..98688	-	329	62178656	pdxA	SC0086	-	4-hydroxythreonine-4-phosphate dehydrogenase
87	 54.39	0	98688..99974	-	428	62178657	surA	SC0087	-	peptidyl-prolyl cis-trans isomerase SurA
88	 52.69	0	100028..102388	-	786	62178658	imp	SC0088	-	organic solvent tolerance protein
89	 53.75	0	102642..103454	+	270	62178659	djlA	SC0089	-	DNA-J like membrane chaperone protein
90	 57.42	0	103549..104208	-	219	62178660	rluA	SC0090	-	23S rRNA/tRNA pseudouridine synthase A
91	 57.07	0	104220..107126	-	968	62178661	hepA	SC0091	-	ATP-dependent helicase HepA
92	 56.80	0	107300..109651	-	783	62178662	polB	SC0092	-	DNA polymerase II
93	 49.44	0	109695..110315	-	206	62178663	-	SC0093	-	putative secreted protein
94	 42.86	-1	110833..111252	+	139	62178664	-	SC0094	-	hypothetical protein
95	 55.32	0	111258..111953	-	231	62178665	araD	SC0095	-	L-ribulose-5-phosphate 4-epimerase
96	 55.69	0	112094..113596	-	500	62178666	araA	SC0096	-	L-arabinose isomerase
97	 57.33	0	113546..113845	+	99	62178667	-	SC0097	-	hypothetical protein
98	 53.78	0	115653..116498	+	281	62178668	araC	SC0098	-	DNA-binding transcriptional regulator AraC
99	 57.16	0	116617..117384	+	255	62178669	yabI	SC0099	-	DedA family, membrane protein
100	 57.49	0	117423..118130	-	235	62178670	thiQ	SC0100	-	thiamine transporter ATP-binding subunit
52.01	MEAN

5.72	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.