IslandPath Analysis: Chlorobium tepidum TLS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.49   STD DEV: 6.35
Chlorobium tepidum TLS, complete genome - 1..2154946
2252 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 50.22	0	2..1126	-	374	21672842	dnaN	CT0001	-	DNA polymerase III, beta subunit
2	 53.51	0	1398..2879	-	493	21672843	dnaA	CT0002	-	chromosomal replication initiator protein DnaA
3	 50.62	0	3285..3446	+	53	21672844	rpmH	CT0003	-	50S ribosomal protein L34
4	 54.62	0	3494..3958	+	154	21672845	rnpA	CT0004	-	ribonuclease P
5	 49.60	0	4017..4268	+	83	21672846	-	CT0005	-	hypothetical protein
6	 57.59	0	4268..6040	+	590	21672847	-	CT0006	-	Oxa1/60 kDa IMP family protein
7	 57.96	0	6047..6643	+	198	21672848	-	CT0007	-	Pap2 superfamily protein
8	 66.88	+1	6640..7563	+	307	21672849	-	CT0008	-	Rok family protein
9	 60.19	0	7593..9044	+	483	21672850	-	CT0009	-	RNA methyltransferase
10	 58.15	0	9171..9839	-	222	21672851	tal	CT0010	-	putative translaldolase
11	 58.59	0	9849..10901	-	350	21672852	-	CT0011	-	deoxyhypusine synthase-like protein
12	 39.58	-2	10984..11079	+	31	21672853	-	CT0012	-	hypothetical protein
13	 59.03	0	11570..12604	+	344	21672854	trpS	CT0013	-	tryptophanyl-tRNA synthetase
14	 61.42	0	12601..13305	+	234	21672855	-	CT0014	-	HAD superfamily hydrolase
15	 59.12	0	13318..14973	+	551	21672856	argS	CT0015	-	arginyl-tRNA synthetase
16	 57.31	0	15001..15588	-	195	21672857	nadD	CT0016	-	nicotinate-nucleotide adenyltransferase, putative
17	 53.44	0	15585..16733	-	382	21672858	-	CT0017	-	hypothetical protein
18	 48.90	-1	16990..17535	-	181	21672859	atpH	CT0018	-	F0F1 ATP synthase subunit delta
19	 51.70	0	17554..18081	-	175	21672860	atpF	CT0019	-	ATP synthase F0, B subunit
20	 59.46	0	18167..18388	-	73	21672861	atpE	CT0020	-	ATP synthase F0, C subunit
21	 56.56	0	18473..19531	-	352	161485733	atpB-2	CT0021	-	F0F1 ATP synthase subunit A
22	 47.94	-1	19568..19882	+	104	21672863	-	CT0022	-	hypothetical protein
23	 52.02	0	19930..20250	-	106	21672864	-	CT0023	-	hypothetical protein
24	 58.48	0	20271..21260	-	329	21672865	galE	CT0024	-	UDP-glucose 4-epimerase
25	 48.89	-1	21468..21602	+	44	21672866	-	CT0025	-	hypothetical protein
26	 61.48	0	21622..22392	+	256	21672867	-	CT0026	-	hypothetical protein
27	 54.76	0	22376..22585	-	69	21672868	-	CT0027	-	hypothetical protein
28	 58.01	0	22801..23817	+	338	21672869	-	CT0028	-	CrtF-related protein
29	 62.11	+1	23975..25270	-	431	21672870	cat2	CT0029	-	4-hydroxybutyrate coenzyme A transferase
30	 60.15	0	25421..26725	-	434	21672871	ftsZ	CT0030	-	cell division protein FtsZ
31	 58.33	0	26772..28115	-	447	21672872	ftsA	CT0031	-	cell division protein FtsA
32	 59.21	0	28112..29050	-	312	21672873	-	CT0032	-	FtsQ protein, putative
33	 64.36	+1	29087..30514	-	475	21672874	murC	CT0033	-	UDP-N-acetylmuramate-alanine ligase
34	 64.29	+1	30518..31612	-	364	21672875	murG	CT0034	-	UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
35	 59.47	0	31609..32775	-	388	21672876	ftsW	CT0035	-	cell cycle protein FtsW
36	 65.81	+1	32835..34232	-	465	21672877	murD	CT0036	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
37	 54.83	0	34234..35340	-	368	21672878	mraY	CT0037	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
38	 64.36	+1	35348..36778	-	476	21672879	murF	CT0038	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase
39	 65.88	+1	36797..38323	-	508	21672880	murE	CT0039	-	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
40	 59.92	0	38323..40278	-	651	21672881	ftsI	CT0040	-	penicillin-binding protein 3
41	 53.42	0	40306..40773	-	155	21672882	-	CT0041	-	hypothetical protein
42	 58.93	0	40793..41749	-	318	21672883	-	CT0042	-	hypothetical protein
43	 59.83	0	41754..42221	-	155	21672884	-	CT0043	-	cell division protein MraZ
44	 51.85	0	42299..42838	+	179	21672885	-	CT0044	-	hypothetical protein
45	 55.25	0	42801..43667	+	288	21672886	-	CT0045	-	hypothetical protein
46	 58.53	0	43710..45392	-	560	21672887	fadD	CT0046	-	long-chain-fatty-acid-CoA ligase
47	 62.84	+1	45467..46747	-	426	21672888	bioA	CT0047	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
48	 62.08	+1	46744..47463	-	239	21672889	bioD	CT0048	-	dithiobiotin synthetase
49	 63.73	+1	47436..48218	-	260	21672890	bioC	CT0049	-	biotin synthesis protein, putative
50	 64.40	+1	48215..48877	-	220	21672891	-	CT0050	-	hypothetical protein
51	 65.19	+1	48892..50112	-	406	21672892	bioF-2	CT0051	-	8-amino-7-oxononanoate synthase
52	 63.57	+1	50109..51110	-	333	21672893	bioB	CT0052	-	biotin synthetase
53	 62.97	+1	51107..52108	-	333	21672894	birA	CT0053	-	BirA bifunctional protein
54	 57.21	0	52338..53987	-	549	21672895	amiB	CT0054	-	N-acetylmuramoyl-L-alanine amidase
55	 58.96	0	54413..56812	+	799	21672896	topA	CT0055	-	DNA topoisomerase I
56	 60.64	0	56948..59086	-	712	21672897	feoB-2	CT0056	-	ferrous iron transport protein B
57	 60.54	0	59083..59376	-	97	21672898	feoA-2	CT0057	-	ferrous iron transport protein A
58	 58.40	0	59511..59897	-	128	21672899	-	CT0058	-	Hit family protein
59	 52.11	0	59924..60658	-	244	21672900	-	CT0059	-	hypothetical protein
60	 59.62	0	60635..61315	+	226	21672901	-	CT0060	-	hypothetical protein
61	 63.01	+1	61355..62311	-	318	21672902	-	CT0061	-	hypothetical protein
62	 61.47	0	62295..63218	-	307	21672903	-	CT0062	-	hypothetical protein
63	 60.36	0	63202..64200	-	332	21672904	-	CT0063	-	magnesium chelatase, subunit I, putative
64	 60.64	0	64534..65595	+	353	21672905	gcp	CT0064	-	O-sialoglycoprotein endopeptidase
65	 55.65	0	65703..66056	+	117	21672906	-	CT0065	-	hypothetical protein
66	 58.13	0	66066..67166	+	366	21672907	carA	CT0066	-	carbamoyl phosphate synthase small subunit
67	 55.91	0	67505..67783	+	92	21672908	-	CT0067	-	hemagglutinin-related protein
68	 56.67	0	68072..68701	+	209	21672909	-	CT0068	-	hemagglutinin-related protein
69	 52.94	0	68828..68929	-	33	21672910	-	CT0069	-	hypothetical protein
70	 60.96	0	68965..70104	+	379	21672911	-	CT0070	-	aminotransferase, class V
71	 62.19	+1	70164..70811	+	215	21672912	-	CT0071	-	hypothetical protein
72	 62.66	+1	70817..72238	+	473	21672913	-	CT0072	-	BchE/P-methylase family protein
73	 60.19	0	72338..72769	+	143	21672914	-	CT0073	-	cytochrome c-555, membrane-bound
74	 39.72	-2	72824..72964	+	46	21672915	-	CT0074	-	hypothetical protein
75	 56.88	0	72989..73315	+	108	21672916	-	CT0075	-	cytochrome c-555
76	 52.06	0	73469..73735	+	88	21672917	-	CT0076	-	hypothetical protein
77	 61.42	0	73755..74555	+	266	21672918	proC	CT0077	-	pyrroline-5-carboxylate reductase
78	 58.44	0	74555..75916	+	453	21672919	-	CT0078	-	hypothetical protein
79	 58.33	0	75939..76742	-	267	21672920	ugpQ	CT0079	-	glycerophosphoryl diester phosphodiesterase
80	 49.02	-1	76871..77176	-	101	21672921	-	CT0080	-	hypothetical protein
81	 56.50	0	77409..77585	+	58	21672922	-	CT0081	-	Ric1 protein
82	 58.97	0	77774..78202	+	142	21672923	-	CT0082	-	hypothetical protein
83	 62.01	+1	78362..78919	+	185	21672924	pyrE	CT0083	-	orotate phosphoribosyltransferase
84	 61.25	0	78928..79794	+	288	21672925	tyrA	CT0084	-	prephenate dehydrogenase
85	 57.16	0	79791..80642	+	283	21672926	-	CT0085	-	hypothetical protein
86	 61.90	+1	80671..82158	+	495	21672927	-	CT0086	-	hypothetical protein
87	 61.78	0	82260..82832	-	190	21672928	-	CT0087	-	hypothetical protein
88	 60.14	0	82845..83687	-	280	21672929	kdsA	CT0088	-	2-dehydro-3-deoxyphosphooctonate aldolase
89	 60.14	0	83816..85132	+	438	21672930	clpB-2	CT0089	-	ATP-dependent Clp protease, ATP-binding subunit ClpB
90	 58.00	0	85187..86305	+	372	21672931	-	CT0090	-	glycosy hydrolase family protein
91	 58.94	0	86302..86793	+	163	21672932	sixA	CT0091	-	phosphohistidine phosphatase SixA
92	 62.38	+1	86889..87890	-	333	21672933	gpsA	CT0092	-	glycerol-3-phosphate dehydrogenase, NAD-dependent
93	 57.94	0	87904..88602	-	232	21672934	-	CT0093	-	hypothetical protein
94	 60.40	0	88645..89634	-	329	21672935	purM	CT0094	-	phosphoribosylaminoimidazole synthetase
95	 59.09	0	89683..91095	-	470	21672936	lysC	CT0095	-	aspartate kinase III
96	 39.81	-2	91089..91196	-	35	21672937	-	CT0096	-	hypothetical protein
97	 56.02	0	91182..91829	+	215	21672938	-	CT0097	-	NLP/P60 family protein
98	 58.51	0	91963..92832	+	289	21672939	prmA	CT0098	-	ribosomal protein L11 methyltransferase
99	 62.74	+1	92946..93938	+	330	21672940	-	CT0099	-	exopolyphosphatase, putative
100	 61.75	0	93942..95141	-	399	21672941	-	CT0100	-	hypothetical protein
55.49	MEAN

6.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.