IslandPath Analysis: Borrelia afzelii PKo



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.07   STD DEV: 3.95
Borrelia afzelii PKo, complete genome - 1..905394
855 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.24	0	531..1550	-	339	111114824	-	BAPKO_0001	-	hypothetical protein
2	 26.56	0	1538..3013	-	491	111114825	-	BAPKO_0002	-	hypothetical protein
3	 26.58	0	3156..4946	+	596	111114826	femD	BAPKO_0003	-	phosphoglucomutase
4	 31.23	0	5023..6069	-	348	111114827	trsA	BAPKO_0004	-	tryptophanyl-tRNA synthetase
5	 28.10	0	6072..7160	-	362	111114828	-	BAPKO_0005	-	hypothetical protein
6	 27.97	0	7218..8075	-	285	111114829	-	BAPKO_0006	-	hypothetical protein
7	 28.15	0	8184..8954	+	256	111114830	-	BAPKO_0007	-	hypothetical protein
8	 24.18	0	8959..9963	+	334	111114831	-	BAPKO_0008	-	hypothetical protein
9	 25.33	0	9960..10334	+	124	111114832	-	BAPKO_0009	-	holo-acyl-carrier protein synthase, putative
10	 28.21	0	10338..11177	+	279	111114833	-	BAPKO_0010	-	hypothetical protein
11	 26.86	0	11178..11918	+	246	111114834	truA	BAPKO_0011	-	tRNA pseudouridine synthase A
12	 22.50	-1	11911..12510	+	199	111114835	-	BAPKO_0012	-	hypothetical protein
13	 25.15	0	12503..14494	+	663	111114836	priA	BAPKO_0013	-	primosomal protein N
14	 31.89	0	14491..15114	-	207	111114837	udk	BAPKO_0014	-	uridine kinase
15	 24.00	-1	15114..15488	-	124	111114838	glpE	BAPKO_0015	-	glpE protein
16	 28.92	0	15616..16590	+	324	111114839	-	BAPKO_0016	-	hypothetical protein
17	 26.50	0	16587..17567	-	326	111114840	-	BAPKO_0017	-	hypothetical protein
18	 26.71	0	17574..18086	-	170	111114841	-	BAPKO_0018	-	hypothetical protein
19	 31.77	0	18094..19761	-	555	111114842	pfpB	BAPKO_0019	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
20	 29.30	0	19841..20881	-	346	111114843	-	BAPKO_0020	-	S-adenosylmethionine: tRNA ribosyltransferase- isomerase
21	 33.81	+1	20856..21899	-	347	111114844	ruvB	BAPKO_0021	-	Holliday junction DNA helicase B
22	 28.76	0	21959..22549	-	196	111114845	ruvA	BAPKO_0022	-	Holliday junction DNA helicase
23	 29.39	0	22619..23758	+	379	111114846	-	BAPKO_0023	-	hypothetical protein
24	 33.61	+1	23773..24504	-	243	111114847	-	BAPKO_0024	-	hypothetical protein
25	 31.57	0	24505..25410	-	301	111114848	folD	BAPKO_0025	-	methylenetetrahydrofolate dehydrogenase
26	 28.14	0	25557..26192	+	211	111114849	-	BAPKO_0026	-	hypothetical protein
27	 30.38	0	26200..27249	+	349	111114850	-	BAPKO_0027	-	putative lipoprotein
28	 20.37	-1	27235..27666	-	143	111114851	-	BAPKO_0028	-	hypothetical protein
29	 23.90	-1	27656..28291	-	211	111114852	lepB-1	BAPKO_0029	-	signal peptidase I
30	 30.07	0	28293..29273	-	326	111114853	lepB-2	BAPKO_0030	-	signal peptidase I
31	 24.18	0	29344..30807	+	487	111114854	-	BAPKO_0031	-	hypothetical protein
32	 24.28	0	30810..31262	+	150	111114855	smpB	BAPKO_0032	-	SsrA-binding protein
33	 19.61	-2	31133..31285	-	50	111114856	-	BAPKO_0033	-	hypothetical protein
34	 34.08	+1	31344..31880	-	178	111114857	-	BAPKO_0034	-	hypothetical protein
35	 27.59	0	31948..33828	-	626	111114858	parC	BAPKO_0035	-	DNA topoisomerase IV subunit A
36	 29.22	0	33828..35627	-	599	111114859	parE	BAPKO_0036	-	DNA topoisomerase IV subunit B
37	 27.51	0	35648..36385	-	245	111114860	plsC	BAPKO_0037	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
38	 25.00	0	36394..37917	-	507	111114861	-	BAPKO_0038	-	hypothetical protein
39	 25.75	0	37930..39432	-	500	111114862	-	BAPKO_0039	-	hypothetical protein
40	 25.99	0	39622..40479	+	285	111114863	cheR-1	BAPKO_0040	-	chemotaxis protein methyltransferase
41	 27.23	0	40544..41215	-	223	111114864	phoU	BAPKO_0041	-	phosphate transport system regulatory protein
42	 25.31	0	41226..42260	-	344	111114865	-	BAPKO_0042	-	hypothetical protein
43	 23.13	-1	42257..42658	-	133	111114866	-	BAPKO_0043	-	hypothetical protein
44	 25.70	0	42684..45134	-	816	111114867	-	BAPKO_0045	-	P115 protein
45	 27.29	0	45227..45772	+	181	111114868	rnhB	BAPKO_0046	-	ribonuclease H
46	 32.26	+1	45790..46161	-	123	111114869	-	BAPKO_0047	-	hypothetical protein
47	 29.17	0	46695..46814	-	39	111114870	-	BAPKO_0049	-	hypothetical protein
48	 27.56	0	46933..47607	+	224	111114871	-	BAPKO_0050	-	hypothetical protein
49	 22.22	-1	47654..48373	+	239	111114872	-	BAPKO_0051	-	hypothetical protein
50	 27.65	0	48370..49038	-	222	111114873	spoU	BAPKO_0052	-	spoU protein
51	 27.68	0	49108..49779	+	223	111114874	ung	BAPKO_0053	-	uracil-DNA glycosylase
52	 28.37	0	49853..50215	-	120	111114875	secG	BAPKO_0054	-	preprotein translocase subunit SecG
53	 33.07	+1	50231..50992	-	253	111114876	-	BAPKO_0055	-	triosephosphate isomerase
54	 35.62	+1	50994..52175	-	393	111114877	pgk	BAPKO_0056	-	phosphoglycerate kinase
55	 35.12	+1	52200..53207	-	335	111114878	gap	BAPKO_0057	-	glyceraldehyde 3-phosphate dehydrogenase
56	 26.64	0	53282..55252	-	656	111114879	-	BAPKO_0058	-	hypothetical protein
57	 30.90	0	55249..56028	-	259	111114880	tlyC	BAPKO_0059	-	hemolysin
58	 23.75	-1	56029..56487	-	152	111114881	-	BAPKO_0060	-	putative metalloprotease
59	 32.49	+1	56570..56923	-	117	111114882	trxA	BAPKO_0061	-	thioredoxin
60	 25.10	0	56997..57713	+	238	111114883	-	BAPKO_0062	-	hypothetical protein
61	 28.77	0	57764..58771	-	335	111114884	-	BAPKO_0063	-	hypothetical protein
62	 30.70	0	58821..59768	-	315	111114885	fmt	BAPKO_0064	-	methionyl-tRNA formyltransferase
63	 29.92	0	59765..60262	-	165	111114886	def	BAPKO_0065	-	polypeptide deformylase
64	 31.48	0	60269..60322	-	17	111114887	-	BAPKO_0066	-	hypothetical protein
65	 24.89	0	60295..60981	-	228	111114888	-	BAPKO_0067	-	hypothetical protein
66	 31.70	0	60978..62756	-	592	111114889	-	BAPKO_0068	-	peptidase, putative
67	 28.05	0	62871..63779	+	302	111114890	-	BAPKO_0069	-	hypothetical protein
68	 30.35	0	63764..65002	+	412	111114891	-	BAPKO_0070	-	aminopeptidase II
69	 32.90	+1	65017..65478	+	153	111114892	-	BAPKO_0071	-	hypothetical protein
70	 22.81	-1	65495..66967	+	490	111114893	-	BAPKO_0072	-	hypothetical protein
71	 23.63	-1	66975..69293	+	772	111114894	-	BAPKO_0073	-	hypothetical protein
72	 20.14	-2	69290..69850	+	186	111114895	-	BAPKO_0074	-	hypothetical protein
73	 32.59	+1	70134..70943	+	269	111114896	prfB	BAPKO_0075	-	peptide chain release factor 2
74	 24.89	0	70925..72334	+	469	111114897	-	BAPKO_0076	-	hypothetical protein
75	 24.23	0	72371..73216	+	281	111114898	ftsY	BAPKO_0077	-	signal recognition particle-docking protein FtsY
76	 23.42	-1	73213..74241	+	342	111114899	-	BAPKO_0078	-	hypothetical protein
77	 22.49	-1	74242..75495	+	417	111114900	-	BAPKO_0079	-	hypothetical protein
78	 26.55	0	75485..76177	+	230	111114901	-	BAPKO_0080	-	ABC transporter, ATP-binding protein
79	 22.01	-1	76174..77427	+	417	111114902	-	BAPKO_0081	-	hypothetical protein
80	 26.70	0	77438..78733	-	431	111114903	-	BAPKO_0082	-	hypothetical protein
81	 28.66	0	78726..79046	-	106	111114904	-	BAPKO_0083	-	hypothetical protein
82	 27.11	0	79231..80499	+	422	111114905	nifS	BAPKO_0084	-	nifS protein
83	 25.17	0	80709..81137	+	142	111114906	-	BAPKO_0085	-	hypothetical protein
84	 30.14	0	81134..82669	+	511	111114907	-	BAPKO_0086	-	hypothetical protein
85	 29.69	0	82507..82698	-	63	111114908	-	BAPKO_0087	-	hypothetical protein
86	 31.55	0	82699..83649	-	316	111114909	ldh	BAPKO_0088	-	L-lactate dehydrogenase
87	 31.84	0	83770..85575	-	601	111114910	lepA	BAPKO_0089	-	GTP-binding protein LepA
88	 26.17	0	85609..86571	-	320	111114911	-	BAPKO_0090	-	hypothetical protein
89	 39.08	+2	86658..87092	-	144	111114912	-	BAPKO_0091	-	V-type ATP synthase subunit K
90	 27.40	0	87109..88962	-	617	111114913	-	BAPKO_0092	-	V-type ATP synthase subunit I
91	 28.33	0	88946..89545	-	199	111114914	atpD	BAPKO_0093	-	V-type ATP synthase subunit D
92	 35.40	+1	89548..90852	-	434	111114915	atpB	BAPKO_0094	-	V-type ATP synthase subunit B
93	 34.13	+1	90874..92628	-	584	111114916	atpA	BAPKO_0095	-	V-type ATP synthase subunit A
94	 25.41	0	92615..93157	-	180	111114917	-	BAPKO_0096	-	hypothetical protein
95	 29.83	0	93170..93769	-	199	111114918	-	BAPKO_0097	-	V-type ATP synthase subunit E
96	 30.75	0	93955..94341	-	128	111114919	-	BAPKO_0098	-	hypothetical protein
97	 26.02	0	94347..96683	-	778	111114920	-	BAPKO_0099	-	DNA mismatch repair protein, putative
98	 28.35	0	96673..97596	-	307	111114921	-	BAPKO_0100	-	hypothetical protein
99	 28.50	0	97593..98378	-	261	111114922	murI	BAPKO_0101	-	glutamate racemase
100	 30.67	0	98540..99928	+	462	111114923	asnC	BAPKO_0102	-	asparaginyl-tRNA synthetase
28.07	MEAN

3.95	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.