IslandPathversion 1.0

IslandPath Analysis: Yersinia pseudotuberculosis PB1/+



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.60 STD DEV: 5.37
Yersinia pseudotuberculosis PB1/+, complete genome - 1..4695619
4150 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.67	0	37..1389	+	450	186893345	-	YPTS_0001	-	chromosomal replication initiator protein DnaA
2	 50.41	0	1394..2494	+	366	186893346	-	YPTS_0002	-	DNA polymerase III, beta subunit
3	 52.67	0	2667..3752	+	361	186893347	-	YPTS_0003	-	DNA replication and repair protein RecF
4	 49.48	0	3772..6186	+	804	186893348	-	YPTS_0004	-	DNA gyrase, B subunit
5	 47.53	0	6402..7211	+	269	186893349	-	YPTS_0005	-	Cof-like hydrolase
6	 47.87	0	7824..8339	+	171	186893350	-	YPTS_0006	-	IS1661 DNA-binding protein
7	 46.44	0	8393..9178	+	261	186893351	-	YPTS_0007	-	integrase catalytic region
8	 57.66	+1	9117..9338	-	73	186893352	-	YPTS_0008	-	hypothetical protein
9	 51.79	0	9737..10966	+	409	186893353	-	YPTS_0009	-	major facilitator transporter
10	 47.55	0	11115..11318	-	67	186893354	-	YPTS_0010	-	hypothetical protein
11	 26.42	-2	11439..11597	+	52	186893355	-	YPTS_0011	-	hypothetical protein
12	 38.14	-1	11676..12257	+	193	186893356	-	YPTS_0012	-	hypothetical protein
13	 49.41	0	12526..13713	+	395	186893357	-	YPTS_0013	-	transposase mutator type
14	 40.68	-1	13793..14323	-	176	186893358	-	YPTS_0014	-	molybdopterin-guanine dinucleotide biosynthesis protein B
15	 43.54	0	14323..14910	-	195	186893359	-	YPTS_0015	-	molybdopterin-guanine dinucleotide biosynthesis protein A
16	 41.11	-1	15064..15333	+	89	186893360	-	YPTS_0016	-	hypothetical protein
17	 46.50	0	15424..16410	+	328	186893361	-	YPTS_0017	-	aminoglycoside phosphotransferase
18	 42.15	-1	16438..17061	+	207	186893362	-	YPTS_0018	-	DSBA oxidoreductase
19	 47.45	0	17552..20350	+	932	186893363	-	YPTS_0019	-	DNA polymerase I
20	 46.85	0	20758..21408	-	216	186893364	-	YPTS_0020	-	GTP-binding protein HSR1-related
21	 48.50	0	22153..22719	+	188	186893365	-	YPTS_0021	-	hypothetical protein
22	 47.74	0	22906..24279	+	457	186893366	-	YPTS_0022	-	oxygen-independent coproporphyrinogen III oxidase
23	 52.72	0	24333..25745	-	470	186893367	-	YPTS_0023	-	nitrogen metabolism transcriptional regulator, NtrC, Fis family
24	 49.24	0	25753..26802	-	349	186893368	-	YPTS_0024	-	signal transduction histidine kinase, nitrogen specific, NtrB
25	 50.71	0	27055..28464	-	469	186893369	-	YPTS_0025	-	glutamine synthetase, type I
26	 49.01	0	29027..30850	+	607	186893370	-	YPTS_0026	-	GTP-binding protein TypA
27	 44.16	0	31172..31762	+	196	186893371	-	YPTS_0027	-	HAD family hydrolase
28	 47.68	0	31859..32743	+	294	186893372	-	YPTS_0028	-	ribonuclease BN
29	 48.86	0	32750..33187	+	145	186893373	-	YPTS_0029	-	D-tyrosyl-tRNA(Tyr) deacylase
30	 50.87	0	33373..34296	+	307	186893374	-	YPTS_0030	-	thioesterase domain-containing protein
31	 48.19	0	34431..36140	-	569	186893375	-	YPTS_0031	-	AsmA family protein
32	 50.88	0	36287..37705	-	472	186893376	-	YPTS_0032	-	uracil-xanthine permease
33	 50.21	0	37910..39124	+	404	186893377	-	YPTS_0033	-	sodium/glutamate symporter
34	 51.63	0	39490..41571	-	693	186893378	-	YPTS_0034	-	ATP-dependent DNA helicase RecG
35	 49.70	0	41572..42231	-	219	186893379	-	YPTS_0035	-	tRNA/rRNA methyltransferase (SpoU)
36	 48.93	0	42270..44378	-	702	186893380	-	YPTS_0036	-	(p)ppGpp synthetase I, SpoT/RelA
37	 51.45	0	44398..44673	-	91	186893381	-	YPTS_0037	-	DNA-directed RNA polymerase, omega subunit
38	 46.47	0	44728..45351	-	207	186893382	-	YPTS_0038	-	guanylate kinase
39	 48.24	0	45752..47455	+	567	186893383	-	YPTS_0039	-	NAD-dependent DNA ligase adenylation
40	 47.41	0	47475..48092	-	205	186893384	-	YPTS_0040	-	hypothetical protein
41	 36.56	-2	48435..48527	-	30	186893385	-	YPTS_0041	-	hypothetical protein
42	 48.26	0	48613..49476	-	287	186893386	-	YPTS_0042	-	YicC domain-containing protein
43	 51.32	0	49603..50319	+	238	186893387	-	YPTS_0043	-	ribonuclease PH
44	 50.46	0	50486..51133	+	215	186893388	-	YPTS_0044	-	orotate phosphoribosyltransferase
45	 47.91	0	51268..51864	-	198	186893389	-	YPTS_0045	-	TetR family transcriptional regulator
46	 48.80	0	51986..52444	-	152	186893390	-	YPTS_0046	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
47	 47.75	0	52422..53753	-	443	186893391	-	YPTS_0047	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
48	 45.44	0	53833..54501	+	222	186893392	-	YPTS_0048	-	DNA repair protein RadC
49	 50.63	0	54764..55000	+	78	186893393	-	YPTS_0049	-	ribosomal protein L28
50	 39.29	-1	55012..55179	+	55	186893394	-	YPTS_0050	-	ribosomal protein L33
51	 48.89	0	55262..56071	+	269	186893395	-	YPTS_0051	-	formamidopyrimidine-DNA glycosylase
52	 46.46	0	56077..56556	-	159	186893396	-	YPTS_0052	-	pantetheine-phosphate adenylyltransferase
53	 46.74	0	56553..57335	-	260	186893397	-	YPTS_0053	-	glycosyl transferase family protein
54	 49.39	0	57336..58655	-	439	186893398	-	YPTS_0054	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
55	 50.62	0	59033..59998	-	321	186893399	-	YPTS_0055	-	lipopolysaccharide heptosyltransferase I
56	 51.83	0	59998..61062	-	354	186893400	-	YPTS_0056	-	lipopolysaccharide heptosyltransferase II
57	 45.12	0	61093..62025	-	310	186893401	-	YPTS_0057	-	ADP-L-glycero-D-manno-heptose-6-epimerase
58	 50.08	0	62271..63482	+	403	186893402	-	YPTS_0058	-	2-amino-3-ketobutyrate coenzyme A ligase
59	 47.86	0	63492..64517	+	341	186893403	-	YPTS_0059	-	L-threonine 3-dehydrogenase
60	 49.26	0	64655..65665	-	336	186893404	-	YPTS_0060	-	protein of unknown function DUF610 YibQ
61	 49.96	0	65689..67059	-	456	186893405	-	YPTS_0061	-	peptidase M23
62	 50.32	0	67069..68616	-	515	186893406	-	YPTS_0062	-	phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
63	 45.52	0	69014..69448	+	144	186893407	-	YPTS_0063	-	rhodanese domain-containing protein
64	 51.41	0	69567..69815	+	82	186893408	-	YPTS_0064	-	glutaredoxin 3
65	 48.43	0	69903..70379	+	158	186893409	-	YPTS_0065	-	protein-export protein SecB
66	 51.57	0	70379..71398	+	339	186893410	-	YPTS_0066	-	NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
67	 49.70	0	71661..72485	+	274	186893411	-	YPTS_0067	-	serine O-acetyltransferase
68	 49.08	0	72608..73096	-	162	186893412	-	YPTS_0068	-	RNA methyltransferase
69	 52.11	0	73285..74349	+	354	186893413	-	YPTS_0069	-	AraC family transcriptional regulator
70	 49.82	0	74417..75793	-	458	186893414	-	YPTS_0070	-	integral membrane sensor signal transduction histidine kinase
71	 49.93	0	75790..76488	-	232	186893415	-	YPTS_0071	-	two component transcriptional regulator
72	 46.42	0	76662..77150	+	162	186893416	-	YPTS_0072	-	protein of unknown function Spy-related
73	 44.44	0	77401..77508	+	35	186893417	-	YPTS_0073	-	hypothetical protein
74	 51.04	0	77828..78787	+	319	186893418	-	YPTS_0074	-	putative transposase YhgA family protein
75	 46.34	0	79093..79215	-	40	186893419	-	YPTS_0075	-	transposase, IS4 family protein
76	 48.62	0	79349..80251	+	300	186893420	-	YPTS_0076	-	cation diffusion facilitator family transporter
77	 47.66	0	80469..81452	+	327	186893421	-	YPTS_0077	-	6-phosphofr