IslandPath Analysis: Yersinia pseudotuberculosis PB1/+



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.60   STD DEV: 5.37
Yersinia pseudotuberculosis PB1/+, complete genome - 1..4695619
4150 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.67	0	37..1389	+	450	186893345	-	YPTS_0001	-	chromosomal replication initiator protein DnaA
2	 50.41	0	1394..2494	+	366	186893346	-	YPTS_0002	-	DNA polymerase III, beta subunit
3	 52.67	0	2667..3752	+	361	186893347	-	YPTS_0003	-	DNA replication and repair protein RecF
4	 49.48	0	3772..6186	+	804	186893348	-	YPTS_0004	-	DNA gyrase, B subunit
5	 47.53	0	6402..7211	+	269	186893349	-	YPTS_0005	-	Cof-like hydrolase
6	 47.87	0	7824..8339	+	171	186893350	-	YPTS_0006	-	IS1661 DNA-binding protein
7	 46.44	0	8393..9178	+	261	186893351	-	YPTS_0007	-	integrase catalytic region
8	 57.66	+1	9117..9338	-	73	186893352	-	YPTS_0008	-	hypothetical protein
9	 51.79	0	9737..10966	+	409	186893353	-	YPTS_0009	-	major facilitator transporter
10	 47.55	0	11115..11318	-	67	186893354	-	YPTS_0010	-	hypothetical protein
11	 26.42	-2	11439..11597	+	52	186893355	-	YPTS_0011	-	hypothetical protein
12	 38.14	-1	11676..12257	+	193	186893356	-	YPTS_0012	-	hypothetical protein
13	 49.41	0	12526..13713	+	395	186893357	-	YPTS_0013	-	transposase mutator type
14	 40.68	-1	13793..14323	-	176	186893358	-	YPTS_0014	-	molybdopterin-guanine dinucleotide biosynthesis protein B
15	 43.54	0	14323..14910	-	195	186893359	-	YPTS_0015	-	molybdopterin-guanine dinucleotide biosynthesis protein A
16	 41.11	-1	15064..15333	+	89	186893360	-	YPTS_0016	-	hypothetical protein
17	 46.50	0	15424..16410	+	328	186893361	-	YPTS_0017	-	aminoglycoside phosphotransferase
18	 42.15	-1	16438..17061	+	207	186893362	-	YPTS_0018	-	DSBA oxidoreductase
19	 47.45	0	17552..20350	+	932	186893363	-	YPTS_0019	-	DNA polymerase I
20	 46.85	0	20758..21408	-	216	186893364	-	YPTS_0020	-	GTP-binding protein HSR1-related
21	 48.50	0	22153..22719	+	188	186893365	-	YPTS_0021	-	hypothetical protein
22	 47.74	0	22906..24279	+	457	186893366	-	YPTS_0022	-	oxygen-independent coproporphyrinogen III oxidase
23	 52.72	0	24333..25745	-	470	186893367	-	YPTS_0023	-	nitrogen metabolism transcriptional regulator, NtrC, Fis family
24	 49.24	0	25753..26802	-	349	186893368	-	YPTS_0024	-	signal transduction histidine kinase, nitrogen specific, NtrB
25	 50.71	0	27055..28464	-	469	186893369	-	YPTS_0025	-	glutamine synthetase, type I
26	 49.01	0	29027..30850	+	607	186893370	-	YPTS_0026	-	GTP-binding protein TypA
27	 44.16	0	31172..31762	+	196	186893371	-	YPTS_0027	-	HAD family hydrolase
28	 47.68	0	31859..32743	+	294	186893372	-	YPTS_0028	-	ribonuclease BN
29	 48.86	0	32750..33187	+	145	186893373	-	YPTS_0029	-	D-tyrosyl-tRNA(Tyr) deacylase
30	 50.87	0	33373..34296	+	307	186893374	-	YPTS_0030	-	thioesterase domain-containing protein
31	 48.19	0	34431..36140	-	569	186893375	-	YPTS_0031	-	AsmA family protein
32	 50.88	0	36287..37705	-	472	186893376	-	YPTS_0032	-	uracil-xanthine permease
33	 50.21	0	37910..39124	+	404	186893377	-	YPTS_0033	-	sodium/glutamate symporter
34	 51.63	0	39490..41571	-	693	186893378	-	YPTS_0034	-	ATP-dependent DNA helicase RecG
35	 49.70	0	41572..42231	-	219	186893379	-	YPTS_0035	-	tRNA/rRNA methyltransferase (SpoU)
36	 48.93	0	42270..44378	-	702	186893380	-	YPTS_0036	-	(p)ppGpp synthetase I, SpoT/RelA
37	 51.45	0	44398..44673	-	91	186893381	-	YPTS_0037	-	DNA-directed RNA polymerase, omega subunit
38	 46.47	0	44728..45351	-	207	186893382	-	YPTS_0038	-	guanylate kinase
39	 48.24	0	45752..47455	+	567	186893383	-	YPTS_0039	-	NAD-dependent DNA ligase adenylation
40	 47.41	0	47475..48092	-	205	186893384	-	YPTS_0040	-	hypothetical protein
41	 36.56	-2	48435..48527	-	30	186893385	-	YPTS_0041	-	hypothetical protein
42	 48.26	0	48613..49476	-	287	186893386	-	YPTS_0042	-	YicC domain-containing protein
43	 51.32	0	49603..50319	+	238	186893387	-	YPTS_0043	-	ribonuclease PH
44	 50.46	0	50486..51133	+	215	186893388	-	YPTS_0044	-	orotate phosphoribosyltransferase
45	 47.91	0	51268..51864	-	198	186893389	-	YPTS_0045	-	TetR family transcriptional regulator
46	 48.80	0	51986..52444	-	152	186893390	-	YPTS_0046	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
47	 47.75	0	52422..53753	-	443	186893391	-	YPTS_0047	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
48	 45.44	0	53833..54501	+	222	186893392	-	YPTS_0048	-	DNA repair protein RadC
49	 50.63	0	54764..55000	+	78	186893393	-	YPTS_0049	-	ribosomal protein L28
50	 39.29	-1	55012..55179	+	55	186893394	-	YPTS_0050	-	ribosomal protein L33
51	 48.89	0	55262..56071	+	269	186893395	-	YPTS_0051	-	formamidopyrimidine-DNA glycosylase
52	 46.46	0	56077..56556	-	159	186893396	-	YPTS_0052	-	pantetheine-phosphate adenylyltransferase
53	 46.74	0	56553..57335	-	260	186893397	-	YPTS_0053	-	glycosyl transferase family protein
54	 49.39	0	57336..58655	-	439	186893398	-	YPTS_0054	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
55	 50.62	0	59033..59998	-	321	186893399	-	YPTS_0055	-	lipopolysaccharide heptosyltransferase I
56	 51.83	0	59998..61062	-	354	186893400	-	YPTS_0056	-	lipopolysaccharide heptosyltransferase II
57	 45.12	0	61093..62025	-	310	186893401	-	YPTS_0057	-	ADP-L-glycero-D-manno-heptose-6-epimerase
58	 50.08	0	62271..63482	+	403	186893402	-	YPTS_0058	-	2-amino-3-ketobutyrate coenzyme A ligase
59	 47.86	0	63492..64517	+	341	186893403	-	YPTS_0059	-	L-threonine 3-dehydrogenase
60	 49.26	0	64655..65665	-	336	186893404	-	YPTS_0060	-	protein of unknown function DUF610 YibQ
61	 49.96	0	65689..67059	-	456	186893405	-	YPTS_0061	-	peptidase M23
62	 50.32	0	67069..68616	-	515	186893406	-	YPTS_0062	-	phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
63	 45.52	0	69014..69448	+	144	186893407	-	YPTS_0063	-	rhodanese domain-containing protein
64	 51.41	0	69567..69815	+	82	186893408	-	YPTS_0064	-	glutaredoxin 3
65	 48.43	0	69903..70379	+	158	186893409	-	YPTS_0065	-	protein-export protein SecB
66	 51.57	0	70379..71398	+	339	186893410	-	YPTS_0066	-	NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
67	 49.70	0	71661..72485	+	274	186893411	-	YPTS_0067	-	serine O-acetyltransferase
68	 49.08	0	72608..73096	-	162	186893412	-	YPTS_0068	-	RNA methyltransferase
69	 52.11	0	73285..74349	+	354	186893413	-	YPTS_0069	-	AraC family transcriptional regulator
70	 49.82	0	74417..75793	-	458	186893414	-	YPTS_0070	-	integral membrane sensor signal transduction histidine kinase
71	 49.93	0	75790..76488	-	232	186893415	-	YPTS_0071	-	two component transcriptional regulator
72	 46.42	0	76662..77150	+	162	186893416	-	YPTS_0072	-	protein of unknown function Spy-related
73	 44.44	0	77401..77508	+	35	186893417	-	YPTS_0073	-	hypothetical protein
74	 51.04	0	77828..78787	+	319	186893418	-	YPTS_0074	-	putative transposase YhgA family protein
75	 46.34	0	79093..79215	-	40	186893419	-	YPTS_0075	-	transposase, IS4 family protein
76	 48.62	0	79349..80251	+	300	186893420	-	YPTS_0076	-	cation diffusion facilitator family transporter
77	 47.66	0	80469..81452	+	327	186893421	-	YPTS_0077	-	6-phosphofructokinase
78	 45.76	0	81673..82662	+	329	186893422	-	YPTS_0078	-	sulfate ABC transporter, periplasmic sulfate-binding protein
79	 46.81	0	82740..82880	+	46	186893423	-	YPTS_0079	-	hypothetical protein
80	 48.91	0	82912..83688	-	258	186893424	-	YPTS_0080	-	extracellular solute-binding protein
81	 44.61	0	83806..85233	-	475	186893425	-	YPTS_0081	-	anion transporter
82	 54.06	+1	85299..86012	-	237	186893426	-	YPTS_0082	-	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
83	 51.63	0	86009..86746	-	245	186893427	-	YPTS_0083	-	LmbE family protein
84	 51.65	0	86940..88118	+	392	186893428	-	YPTS_0084	-	LysR family transcriptional regulator
85	 48.83	0	88349..89116	-	255	186893429	-	YPTS_0085	-	triosephosphate isomerase
86	 44.81	0	89245..89880	-	211	186893430	-	YPTS_0086	-	hypothetical protein
87	 52.57	0	90094..90462	+	122	186893431	-	YPTS_0087	-	hypothetical protein
88	 52.07	0	90803..91549	-	248	186893432	-	YPTS_0088	-	oxidoreductase FAD/NAD(P)-binding subunit
89	 52.42	0	91704..92714	-	336	186893433	-	YPTS_0089	-	fructose-1,6-bisphosphatase, class II
90	 51.97	0	92967..94490	-	507	186893434	-	YPTS_0090	-	glycerol kinase
91	 50.88	0	94667..95515	-	282	186893435	-	YPTS_0091	-	MIP family channel protein
92	 42.92	0	96159..96398	+	79	186893436	-	YPTS_0092	-	hypothetical protein
93	 43.83	0	96746..98860	-	704	186893437	-	YPTS_0093	-	ABC transporter related
94	 39.21	-1	98853..100145	-	430	186893438	-	YPTS_0094	-	secretion protein HlyD family protein
95	 45.83	0	100358..100597	+	79	186893439	-	YPTS_0095	-	hypothetical protein
96	 53.16	+1	101227..101811	+	194	186893440	-	YPTS_0096	-	hypothetical protein
97	 47.53	0	101928..102413	-	161	186893441	-	YPTS_0097	-	regulator of ribonuclease activity A
98	 48.91	0	102555..103472	-	305	186893442	-	YPTS_0098	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
99	 49.17	0	103707..105038	-	443	186893443	-	YPTS_0099	-	heat shock protein HslVU, ATPase subunit HslU
100	 48.57	0	105109..105633	-	174	186893444	-	YPTS_0100	-	20S proteasome A and B subunits
47.60	MEAN

5.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.