IslandPath Analysis: Helicobacter acinonychis str. Sheeba



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.39   STD DEV: 3.61
Helicobacter acinonychis str. Sheeba, complete genome - 1..1553927
1612 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.63	0	1..1350	+	449	109946641	dnaA	Hac_0001	-	chromosomal replication initiation protein
2	 36.33	0	1575..3011	+	478	109946642	-	Hac_0002	-	hypothetical protein
3	 37.05	0	3162..3914	+	250	109946643	exoA	Hac_0003	-	exodeoxyribonuclease
4	 39.31	0	3911..4546	-	211	109946644	-	Hac_0004	-	hypothetical protein
5	 35.31	0	4550..4903	-	117	109946645	-	Hac_0005	-	hypothetical protein
6	 36.17	0	5021..6886	+	621	109946646	recG	Hac_0006	-	ATP-dependent DNA helicase
7	 32.18	-1	6937..8328	+	463	109946647	mod fragment 1	-	COG2189L	type III restriction-modification system methylation subunit fragment 1
8	 33.84	-1	8325..8915	+	196	109946648	mod fragment 2	-	COG2189L	type III restriction-modification system methylation subunit fragment 2
9	 33.95	-1	8916..11840	+	974	109946649	res	Hac_0009	-	type III restriction enzyme
10	 31.60	-1	12025..13122	+	365	109946650	ECO57IR fragment 1	-	COG1002V	putative type II DNA modification enzyme (methyltransferase) fragment 1
11	 39.19	0	13240..15798	+	852	109946651	ECO57IR fragment 2	-	COG1002V	putative type II DNA modification enzyme (methyltransferase) fragment 2
12	 37.21	0	16548..17321	-	257	109946652	trpA	Hac_0013	-	tryptophan synthase subunit alpha
13	 43.06	+1	17333..18514	-	393	109946653	trpB	Hac_0014	-	tryptophan synthase subunit beta
14	 36.94	0	18516..19874	-	452	162139481	trpC	Hac_0015	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
15	 40.08	0	19867..20874	-	335	109946655	trpD	Hac_0016	-	anthranilate phosphoribosyltransferase
16	 39.80	0	20871..21458	-	195	109946656	trpG	Hac_0017	-	anthranilate synthase component II
17	 38.86	0	21455..22957	-	500	109946657	trpE	Hac_0018	-	anthranilate synthase component I
18	 36.70	0	23101..23901	-	266	109946658	fragment 2	Hac_0019	COG2194R	hypothetical protein
19	 37.78	0	23963..24772	-	269	109946659	fragment 1	Hac_0020	COG2194R	hypothetical protein
20	 35.33	0	24784..25887	-	367	109946660	rfaJ	Hac_0021	-	lipopolysaccharide biosynthesis protein
21	 37.20	0	25891..26691	-	266	109946661	miaA	Hac_0022	-	tRNA delta(2)-isopentenylpyrophosphate transferase
22	 34.80	0	26792..27133	-	113	109946662	-	Hac_0023	-	hypothetical protein
23	 35.79	0	27193..27639	+	148	109946663	-	Hac_0024	-	7-cyano-7-deazaguanine reductase
24	 34.25	-1	32725..33159	-	144	109946664	-	Hac_0029	-	hypothetical protein
25	 39.29	0	33765..34772	-	335	109946665	llm	Hac_0030	-	methicillin resistance protein
26	 37.01	0	34902..35690	+	262	109946666	pdxJ	Hac_0031	-	pyridoxal phosphate biosynthetic protein PdxJ
27	 40.94	0	35692..36624	+	310	109946667	pdxA	Hac_0032	-	4-hydroxythreonine-4-phosphate dehydrogenase
28	 36.18	0	36694..37080	+	128	109946668	fragment 1	Hac_0033	COG1106R	hypothetical protein
29	 36.23	0	37047..37391	+	114	109946669	fragment 2	Hac_0034	-	hypothetical protein
30	 39.72	0	37610..37750	-	46	109946670	omp1 fragment 4	-	-	outer membrane protein 1 fragment 4
31	 42.89	+1	37807..38277	-	156	109946671	omp1 fragment 3	-	-	outer membrane protein 1 fragment 3
32	 45.24	+1	38337..38546	-	69	109946672	omp1 fragment 2	-	-	outer membrane proteine 1 fragment 2
33	 43.01	+1	38662..39033	-	123	109946673	omp1 fragment 1	-	COG0840NT	outer membrane protein 1 fragment 1
34	 42.54	+1	39328..40608	-	426	109946674	gltA	Hac_0040	-	type II citrate synthase
35	 42.02	+1	40811..42088	+	425	109946675	icdA	Hac_0041	-	isocitrate dehydrogenase
36	 40.66	0	42133..42651	+	172	109946676	-	Hac_0042	-	hypothetical protein
37	 35.92	0	42628..43284	-	218	109946677	bioD	Hac_0043	-	hypothetical protein
38	 35.51	0	43392..43805	+	137	109946678	-	Hac_0044	-	hypothetical protein
39	 40.58	0	43807..44082	+	91	109946679	-	Hac_0045	-	hypothetical protein
40	 39.59	0	44082..46301	+	739	109946680	clpA	Hac_0046	-	ATP-dependent Clp protease, ATP-binding subunit ClpA
41	 39.82	0	46303..46641	+	112	109946681	panD	Hac_0047	-	aspartate alpha-decarboxylase
42	 36.73	0	46652..46945	+	97	109946682	-	Hac_0048	-	hypothetical protein
43	 37.45	0	46945..47940	+	331	109946683	-	Hac_0049	-	hypothetical protein
44	 37.56	0	47948..49012	+	354	109946684	-	Hac_0050	-	hypothetical protein
45	 39.52	0	49172..49915	+	247	109946685	comB1	Hac_0052	-	ComB1 protein
46	 33.54	-1	49915..50865	+	316	109946686	comB2	Hac_0053	-	ComB2 protein
47	 40.19	0	50858..51994	+	378	109946687	comB3	Hac_0054	-	ComB3 protein
48	 38.52	0	52044..53471	+	475	109946688	algA	Hac_0055	-	mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase
49	 40.23	0	53481..54626	+	381	109946689	gmd	Hac_0056	-	hypothetical protein
50	 39.55	0	54619..55551	+	310	109946690	wbcJ	Hac_0057	-	GDP-fucose synthetase, putative
51	 39.25	0	56017..56844	-	275	109946691	tyrA	Hac_0058	-	prephenate dehydrogenase
52	 40.10	0	56846..59341	-	831	109946692	lon	Hac_0059	-	ATP-dependent protease La
53	 37.16	0	59382..60035	-	217	109946693	comL	Hac_0060	-	competence lipoprotein
54	 37.18	0	60252..60641	+	129	109946694	-	Hac_0061	-	flagellar assembly protein FliW
55	 41.93	0	60812..61288	+	158	109946695	fabZ	Hac_0062	-	(3R)-hydroxymyristoyl-ACP dehydratase
56	 40.84	0	61291..62103	+	270	109946696	lpxA	Hac_0063	-	UDP-N-acetylglucosamine acyltransferase
57	 40.20	0	62105..63415	+	436	109946697	clpX	Hac_0064	-	ATP-dependent protease ATP-binding subunit
58	 44.54	+1	63468..64511	+	347	109946698	mreB	Hac_0065	-	rod shape-determining protein MreB
59	 36.68	0	64516..65262	+	248	109946699	mreC	Hac_0066	-	rod shape-determining protein
60	 33.52	-1	65307..66404	+	365	109946700	fragment 1	Hac_0067	COG2194R	putative metal-dependent hydrolase fragment 1
61	 33.33	-1	66385..66969	+	194	109946701	fragment 2	Hac_0068	COG2194R	putative metal-dependent hydrolase fragment 2
62	 37.79	0	67196..68383	-	395	109946702	nusA	Hac_0069	-	transcription elongation factor NusA
63	 35.54	0	68449..69627	-	392	109946703	selA	Hac_0070	-	selenocysteine synthase
64	 43.83	+1	69844..72435	-	863	109946704	frpB	Hac_0072	-	iron-regulated outer membrane protein
65	 37.61	0	72588..72914	-	108	109946705	-	Hac_0073	-	hypothetical protein
66	 34.75	-1	72898..73251	-	117	109946706	folB	Hac_0074	-	hypothetical protein
67	 39.52	0	73248..73910	-	220	109946707	-	Hac_0075	-	putative glycerol-3-phosphate acyltransferase PlsY
68	 39.10	0	74014..75384	+	456	109946708	-	Hac_0076	-	ferredoxin-like protein
69	 39.67	0	75393..76592	-	399	109946709	lys1	Hac_0077	-	hypothetical protein
70	 42.05	+1	76679..77905	+	408	109946710	gltS	Hac_0078	-	sodium/glutamate symport carrier protein
71	 38.36	0	77902..78936	+	344	109946711	ribD	Hac_0079	-	diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
72	 35.98	0	78918..79634	+	238	109946712	-	Hac_0080	-	hypothetical protein
73	 38.16	0	79645..81984	+	779	109946713	copA	Hac_0081	-	cation transporter E1-E2 family ATPase
74	 40.24	0	82141..83139	-	332	109946714	hypE	Hac_0082	-	hydrogenase expression/formation protein
75	 38.48	0	83142..85394	-	750	109946715	hypF	Hac_0083	-	transcriptional regulatory protein HypF
76	 36.66	0	85391..86383	-	330	109946716	-	Hac_0084	-	hypothetical protein
77	 39.35	0	86453..86668	-	71	109946717	dpnA fragment 3	-	COG0863L	adenine specific DNA methyltransferase fragment 3
78	 38.89	0	86708..86815	-	35	109946718	dpnA fragment 2	-	-	adenine specific DNA methyltransferase fragment 2
79	 35.29	0	86988..87089	-	33	109946719	dpnA fragment 1	-	-	adenine specific DNA methyltransferase fragment 1
80	 38.69	0	87152..87319	-	55	109946720	DDEM fragment 4	-	COG0270L	cytosine specific DNA methyltransferase fragment 4
81	 38.49	0	87354..87605	-	83	109946721	DDEM fragment 3	-	COG0270L	cytosine specific DNA methyltransferase fragment 3
82	 34.97	0	87595..87900	-	101	109946722	DDEM fragment 2	-	COG0270L	cytosine specific DNA methyltransferase fragment 2
83	 37.40	0	87983..88228	-	81	109946723	DDEM fragment 1	-	COG0270L	cytosine specific DNA methyltransferase fragment 1
84	 42.57	+1	88497..89654	+	385	109946724	-	Hac_0095	-	outer membrane protein 2
85	 33.06	-1	89973..91412	-	479	109946725	-	Hac_0096	-	hypothetical protein
86	 38.16	0	91509..92543	-	344	109946726	-	Hac_0097	-	hypothetical protein
87	 37.84	0	92599..93375	-	258	109946727	-	Hac_0098	-	hypothetical protein
88	 37.70	0	93524..94072	+	182	109946728	-	Hac_0099	-	hypothetical protein
89	 34.97	0	94509..94691	+	60	109946729	-	Hac_0101	-	hypothetical protein
90	 38.21	0	94952..95731	-	259	109946730	murB	Hac_0104	-	UDP-N-acetylenolpyruvoylglucosamine reductase
91	 36.70	0	95735..96001	-	88	109946731	fliQ	Hac_0105	-	flagellar biosynthesis protein FliQ
92	 43.68	+1	96012..97316	-	434	109946732	fliI	Hac_0106	-	flagellum-specific ATP synthase
93	 40.00	0	97317..98231	-	304	109946733	virB11	Hac_0107	-	virB11 protein
94	 38.83	0	98248..101013	-	921	109946734	ileS	Hac_0108	-	isoleucyl-tRNA synthetase
95	 41.09	0	101041..101298	-	85	109946735	-	Hac_0109	-	hypothetical protein
96	 37.96	0	101400..102026	+	208	109946736	-	Hac_0110	-	hypothetical protein
97	 44.98	+1	102492..102740	-	82	109946737	-	Hac_0111	-	hypothetical protein
98	 36.64	0	102975..103790	+	271	109946738	ksgA	Hac_0113	-	dimethyladenosine transferase
99	 40.45	0	103827..105893	+	688	109946739	-	Hac_0114	-	hypothetical protein
100	 41.52	0	105877..106866	+	329	109946740	-	Hac_0115	-	hypothetical protein
38.39	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.