IslandPath Analysis: Methanococcus maripaludis S2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.73   STD DEV: 3.61
Methanococcus maripaludis S2, complete genome - 1..1661137
1722 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.46	0	10104..10385	+	93	45357564	-	MMP0001	-	hypothetical protein
2	 33.33	0	10416..11480	+	354	45357565	-	MMP0002	-	L-seryl-tRNA selenium transferase
3	 39.01	+1	11517..12608	-	363	45357566	korA	MMP0003	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
4	 34.34	0	12647..13543	-	298	45357567	-	MMP0004	-	hypothetical protein
5	 29.10	-1	13625..15208	-	527	45357568	-	MMP0005	-	hypothetical protein
6	 35.08	0	15336..16421	+	361	45357569	-	MMP0006	-	3-dehydroquinate synthase
7	 38.65	+1	16803..17573	+	256	45357570	-	MMP0007	-	geranylgeranylglyceryl phosphate synthase-like protein
8	 34.47	0	17602..19359	-	585	45357571	DP1	MMP0008	-	DNA polymerase II small subunit
9	 32.62	0	19370..20488	-	372	45357572	-	MMP0009	-	putative DNA primase large subunit
10	 32.86	0	20506..20931	-	141	45357573	-	MMP0010	-	hypothetical protein
11	 32.96	0	20974..22041	-	355	45357574	-	MMP0011	-	DNA-cytosine methyltransferase
12	 28.22	-1	22111..22560	+	149	45357575	-	MMP0012	-	CoA-binding domain protein
13	 35.13	0	22602..24047	+	481	45357576	argH	MMP0013	-	argininosuccinate lyase
14	 28.55	-1	24061..25230	-	389	45357577	truD	MMP0014	-	tRNA pseudouridine synthase D
15	 30.22	0	25243..26046	-	267	45357578	-	MMP0015	-	hypothetical protein
16	 31.91	0	26061..26552	-	163	45357579	-	MMP0016	-	hypothetical protein
17	 32.48	0	26673..27725	-	350	45357580	-	MMP0017	-	hypothetical protein
18	 32.74	0	27798..28640	+	280	45357581	-	MMP0018	-	LysR family transcriptional regulator
19	 32.02	0	28670..28897	-	75	45357582	-	MMP0019	-	hypothetical protein
20	 38.73	+1	28989..29414	-	141	45357583	-	MMP0020	-	nickel responsive regulator
21	 30.94	0	29531..30406	+	291	45357584	-	MMP0021	-	hypothetical protein
22	 25.30	-2	30411..30746	-	111	45357585	-	MMP0022	-	hypothetical protein
23	 35.88	0	30743..31567	-	274	45357586	-	MMP0023	-	hypothetical protein
24	 34.86	0	31747..32862	+	371	45357587	-	MMP0024	-	ATPase
25	 31.50	0	32916..33188	-	90	45357588	-	MMP0025	-	hypothetical protein
26	 36.60	0	33256..36651	-	1131	45357589	DP2	MMP0026	-	DNA polymerase II large subunit
27	 33.83	0	42181..43188	-	335	45357590	-	MMP0027	-	TrkA-N domain protein
28	 27.62	-1	43261..44712	+	483	45357591	-	MMP0028	-	cobyrinic acid a,c-diamide synthase
29	 29.89	-1	44777..45415	-	212	45357592	-	MMP0029	-	hypothetical protein
30	 32.54	0	45639..47657	+	672	45357593	-	MMP0030	-	MCM family DNA replication protein
31	 24.47	-2	47673..48755	+	360	45357594	-	MMP0031	-	hypothetical protein
32	 26.25	-2	49388..49909	-	173	45357595	-	MMP0032	-	transcription regulator ArsR
33	 33.01	0	50520..51746	+	408	45357596	-	MMP0033	-	LysR family protein
34	 34.92	0	51767..52714	+	315	45357597	-	MMP0034	-	GTP cyclohydrolase
35	 30.57	0	52740..53789	+	349	45357598	-	MMP0035	-	hypothetical protein
36	 31.54	0	53793..54350	+	185	45357599	tfe	MMP0036	-	transcription initiation factor E subunit alpha
37	 26.70	-1	54361..54948	+	195	45357600	-	MMP0037	-	metal dependent phosphohydrolase
38	 32.78	0	54975..55871	-	298	45357601	-	MMP0038	-	type II secretion system protein
39	 32.39	0	55876..56934	-	352	45357602	-	MMP0039	-	hypothetical protein
40	 35.39	0	56946..58595	-	549	45357603	-	MMP0040	-	type II secretion system protein E
41	 37.94	+1	58605..59624	-	339	45357604	tfb	MMP0041	-	transcription initiation factor IIB
42	 31.56	0	59643..59924	-	93	45357605	-	MMP0042	-	H/ACA RNA-protein complex component Gar1
43	 36.14	0	60428..61495	+	355	45357606	-	MMP0043	-	isopentenyl pyrophosphate isomerase
44	 37.27	0	61568..62914	+	448	45357607	-	MMP0044	-	beta-lactamase domain protein
45	 33.65	0	62928..63881	+	317	45357608	idsA	MMP0045	-	bifunctional short chain isoprenyl diphosphate synthase
46	 32.23	0	63932..64384	+	150	45357609	-	MMP0046	-	hypothetical protein
47	 32.79	0	64389..65498	-	369	45357610	-	MMP0047	-	radical SAM domain protein
48	 32.60	0	65556..65828	+	90	45357611	-	MMP0048	-	hypothetical protein
49	 35.09	0	65867..66322	+	151	45357612	-	MMP0049	-	carbonic anhydrase
50	 36.71	0	66371..66784	+	137	45357613	ribH	MMP0050	-	riboflavin synthase subunit beta
51	 32.65	0	66822..67112	+	96	45357614	hisE	MMP0051	-	phosphoribosyl-ATP pyrophosphatase
52	 33.44	0	67114..68025	-	303	45357615	-	MMP0052	-	putative signal transduction protein with CBS domains
53	 31.58	0	68156..68896	-	246	45357616	-	MMP0053	-	hypothetical protein
54	 31.36	0	68893..69501	-	202	45357617	-	MMP0054	-	hypothetical protein
55	 35.00	0	69515..69994	-	159	45357618	-	MMP0055	-	hypothetical protein
56	 34.91	0	70102..71181	-	359	45357619	cofH	MMP0056	-	FO synthase subunit 2
57	 34.08	0	71296..72372	-	358	45357620	cofH	MMP0057	-	FO synthase subunit 2
58	 40.29	+1	72602..73564	+	320	45357621	mer	MMP0058	-	methylenetetrahydromethanopterin reductase
59	 28.84	-1	73629..74051	-	140	45357622	-	MMP0059	-	hypothetical protein
60	 29.00	-1	74160..74390	-	76	45357623	-	MMP0060	-	ribosomal LX protein
61	 36.70	0	74409..75092	-	227	45357624	aIF6	MMP0061	-	translation initiation factor IF-6
62	 32.94	0	75129..75380	-	83	45357625	-	MMP0062	-	50S ribosomal protein L31e
63	 38.53	+1	75475..76359	+	294	45357626	argB	MMP0063	-	acetylglutamate kinase
64	 34.81	0	76751..77089	+	112	45357627	glnK1	MMP0064	-	nitrogen regulatory protein P-II
65	 41.56	+2	77116..78342	+	408	45357628	amtB	MMP0065	-	ammonium transporter
66	 33.04	0	78446..78784	+	112	45357629	glnB	MMP0066	-	nitrogen regulatory protein P-II
67	 38.64	+1	78986..79324	+	112	45357630	glnK2	MMP0067	-	nitrogen regulatory protein P-II
68	 40.37	+1	79353..80588	+	411	45357631	amtB	MMP0068	-	ammonium transporter
69	 37.00	0	80649..80948	+	99	45357632	-	MMP0069	-	methylated-DNA--protein-cysteine methyltransferase
70	 31.20	0	81202..82140	+	312	45357633	-	MMP0070	-	tungsten containing formylmethanofruran dehydrogenase subunit C-related protein
71	 32.59	0	82661..83734	-	357	45357634	-	MMP0071	-	DNA primase, small subunit
72	 34.05	0	83849..84829	+	326	45357635	-	MMP0072	-	hypothetical protein
73	 37.02	0	84962..86155	+	397	45357636	argG	MMP0073	-	argininosuccinate synthase
74	 33.89	0	86225..86581	+	118	45357637	-	MMP0074	-	hypothetical protein
75	 29.31	-1	86570..87538	-	322	45357638	-	MMP0075	-	abortive infection protein
76	 38.57	+1	87608..87817	-	69	45357639	-	MMP0076	-	deoxyribonuclease
77	 34.29	0	87961..88689	+	242	45357640	-	MMP0077	-	radical SAM domain protein
78	 32.98	0	88705..89550	-	281	45357641	-	MMP0078	-	hypothetical protein
79	 33.66	0	89745..90362	+	205	45357642	-	MMP0079	-	orotate phosphoribosyltransferase
80	 38.19	+1	90509..91600	+	363	45357643	-	MMP0080	-	glutamate synthase; large subunit; subunit 1
81	 39.92	+1	91628..93160	+	510	45357644	gltB	MMP0081	-	glutamate synthase; large subunit; subunit 2
82	 38.64	+1	93160..93951	+	263	45357645	-	MMP0082	-	glutamate synthase; large subunit; subunit 3
83	 34.72	0	93984..95063	+	359	45357646	-	MMP0083	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
84	 29.83	-1	95381..96094	-	237	45357647	-	MMP0084	-	hypothetical protein
85	 32.76	0	96131..97177	-	348	45357648	-	MMP0085	-	hypothetical protein
86	 35.27	0	97177..97641	-	154	45357649	-	MMP0086	-	putative transcriptional regulator
87	 38.47	+1	97761..98987	-	408	45357650	hmgA	MMP0087	-	hydroxymethylglutaryl-coenzyme A reductase:3-hydroxy-3-methylglutaryl coenzyme A reductase
88	 32.03	0	98977..100125	-	382	45357651	hemA	MMP0088	-	glutamyl-tRNA reductase
89	 26.90	-1	100130..100735	-	201	45357652	-	MMP0089	-	siroheme synthase
90	 28.28	-1	100750..101817	-	355	45357653	-	MMP0090	-	glycosyl transferase
91	 34.70	0	101838..102422	-	194	45357654	-	MMP0091	-	hypothetical protein
92	 30.86	0	102523..102846	-	107	45357655	rpoF	MMP0092	-	DNA-directed RNA polymerase subunit F
93	 37.07	0	102895..103188	-	97	45357656	-	MMP0093	-	50S ribosomal protein L21e
94	 35.31	0	103274..104686	-	470	45357657	-	MMP0094	-	THUMP domain protein
95	 35.78	0	104708..105892	+	394	45357658	-	MMP0095	-	hypothetical protein
96	 34.09	0	105895..107082	-	395	45357659	-	MMP0096	-	putative transcriptional regulator, GntR family
97	 32.24	0	107207..107755	+	182	45357660	-	MMP0097	-	transcriptional regulator
98	 41.92	+2	107786..107983	-	65	45357661	-	MMP0098	-	ferredoxin
99	 34.64	0	108126..109277	+	383	45357662	-	MMP0099	-	major facilitator transporter
100	 36.47	0	109297..110475	-	392	45357663	-	MMP0100	-	Na(+)/H(+) exchanger family protein
33.73	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.