IslandPathversion 1.0

IslandPath Analysis: Actinobacillus pleuropneumoniae serovar 7 str. AP76



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.72 STD DEV: 3.73
Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete genome - 1..2331981
2131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.81	0	2..1486	+	494	190149270	-	APP7_0001	-	chromosomal replication initiator protein
2	 44.02	0	1503..2606	+	367	190149271	-	APP7_0002	-	DNA polymerase III subunit beta
3	 43.86	0	2940..4022	+	360	190149272	-	APP7_0003	-	DNA replication and repair protein RecF
4	 46.60	+1	4078..4650	-	190	190149273	-	APP7_0004	-	superoxide dismutase [Cu-Zn] precursor
5	 43.76	0	4833..5945	+	370	190149274	-	APP7_0005	-	Aspartate-semialdehyde dehydrogenase Asd
6	 43.32	0	6072..7202	-	376	190149275	-	APP7_0006	-	outer membrane protein P2
7	 43.57	0	7347..8528	+	393	190149276	-	APP7_0007	-	Lipid-A-disaccharide synthase
8	 43.18	0	8558..9613	+	351	190149277	-	APP7_0008	-	putative protease SohB
9	 44.44	0	9849..10307	+	152	190149278	-	APP7_0009	-	hypothetical protein
10	 45.12	0	10333..11274	+	313	190149279	-	APP7_0010	-	S-adenosyl-methyltransferase MraW
11	 40.32	0	11287..11601	+	104	190149280	-	APP7_0011	-	cell division protein FtsL
12	 44.74	0	11605..13665	+	686	190149281	-	APP7_0012	-	peptidoglycan synthetase FtsI
13	 45.51	+1	13689..15191	+	500	190149282	-	APP7_0013	-	UDP-N-acetylmuramyl-tripeptide synthetase
14	 44.66	0	15406..16800	+	464	190149283	-	APP7_0014	-	UDP-MurNAc-pentapeptide synthetase
15	 43.31	0	16897..17979	+	360	190149284	-	APP7_0015	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
16	 44.32	0	18063..19373	+	436	190149285	-	APP7_0016	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase
17	 43.94	0	19375..20553	+	392	190149286	-	APP7_0017	-	cell division protein FtsW
18	 48.30	+1	20708..21763	+	351	190149287	-	APP7_0018	-	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase
19	 47.06	+1	21815..23242	+	475	190149288	-	APP7_0019	-	UDP-N-acetylmuramate--L-alanine ligase
20	 44.74	0	23350..24261	+	303	190149289	-	APP7_0020	-	D-alanine--D-alanine ligase
21	 41.26	0	24261..25055	+	264	190149290	-	APP7_0021	-	cell division protein FtsQ
22	 42.59	0	25081..26355	+	424	190149291	-	APP7_0022	-	cell division protein FtsA
23	 46.78	+1	26394..27605	+	403	190149292	-	APP7_0023	-	cell division protein FtsZ
24	 39.41	0	27639..28559	+	306	190149293	-	APP7_0024	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
25	 41.58	0	28721..30394	+	557	190149294	-	APP7_0025	-	DNA repair protein RecN
26	 43.73	0	30536..31939	-	467	190149295	-	APP7_0026	-	ABC transporter ATP-binding protein
27	 42.75	0	31939..32724	-	261	190149296	-	APP7_0027	-	nickel transport system permease protein
28	 45.46	+1	32727..33674	-	315	190149297	-	APP7_0028	-	ABC transporter permease protein
29	 39.94	0	33768..35342	-	524	190149298	-	APP7_0029	-	ABC transporter periplasmic protein
30	 44.40	0	35537..37117	-	526	190149299	-	APP7_0030	-	peptide chain release factor 3
31	 35.47	-1	37300..37767	+	155	190149300	-	APP7_0031	-	integral membrane protein
32	 40.50	0	37814..38329	+	171	190149301	-	APP7_0032	-	hypothetical protein
33	 42.56	0	38456..39040	+	194	190149302	-	APP7_0033	-	peptidyl-tRNA hydrolase
34	 43.86	0	39149..40240	+	363	190149303	-	APP7_0034	-	GTP-dependent nucleic acid-binding protein EngD
35	 39.50	0	40312..40749	+	145	190149304	-	APP7_0035	-	putative protein-S-isoprenylcysteine methyltransferase
36	 37.68	-1	40799..41074	-	91	190149305	-	APP7_0036	-	hypothetical protein
37	 48.39	+1	41105..41569	-	154	190149306	-	APP7_0037	-	outer membrane lipoprotein
38	 37.35	-1	41596..42192	-	198	190149307	-	APP7_0038	-	hypothetical protein
39	 43.17	0	42290..44017	+	575	190149308	-	APP7_0039	-	arginyl-tRNA synthetase
40	 46.43	+1	44161..45336	+	391	190149309	-	APP7_0040	-	hypothetical GTP-binding protein
41	 39.87	0	45411..46022	+	203	190149310	-	APP7_0041	-	hypothetical protein
42	 46.51	+1	46127..46870	-	247	190149311	-	APP7_0042	-	23S rRNA (guanosine-2'-O-)-methyltransferase
43	 39.85	0	46949..48313	-	454	190149312	-	APP7_0043	-	phosphatidylserine synthase
44	 43.27	0	48465..51281	-	938	190149313	-	APP7_0044	-	isoleucyl-tRNA synthetase
45	 42.89	0	51341..52303	-	320	190149314	-	APP7_0045	-	riboflavin biosynthesis protein
46	 40.05	0	52636..53916	+	426	190149315	-	APP7_0046	-	transcriptional regulator NadR
47	 44.21	0	53913..54611	+	232	190149316	-	APP7_0047	-	hypothetical diadenosine tetraphosphatase
48	 41.42	0	54784..55500	+	238	190149317	-	APP7_0048	-	aerobic respiration control protein ArcA
49	 41.43	0	55552..56070	+	172	190149318	-	APP7_0049	-	hypothetical protein
50	 45.62	+1	56153..56689	-	178	190149319	-	APP7_0050	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
51	 42.98	0	56744..57427	+	227	190149320	-	APP7_0051	-	hypothetical protein
52	 32.86	-2	57469..58311	+	280	190149321	-	APP7_0052	-	hypothetical protein
53	 42.25	0	58389..60350	+	653	190149322	-	APP7_0053	-	GTP-binding protein
54	 40.15	0	60509..60772	+	87	190149323	-	APP7_0054	-	glutaredoxin
55	 46.30	+1	60831..61547	-	238	190149324	-	APP7_0055	-	ribonuclease PH
56	 41.44	0	61751..62614	+	287	190149325	-	APP7_0056	-	hypothetical protein
57	 41.67	0	62623..63510	+	295	190149326	-	APP7_0057	-	hypothetical protein
58	 41.38	0	63560..63820	-	86	190149327	-	APP7_0058	-	putative ferredoxin
59	 40.00	0	63967..64596	-	209	190149328	-	APP7_0059	-	nitrate/nitrite response regulator protein
60	 43.01	0	64800..66938	+	712	190149329	-	APP7_0060	-	putative N6-adenine-specific DNA methylase
61	 40.62	0	66996..67475	+	159	190149330	-	APP7_0061	-	putative tRNA/rRNA methyltransferase
62	 40.51	0	67615..68562	-	315	190149331	-	APP7_0062	-	transaldolase
63	 38.90	0	74701..76299	+	532	190149332	-	APP7_0063	-	periplasmic dipeptide transport protein
64	 40.70	0	76464..78065	+	533	190149333	-	APP7_0064	-	periplasmic dipeptide transport protein
65	 41.39	0	78193..79197	+	334	190149334	-	APP7_0065	-	dipeptide transport system permease protein DppB
66	 45.57	+1	79275..80165	+	296	190149335	-	APP7_0066	-	dipeptide transport system permease protein DppC
67	 45.59	+1	80176..81162	+	328	190149336	-	APP7_0067	-	dipeptide transport ATP-binding protein DppD
68	 44.85	0	81175..82164	+	329	190149337	-	APP7_0068	-	dipeptide transport ATP-binding protein DppF
69	 38.44	0	82237..82647	-	136	190149338	-	APP7_0069	-	phosphate-starvation-inducible protein PsiE
70	 39.97	0	82725..83357	-	210	190149339	-	APP7_0070	-	hypothetical protein
71	 43.77	0	83412..83756	-	114	190149340	-	APP7_0071	-	hypothetical protein
72	 46.34	+1	83843..84880	-	345	190149341	-	APP7_0072	-	branched-chain-amino-acid aminotransferase
73	 40.84	0	85022..85354	-	110	190149342	-	APP7_0073	-	monothiol glutaredoxin-like protein
74	 44.44	0	85426..86091	-	221	190149343	-	APP7_0074	-	recombination protein RecR
75	 46.97	+1	86102..86431	-	109	190149344	-	APP7_0075	-	uncharacterized protein YbaB
76	 47.44	+1	86600..87457	-	285	190149345	-	APP7_0076	-	protein TonB2
77	 37.95	-1	87467..87856	-	129	190149346	-	APP7_0077	-	biopolymer transport protein ExbD2
78	 39.29	0	87901..88353	-	150	190149347	-	APP7_0078	-	biopolymer transport protein ExbB2
79	 45.26	0	88541..88867	+	108	190149348	-	APP7_0079	-	thiosulfate sulfurtransferase GlpE
80	 39.60	0	88911..89756	+	281	190149349	-	APP7_0080	-	putative thioredoxin-like protein
81	 48.28	+1	89830..90237	-	135	190149350	-	APP7_0081	-	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM
82	 44.82	0	90246..90872	-	208	190149351	-	APP7_0082	-	PTS-dependent dihydroxyacetone kinase, ADP- binding subunit DhaL
83	 45.10	0	90874..91944	-	356	190149352	-	APP7_0083	-	PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK
84	 44.65	0	92114..93067	+	317	190149353	trxB	APP7_0084	-	hypothetical protein
85	 46.61	+1	93175..93927	+	250	190149354	-	APP7_0085	-	3-deoxy-manno-octulosonate cytidylyltransferase
86	 44.23	0	94552..95322	-	256	190149355	-	APP7_0086	-	NADH pyrophosphatase
87	 40.77	0	95340..96038	-	232	190149356	-	APP7_0087	-	ribosomal large subunit pseudouridine synthase E
88	 42.05	0	96039..96887	-	282	190149357	-	APP7_0088	-	hypothetical protein
89	 38.06	0	96887..97351	-	154	190149358	fxsA	APP7_0089	-	Protein fxsA
90	 41.59	0	97374..98705	-	443	190149359	-	APP7_0090	-	Xaa-Pro dipeptidase
91	 42.92	0	98729..98968	+	79	190149360	-	APP7_0091	-	sulfurtransferase
92	 41.50	0	99018..99458	-	146	190149361	-	APP7_0092	-	hypothetical protein
93	 43.46	0	99460..100002	-	180	190149362	-	APP7_0093	-	putative GTP-binding protein EngB
94	 42.69	0	100361..100777	-	138	190149363	-	APP7_0094	-	hypothetical protein
95	 48.13	+1	100815..101645	-	276	190149364	-	APP7_0095	-	zinc transporter family protein ZIP
96	 46.95	+1	101796..103631	-	611	190149365	-	APP7_0096	-	Dihydroxy-acid dehydratase
97	 41.55	0	103749..103967	-	72	190149366	-	APP7_0097	-	Acetolactate synthase isozyme II small subunit (AHAS-II)
98	 46.22	+1	103985..105637	-	550	190149367	-	APP7_0098	-	Acetolactate synthase isozyme II large subunit (AHAS-II)
99	 42.17	0	106064..107545	+	493	190149368	-	APP7_0099	-	Cytochrome c-552 precursor
100	 44.14	0	107566..108213	+	215	190149369	-	APP7_0100	-	cytochrome c-type protein NrfB precursor
41.72	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.