IslandPath Analysis: Baumannia cicadellinicola str. Hc (Homalodisca coagulata)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.06   STD DEV: 3.47
Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete genome - 1..686194
595 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 31.56	0	197..1720	+	507	94676930	mqo	BCI_0001	-	malate:quinone oxidoreductase
2	 36.08	0	1933..5826	+	1297	94676501	purL	BCI_0002	-	phosphoribosylformylglycinamidine synthase
3	 33.33	0	5880..6356	+	158	94676768	-	BCI_0003	-	cytidine/deoxycytidylate deaminase family protein
4	 35.33	0	6569..7822	+	417	94676948	glyA	BCI_0004	-	serine hydroxymethyltransferase
5	 31.85	0	7855..8661	-	268	94676640	suhB	BCI_0005	-	inositol-1-monophosphatase
6	 35.93	0	8964..10118	+	384	94676971	iscS	BCI_0006	-	cysteine desulfurase
7	 33.56	0	10151..10585	+	144	94676555	ndk	BCI_0007	-	nucleoside-diphosphate kinase
8	 34.67	0	10933..12054	+	373	94676513	ispG	BCI_0008	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
9	 33.33	0	12077..13369	+	430	94676769	hisS	BCI_0009	-	histidyl-tRNA synthetase
10	 30.95	0	13440..14615	+	391	162139366	-	BCI_0010	-	outer membrane protein assembly complex subunit YfgL
11	 31.50	0	14634..16052	+	472	94676730	engA	BCI_0011	-	GTP-binding protein EngA
12	 31.65	0	16150..17811	+	553	94676673	pgi	BCI_0012	-	glucose-6-phosphate isomerase
13	 33.89	0	18124..19740	-	538	94676690	pckA	BCI_0013	-	phosphoenolpyruvate carboxykinase
14	 33.70	0	20049..20594	+	181	94677044	nudE	BCI_0014	-	ADP-ribose diphosphatase NudE
15	 38.43	+1	20778..21935	+	385	94676924	metK	BCI_0015	-	S-adenosylmethionine synthetase
16	 37.73	+1	21979..22887	-	302	94676832	metR	BCI_0016	-	transcriptional regulator, MetR
17	 36.78	0	22990..25284	+	764	94676804	metE	BCI_0017	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
18	 33.33	0	25559..27043	+	494	94676719	-	BCI_0018	-	RmuC domain-containing protein
19	 30.94	0	27142..28062	-	306	94676623	metA	BCI_0019	-	homoserine O-succinyltransferase
20	 32.64	0	28316..30781	-	821	94676525	plsB	BCI_0020	-	glycerol-3-phosphate acyltransferase
21	 33.53	0	30959..31975	-	338	94677001	trpS	BCI_0021	-	tryptophanyl-tRNA synthetase
22	 36.06	0	32055..32750	-	231	94676944	rpe	BCI_0022	-	ribulose-phosphate 3-epimerase
23	 34.44	0	32844..33923	-	359	94676775	aroB	BCI_0023	-	3-dehydroquinate synthase
24	 38.51	+1	33928..34449	-	173	94676739	aroK	BCI_0024	-	shikimate kinase I
25	 31.06	0	34736..36097	-	453	94676563	pssA	BCI_0025	-	phosphatidylserine synthase
26	 31.64	0	36278..36928	-	216	94676573	-	BCI_0026	-	DedA family protein
27	 29.46	-1	38198..38455	+	85	94676699	-	BCI_0027	-	BolA/YrbA family protein
28	 37.71	+1	38523..39779	+	418	94676607	murA	BCI_0028	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
29	 35.72	0	39828..41210	-	460	94676856	degQ	BCI_0029	-	serine protease
30	 32.11	0	41305..41712	-	135	94676761	-	BCI_0030	-	hypothetical protein
31	 33.33	0	41948..42376	+	142	94676989	rplM	BCI_0031	-	50S ribosomal protein L13
32	 40.10	+1	42396..42794	+	132	94676964	rpsI	BCI_0032	-	ribosomal protein S9
33	 25.86	-2	43254..43748	+	164	94676546	-	BCI_0033	-	hypothetical protein
34	 34.91	0	45160..46740	+	526	94676505	purH	BCI_0035	-	bifunctional purine biosynthesis protein PurH
35	 36.16	0	46761..48035	+	424	94676764	purD	BCI_0036	-	phosphoribosylamine--glycine ligase
36	 32.71	0	48145..48624	-	159	94676705	-	BCI_0037	-	heat shock protein
37	 34.00	0	48741..49643	-	300	94676588	-	BCI_0038	-	hypothetical protein
38	 26.03	-2	49666..50199	-	177	94676580	nuc	BCI_0039	-	endonuclease
39	 35.09	0	50301..50585	-	94	94676703	hup	BCI_0040	-	DNA-binding protein HU-alpha
40	 37.99	+1	51358..53226	+	622	94676627	thiC	BCI_0041	-	thiamine biosynthesis protein ThiC
41	 35.97	0	53213..53857	+	214	94676830	thiE	BCI_0042	-	thiamine-phosphate pyrophosphorylase
42	 37.47	0	53850..54623	+	257	94676797	thiF	BCI_0043	-	4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate synthesis protein
43	 34.33	0	54623..54823	+	66	94677055	thiS	BCI_0044	-	thiamine biosynthesis protein ThiS
44	 40.13	+1	54827..55606	+	259	94676898	thiG	BCI_0045	-	thiazole synthase
45	 36.21	0	55603..56751	+	382	94676692	thiH	BCI_0046	-	thiH protein
46	 24.74	-2	56812..57288	-	158	94676500	mreD	BCI_0047	-	rod shape-determining protein MreD
47	 31.14	0	57447..58313	-	288	94676771	mreC	BCI_0048	-	rod shape-determining protein MreC
48	 42.05	+2	58348..59391	-	347	94676660	mreB	BCI_0049	-	rod shape-determining protein mreB
49	 34.92	0	59747..60250	+	167	94676949	aroQ	BCI_0050	-	3-dehydroquinate dehydratase
50	 35.98	0	60272..60724	+	150	94677038	accB	BCI_0051	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
51	 36.15	0	60733..62082	+	449	94676519	accC	BCI_0052	-	acetyl-CoA carboxylase biotin carboxylase subunit
52	 34.12	0	62339..62974	-	211	94676653	-	BCI_0053	-	multiple drug resistance protein MarC
53	 34.29	0	63371..65458	+	695	94676873	prlC	BCI_0054	-	oligopeptidase A
54	 36.32	0	65455..67029	-	524	94676796	pitA	BCI_0055	-	low-affinity inorganic phosphate transporter
55	 32.21	0	67592..68656	+	354	94676923	ftsY	BCI_0056	-	signal recognition particle-docking protein FtsY
56	 31.46	0	68669..69310	+	213	94676907	ftsE	BCI_0057	-	cell division ATP-binding protein FtsE
57	 30.70	0	69330..70280	+	316	94676537	ftsX	BCI_0058	-	cell division protein FtsX
58	 35.42	0	70343..71203	+	286	94676476	rpoH	BCI_0059	-	alternative sigma factor RpoH
59	 33.19	0	71376..72095	+	239	94676701	fre	BCI_0060	-	FMN reductase
60	 40.17	+1	72230..73165	+	311	94676875	hemC	BCI_0061	-	porphobilinogen deaminase
61	 38.06	+1	73173..73913	+	246	94676811	hemD	BCI_0062	-	uroporphyrinogen-III synthase
62	 34.25	0	73928..75448	-	506	94676567	lnt	BCI_0063	-	apolipoprotein N-acyltransferase
63	 31.62	0	75494..75961	-	155	94676735	-	BCI_0064	-	hypothetical protein
64	 35.47	0	76001..77356	-	451	94676510	miaB	BCI_0065	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
65	 33.73	0	77544..79559	-	671	94676849	ligA	BCI_0066	-	DNA ligase, NAD-dependent
66	 32.72	0	79623..80432	-	269	94676814	zipA	BCI_0067	-	cell division protein ZipA
67	 38.72	+1	80668..81633	+	321	94676983	cysK	BCI_0068	-	cysteine synthase A
68	 37.98	+1	81807..82064	+	85	94676904	ptsH	BCI_0069	-	phosphocarrier protein HPr
69	 33.80	0	82117..83832	+	571	94676540	ptsI	BCI_0070	-	phosphoenolpyruvate-protein phosphotransferase
70	 30.67	0	84144..84857	-	237	94676464	purC	BCI_0071	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
71	 33.98	0	85387..86463	+	358	94676544	purM	BCI_0072	-	phosphoribosylformylglycinamidine cyclo-ligase
72	 35.45	0	86454..87113	+	219	94676684	purN	BCI_0073	-	phosphoribosylglycinamide formyltransferase
73	 30.99	0	87324..89411	+	695	94676624	ppk	BCI_0074	-	polyphosphate kinase
74	 37.24	0	89439..91436	-	665	94676587	tktA	BCI_0075	-	transketolase
75	 33.02	0	91457..92410	-	317	94676584	talB	BCI_0076	-	transaldolase A
76	 35.74	0	92901..93731	+	276	94676654	cysT	BCI_0077	-	sulfate/thiosulfate transporter subunit
77	 34.64	0	93740..94582	+	280	94676788	cysW	BCI_0078	-	sulfate/thiosulfate transporter permease subunit
78	 35.36	0	94585..95718	+	377	94676763	cysA	BCI_0079	-	sulfate/thiosulfate transporter subunit
79	 35.45	0	95991..96179	+	62	94676892	rnfB	BCI_0080	-	ferredoxin II, 4Fe-4S type
80	 32.00	0	96281..97555	-	424	94676968	tyrS	BCI_0081	-	tyrosyl-tRNA synthetase
81	 38.71	+1	97591..98241	-	216	94677029	pdxH	BCI_0082	-	pyridoxamine 5'-phosphate oxidase
82	 37.93	+1	98475..98909	-	144	94676462	slyA	BCI_0083	-	transcriptional regulator SlyA
83	 23.23	-2	99001..99099	-	32	94677046	-	BCI_0084	-	hypothetical protein
84	 37.14	0	99313..99969	+	218	94676709	rnt	BCI_0085	-	ribonuclease T
85	 31.39	0	100009..100368	-	119	94676549	-	BCI_0086	-	glutaredoxin-related protein
86	 29.01	-1	100574..101197	-	207	94676713	ribE	BCI_0087	-	riboflavin synthase subunit alpha
87	 32.75	0	101593..101937	+	114	94676618	-	BCI_0089	-	major outer membrane lipoprotein
88	 32.62	0	102617..104287	+	556	94676871	glnS	BCI_0094	-	glutaminyl-tRNA synthetase
89	 32.96	0	104379..104909	-	176	94676824	fldA	BCI_0095	-	flavodoxin
90	 35.34	0	105072..105818	+	248	94677048	-	BCI_0096	-	hypothetical protein
91	 32.74	0	106173..107354	+	393	94676823	sucC	BCI_0097	-	succinyl-CoA synthetase, beta subunit
92	 35.82	0	107342..108226	+	294	94677017	sucD	BCI_0098	-	succinyl-CoA synthetase, alpha subunit
93	 31.76	0	110638..111273	+	211	94676590	pal	BCI_0100	-	peptidoglycan-associated lipoprotein precursor
94	 31.94	0	111288..111935	+	215	94676677	-	BCI_0101	-	hypothetical protein
95	 39.16	+1	111993..113039	+	348	94676697	nadA	BCI_0102	-	quinolinate synthetase
96	 34.22	0	112996..114456	-	486	94676863	tilS	BCI_0103	-	tRNA(Ile)-lysidine synthetase
97	 35.20	0	114465..116123	-	552	94676630	-	BCI_0104	-	Na+/H+ antiporter
98	 33.33	0	116503..117357	-	284	94677010	-	BCI_0105	-	cation ABC transporter, permease protein
99	 33.69	0	117359..118201	-	280	94676474	troB	BCI_0106	-	cation ABC transporter, ATP-binding protein
100	 38.15	+1	118286..118783	-	165	94676852	ssb	BCI_0107	-	single-strand binding protein
34.06	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.