IslandPath Analysis: Legionella pneumophila subsp. pneumophila str. Philadelphia 1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.69   STD DEV: 3.32
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome - 1..3397754
2942 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.67	0	654..2012	+	452	52840257	dnaA	lpg0001	-	chromosomal replication initiator protein DnaA
2	 35.05	-1	2026..3129	+	367	52840258	-	lpg0002	-	DNA polymerase III beta chain
3	 35.78	0	3126..4187	+	353	52840259	-	lpg0003	-	DNA recombination and repair protein ATPase RecF
4	 39.74	0	4482..6902	+	806	52840260	gyrB	lpg0004	-	DNA gyrase subunit B
5	 39.35	0	7271..8317	-	348	52840261	-	lpg0005	-	peptidylarginine deiminase
6	 39.04	0	8314..10206	-	630	52840262	speA	lpg0006	-	arginine decarboxylase
7	 42.66	+1	10226..11083	-	285	52840263	-	lpg0007	-	hydrolase
8	 39.29	0	11612..12871	-	419	52840264	-	lpg0008	-	hypothetical protein
9	 38.37	0	13059..13316	+	85	52840265	hfq	lpg0009	-	host factor-I protein for bacteriophage Q beta replication
10	 43.10	+1	13329..14588	+	419	52840266	-	lpg0010	-	GTP binding protein HflX
11	 36.31	0	14693..15163	-	156	52840267	resA	lpg0011	-	thiol-disulfide oxidoreductase ResA
12	 41.19	0	15332..16909	-	525	52840268	-	lpg0012	-	hypothetical protein
13	 40.73	0	17043..17894	+	283	52840269	-	lpg0013	-	pirin-like protein
14	 40.92	0	18331..19542	+	403	52840270	-	lpg0014	-	transmembrane protein
15	 35.94	0	19643..20716	+	357	52840271	-	lpg0015	-	multidrug resistance protein
16	 35.65	0	20676..21623	+	315	52840272	-	lpg0016	-	hypothetical protein
17	 38.89	0	21596..22513	+	305	52840273	-	lpg0017	-	hypothetical protein
18	 36.36	0	22497..23882	+	461	52840274	-	lpg0018	-	outer membrane efflux protein
19	 37.55	0	24111..25793	+	560	52840275	-	lpg0019	-	hemagglutinin/protease, zinc metalloprotease
20	 37.72	0	26016..26927	+	303	52840276	-	lpg0020	-	integral membrane protein
21	 39.17	0	27119..27598	+	159	52840277	-	lpg0021	-	hypothetical protein
22	 38.98	0	27595..29718	+	707	52840278	-	lpg0022	-	23S rRNA m(2)G2445 methyltransferase
23	 37.02	0	29788..30330	-	180	52840279	-	lpg0023	-	hypothetical protein
24	 40.61	0	30477..30902	-	141	52840280	-	lpg0024	-	hemin binding protein Hbp
25	 43.11	+1	31042..31614	-	190	52840281	-	lpg0025	-	palmitoyl transferase for Lipid A
26	 40.23	0	31774..33165	+	463	52840282	-	lpg0026	-	amino acid permease
27	 42.77	+1	33175..34170	-	331	52840283	pit	lpg0027	-	low affinity inorganic phosphate transporter
28	 41.04	0	34187..34900	-	237	52840284	-	lpg0028	-	ubiquinone biosynthesis protein COQ7
29	 36.38	0	35024..37981	+	985	52840285	rre41	lpg0029	-	sensory box protein
30	 38.03	0	38093..39007	-	304	52840286	-	lpg0030	-	hypothetical protein
31	 45.00	+1	38113..38232	+	39	52840287	-	lpg0031	-	hypothetical protein
32	 38.61	0	39042..40235	-	397	52840288	-	lpg0032	-	leucine aminopeptidase
33	 40.74	0	40298..41323	-	341	52840289	-	lpg0033	-	hypothetical protein
34	 36.88	0	41587..42348	+	253	52840290	-	lpg0034	-	hypothetical protein
35	 34.17	-1	42476..42832	+	118	52840291	-	lpg0035	-	hypothetical protein
36	 36.93	0	42891..43613	-	240	52840292	-	lpg0036	-	hypothetical protein
37	 35.48	0	43827..44570	-	247	52840293	artJ	lpg0037	-	arginine 3rd transport system periplasmic binding protein
38	 38.39	0	44731..46254	-	507	52840294	legA10	lpg0038	-	ankyrin repeat-containing protein
39	 30.53	-2	46638..46994	+	118	52840295	-	lpg0039	-	hypothetical protein
40	 40.06	0	47016..48011	-	331	52840296	-	lpg0040	-	integral membrane protein
41	 40.01	0	48185..50431	+	748	52840297	-	lpg0041	-	hypothetical protein
42	 35.61	0	50444..51145	+	233	52840298	-	lpg0042	-	hypothetical protein
43	 36.24	0	51460..52320	-	286	52840299	-	lpg0043	-	hypothetical protein
44	 32.99	-1	53049..53924	+	291	52840300	-	lpg0044	-	hypothetical protein
45	 34.27	-1	54060..54272	-	70	52840301	-	lpg0045	-	hypothetical protein
46	 36.09	0	54482..54880	+	132	52840302	-	lpg0046	-	hypothetical protein
47	 38.65	0	55046..55741	+	231	52840303	-	lpg0047	-	chloramphenicol acetyltransferase
48	 40.96	0	55738..56616	+	292	52840304	-	lpg0048	-	acetyltransferase
49	 42.77	+1	56651..57964	+	437	52840305	-	lpg0049	-	amino acid transporter, permease
50	 37.49	0	58028..58894	+	288	52840306	-	lpg0050	-	integral membrane protein
51	 35.61	0	59382..59864	-	160	52840307	-	lpg0051	-	hypothetical protein
52	 42.39	+1	60077..60970	-	297	52840308	prpB	lpg0052	-	2-methylisocitrate lyase
53	 38.50	0	61096..61830	-	244	52840309	-	lpg0053	-	transferase enzyme
54	 37.41	0	61823..62557	-	244	52840310	-	lpg0054	-	hypothetical protein
55	 38.72	0	62628..63536	+	302	52840311	-	lpg0055	-	LysR family transcriptional regulator
56	 39.89	0	63669..64400	+	243	52840312	-	lpg0056	-	hypothetical protein
57	 34.57	-1	64673..65077	-	134	52840313	-	lpg0057	-	MerR family transcriptional regulator
58	 38.98	0	65147..65890	+	247	52840314	-	lpg0058	-	hypothetical protein
59	 43.99	+1	66075..67181	+	368	52840315	-	lpg0059	-	hypothetical protein
60	 33.48	-1	68096..68767	+	223	52840316	-	lpg0060	-	methylase
61	 32.40	-1	68797..69975	+	392	52840317	-	lpg0061	-	multidrug resistance protein
62	 32.67	-1	69976..71334	-	452	52840318	-	lpg0062	-	hypothetical protein
63	 35.86	0	71489..72676	+	395	52840319	aroH	lpg0063	-	phospho-2-dehydro-3-deoxyheptonate aldolase
64	 33.01	-1	72782..73708	+	308	52840320	-	lpg0064	-	hypothetical protein
65	 35.77	0	73714..74535	+	273	52840321	-	lpg0065	-	hypothetical protein
66	 35.43	0	74426..75856	+	476	52840322	-	lpg0066	-	phosphoribosylglycinamide synthetase ATP-grasp domain-containing protein
67	 34.63	-1	75853..76467	+	204	52840323	-	lpg0067	-	YdeN-like
68	 34.60	-1	76451..77398	+	315	52840324	-	lpg0068	-	transmembrane protein
69	 46.40	+2	77642..78820	-	392	52840325	aatA	lpg0070	-	aspartate aminotransferase A
70	 48.44	+2	77828..78052	+	74	52840326	-	lpg0071	-	hypothetical protein
71	 42.82	+1	78867..80858	+	663	52840327	uvrB	lpg0072	-	excinuclease ABC subunit B
72	 36.33	0	81213..82814	+	533	52840328	-	lpg0073	-	diguanylate cyclase/phosphodiesterase
73	 40.97	0	82906..84477	-	523	52840329	-	lpg0074	-	glutamate synthase
74	 31.11	-2	84555..84869	-	104	52840330	-	lpg0075	-	hypothetical protein
75	 41.58	0	85025..85606	+	193	52840331	-	lpg0076	-	hypothetical protein
76	 42.66	+1	85693..87021	+	442	52840332	pepP	lpg0077	-	hypothetical protein
77	 42.64	+1	87011..88213	+	400	52840333	ubiH	lpg0078	-	2-octaprenyl-6-methoxyphenol hydroxylase
78	 42.10	+1	88210..89373	+	387	52840334	-	lpg0079	-	2-polyprenyl-6-methoxyphenol hydroxylase
79	 38.28	0	89551..90318	+	255	52840335	-	lpg0080	-	hypothetical protein
80	 37.71	0	90308..91633	-	441	52840336	-	lpg0081	-	hypothetical protein
81	 39.01	0	91808..92371	+	187	52840337	-	lpg0082	-	hypothetical protein
82	 41.35	0	92368..93315	-	315	52840338	-	lpg0083	-	glutathione synthase/ribosomal protein S6 modification enzyme
83	 39.17	0	93312..94835	-	507	52840339	-	lpg0084	-	hypothetical protein
84	 37.69	0	94825..95352	-	175	52840340	-	lpg0085	-	hypothetical protein
85	 39.39	0	95581..97527	+	648	52840341	-	lpg0086	-	hypothetical protein
86	 38.07	0	97493..98083	-	196	52840342	-	lpg0087	-	hypothetical protein
87	 36.55	0	98310..99086	-	258	52840343	-	lpg0088	-	glutamine ABC transporter
88	 41.16	0	99132..99578	-	148	52840344	-	lpg0089	-	hypothetical protein
89	 37.03	0	99689..103663	+	1324	52840345	-	lpg0090	-	hypothetical protein
90	 42.80	+1	103878..104342	+	154	52840346	-	lpg0091	-	hypothetical protein
91	 43.01	+1	104748..106928	+	726	52840347	vacB	lpg0092	-	(exo)ribonuclease R
92	 42.21	+1	106894..107670	+	258	52840348	-	lpg0093	-	tRNA/rRNA methyltransferase
93	 39.94	0	107663..108313	+	216	52840349	rpiA	lpg0094	-	ribose-5-phosphate isomerase A
94	 36.38	0	108377..109756	+	459	52840350	-	lpg0095	-	cytosolic IMP-GMP specific 5'-nucleotidase
95	 40.95	0	109946..111139	+	397	52840351	-	lpg0096	-	hypothetical protein
96	 37.72	0	111300..111641	+	113	52840352	-	lpg0097	-	alkylphosphonate uptake protein PhnA
97	 38.85	0	111756..112208	+	150	52840353	-	lpg0098	-	two component sensor and regulator, histidine kinase response regulator
98	 41.43	0	112238..114928	-	896	52840354	polI	lpg0099	-	DNA polymerase I
99	 40.34	0	114931..116001	-	356	52840355	-	lpg0100	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
100	 39.85	0	116250..117032	+	260	52840356	-	lpg0101	-	hypothetical protein
38.69	MEAN

3.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.